EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018727 (Gene tree)
Gene ID: 52670
Gene Symbol: Cpsf4l
Alias: 0610010C04Rik|1500000C01Rik|D11Ertd636e
Full Name: cleavage and polyadenylation specific factor 4-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 11846 bases
Position: chr11:113698172-113710017
Accession: 1277182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000102228	zf-CCCH	PF00642.24	2.1e-08	1	1
ENSMUSP00000133451	zf-CCCH	PF00642.24	1.4e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000106617	-	1123	XM_006533711	ENSMUSP00000102228	153 (aa)	XP_006533774	A2A6P9
ENSMUST00000173655	-	1213	XM_006533704	ENSMUSP00000133451	228 (aa)	XP_006533767	G3UWW6
ENSMUST00000151396	-	997	-	-	- (aa)	-	-
ENSMUST00000100248	-	1375	XM_006533701	ENSMUSP00000097819	280 (aa)	XP_006533764	E9Q2N0
ENSMUST00000018871	-	1235	XM_006533709	ENSMUSP00000018871	190 (aa)	XP_006533772	Q9DBA5

Gene Model

Click here to download ENSMUSG00000018727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000018727	Cpsf4l	82	62.400	ENSMUSG00000029625	Cpsf4	86	52.358

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018727	Cpsf4l	73	75.449	ENSG00000187959	CPSF4L	93	75.449	Homo_sapiens
ENSMUSG00000018727	Cpsf4l	85	67.010	ENSAMEG00000002707	CPSF4L	71	67.010	Ailuropoda_melanoleuca
ENSMUSG00000018727	Cpsf4l	74	46.903	ENSANAG00000026558	-	85	43.750	Aotus_nancymaae
ENSMUSG00000018727	Cpsf4l	73	58.929	ENSCJAG00000019911	CPSF4L	87	59.732	Callithrix_jacchus
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSCATG00000044555	CPSF4L	92	75.758	Cercocebus_atys
ENSMUSG00000018727	Cpsf4l	73	74.850	ENSCSAG00000004429	CPSF4L	93	74.850	Chlorocebus_sabaeus
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSCANG00000035042	CPSF4L	92	75.758	Colobus_angolensis_palliatus
ENSMUSG00000018727	Cpsf4l	84	79.688	ENSCGRG00001020079	Cpsf4l	100	81.667	Cricetulus_griseus_chok1gshd
ENSMUSG00000018727	Cpsf4l	84	79.688	ENSCGRG00000010419	Cpsf4l	100	81.667	Cricetulus_griseus_crigri
ENSMUSG00000018727	Cpsf4l	74	75.000	ENSDNOG00000014458	CPSF4L	88	75.000	Dasypus_novemcinctus
ENSMUSG00000018727	Cpsf4l	73	74.850	ENSEASG00005018763	CPSF4L	100	74.850	Equus_asinus_asinus
ENSMUSG00000018727	Cpsf4l	73	74.850	ENSECAG00000024813	CPSF4L	100	74.850	Equus_caballus
ENSMUSG00000018727	Cpsf4l	84	72.251	ENSFCAG00000004745	CPSF4L	74	72.251	Felis_catus
ENSMUSG00000018727	Cpsf4l	73	75.449	ENSGGOG00000026659	CPSF4L	93	75.449	Gorilla_gorilla
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSSTOG00000001849	CPSF4L	94	75.758	Ictidomys_tridecemlineatus
ENSMUSG00000018727	Cpsf4l	76	73.410	ENSLAFG00000010697	CPSF4L	98	73.410	Loxodonta_africana
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSMFAG00000037840	CPSF4L	92	75.758	Macaca_fascicularis
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSMMUG00000001271	CPSF4L	92	75.758	Macaca_mulatta
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSMNEG00000045419	CPSF4L	92	75.758	Macaca_nemestrina
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSMLEG00000038527	CPSF4L	92	75.758	Mandrillus_leucophaeus
ENSMUSG00000018727	Cpsf4l	75	80.870	ENSMAUG00000019519	-	100	82.635	Mesocricetus_auratus
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSMICG00000007503	CPSF4L	94	75.758	Microcebus_murinus
ENSMUSG00000018727	Cpsf4l	59	83.582	ENSMOCG00000015313	-	92	83.582	Microtus_ochrogaster
ENSMUSG00000018727	Cpsf4l	73	72.321	ENSMODG00000025672	CPSF4L	99	69.565	Monodelphis_domestica
ENSMUSG00000018727	Cpsf4l	100	96.078	MGP_CAROLIEiJ_G0017369	-	100	96.078	Mus_caroli
ENSMUSG00000018727	Cpsf4l	82	92.063	MGP_PahariEiJ_G0018499	-	82	92.063	Mus_pahari
ENSMUSG00000018727	Cpsf4l	100	96.732	MGP_SPRETEiJ_G0018215	-	100	96.732	Mus_spretus
ENSMUSG00000018727	Cpsf4l	77	69.492	ENSMPUG00000014276	CPSF4L	100	72.455	Mustela_putorius_furo
ENSMUSG00000018727	Cpsf4l	73	72.455	ENSMLUG00000009617	CPSF4L	93	72.455	Myotis_lucifugus
ENSMUSG00000018727	Cpsf4l	73	82.143	ENSNGAG00000009325	-	96	81.818	Nannospalax_galili
ENSMUSG00000018727	Cpsf4l	73	75.449	ENSNLEG00000001420	CPSF4L	93	75.449	Nomascus_leucogenys
ENSMUSG00000018727	Cpsf4l	66	71.287	ENSMEUG00000004051	-	99	71.287	Notamacropus_eugenii
ENSMUSG00000018727	Cpsf4l	71	66.972	ENSOPRG00000007484	-	96	58.955	Ochotona_princeps
ENSMUSG00000018727	Cpsf4l	82	65.600	ENSOCUG00000026495	CPSF4L	79	69.492	Oryctolagus_cuniculus
ENSMUSG00000018727	Cpsf4l	75	71.930	ENSPPAG00000037000	-	91	73.333	Pan_paniscus
ENSMUSG00000018727	Cpsf4l	67	71.845	ENSPPRG00000001058	CPSF4L	67	71.845	Panthera_pardus
ENSMUSG00000018727	Cpsf4l	67	71.845	ENSPTIG00000012676	CPSF4L	82	76.866	Panthera_tigris_altaica
ENSMUSG00000018727	Cpsf4l	73	75.449	ENSPTRG00000009598	CPSF4L	93	75.449	Pan_troglodytes
ENSMUSG00000018727	Cpsf4l	72	75.758	ENSPANG00000020331	CPSF4L	92	75.758	Papio_anubis
ENSMUSG00000018727	Cpsf4l	100	78.431	ENSPEMG00000011680	Cpsf4l	100	78.431	Peromyscus_maniculatus_bairdii
ENSMUSG00000018727	Cpsf4l	75	70.175	ENSPCIG00000001889	CPSF4L	98	68.263	Phascolarctos_cinereus
ENSMUSG00000018727	Cpsf4l	70	71.028	ENSPPYG00000008589	-	70	71.028	Pongo_abelii
ENSMUSG00000018727	Cpsf4l	71	75.926	ENSPCOG00000021801	CPSF4L	91	75.926	Propithecus_coquereli
ENSMUSG00000018727	Cpsf4l	67	67.961	ENSPVAG00000006736	CPSF4L	98	54.110	Pteropus_vampyrus
ENSMUSG00000018727	Cpsf4l	75	72.515	ENSRBIG00000029048	CPSF4L	99	72.515	Rhinopithecus_bieti
ENSMUSG00000018727	Cpsf4l	73	73.054	ENSRROG00000037051	CPSF4L	93	73.054	Rhinopithecus_roxellana
ENSMUSG00000018727	Cpsf4l	56	70.588	ENSTBEG00000012716	-	94	70.588	Tupaia_belangeri
ENSMUSG00000018727	Cpsf4l	70	71.963	ENSTTRG00000005243	CPSF4L	80	66.116	Tursiops_truncatus
ENSMUSG00000018727	Cpsf4l	59	77.612	ENSUAMG00000007728	CPSF4L	85	77.612	Ursus_americanus
ENSMUSG00000018727	Cpsf4l	59	77.612	ENSUMAG00000007869	CPSF4L	85	77.612	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process