EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018974 (Gene tree)
Gene ID: 53890
Gene Symbol: Sart3
Alias: -
Full Name: squamous cell carcinoma antigen recognized by T cells 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 30065 bases
Position: chr5:113742446-113772510
Accession: 1858230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000019118	Lsm_interact	PF05391.11	7.4e-06	1	1
ENSMUSP00000019118	RRM_1	PF00076.22	3.3e-32	1	2
ENSMUSP00000019118	RRM_1	PF00076.22	3.3e-32	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000198556	-	524	-	-	- (aa)	-	-
ENSMUST00000197041	-	3261	-	ENSMUSP00000143778	401 (aa)	-	Q9JLI8
ENSMUST00000196778	-	510	-	-	- (aa)	-	-
ENSMUST00000196738	-	744	-	-	- (aa)	-	-
ENSMUST00000198097	-	622	-	-	- (aa)	-	-
ENSMUST00000198246	-	606	-	-	- (aa)	-	-
ENSMUST00000019118	-	4447	XM_006530405	ENSMUSP00000019118	962 (aa)	XP_006530469	Q9JLI8

Gene Model

Click here to download ENSMUSG00000018974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018974	Sart3	100	87.033	ENSG00000075856	SART3	99	95.455	Homo_sapiens
ENSMUSG00000018974	Sart3	90	63.140	ENSAPOG00000007242	sart3	94	62.614	Acanthochromis_polyacanthus
ENSMUSG00000018974	Sart3	98	87.039	ENSAMEG00000016374	SART3	100	86.826	Ailuropoda_melanoleuca
ENSMUSG00000018974	Sart3	90	64.966	ENSACIG00000016452	sart3	96	63.020	Amphilophus_citrinellus
ENSMUSG00000018974	Sart3	90	63.440	ENSAOCG00000015094	sart3	94	63.265	Amphiprion_ocellaris
ENSMUSG00000018974	Sart3	90	63.098	ENSAPEG00000023696	sart3	94	62.925	Amphiprion_percula
ENSMUSG00000018974	Sart3	90	59.729	ENSATEG00000009882	sart3	96	61.899	Anabas_testudineus
ENSMUSG00000018974	Sart3	81	70.440	ENSAPLG00000006205	SART3	97	70.440	Anas_platyrhynchos
ENSMUSG00000018974	Sart3	90	67.105	ENSACAG00000001176	SART3	94	66.631	Anolis_carolinensis
ENSMUSG00000018974	Sart3	100	87.033	ENSANAG00000025967	SART3	100	87.033	Aotus_nancymaae
ENSMUSG00000018974	Sart3	90	63.929	ENSACLG00000025832	sart3	96	62.058	Astatotilapia_calliptera
ENSMUSG00000018974	Sart3	92	61.117	ENSAMXG00000019143	sart3	92	61.496	Astyanax_mexicanus
ENSMUSG00000018974	Sart3	98	85.248	ENSBTAG00000031846	SART3	100	85.062	Bos_taurus
ENSMUSG00000018974	Sart3	100	85.336	ENSCJAG00000015330	SART3	100	85.336	Callithrix_jacchus
ENSMUSG00000018974	Sart3	100	86.826	ENSCAFG00000011352	SART3	89	86.826	Canis_familiaris
ENSMUSG00000018974	Sart3	100	86.826	ENSCAFG00020022271	SART3	100	86.826	Canis_lupus_dingo
ENSMUSG00000018974	Sart3	98	83.351	ENSCHIG00000021385	SART3	100	83.198	Capra_hircus
ENSMUSG00000018974	Sart3	100	85.581	ENSTSYG00000013923	SART3	100	85.581	Carlito_syrichta
ENSMUSG00000018974	Sart3	89	88.708	ENSCAPG00000013404	SART3	99	88.708	Cavia_aperea
ENSMUSG00000018974	Sart3	100	86.826	ENSCPOG00000010969	SART3	100	86.826	Cavia_porcellus
ENSMUSG00000018974	Sart3	100	87.344	ENSCCAG00000023667	SART3	100	87.344	Cebus_capucinus
ENSMUSG00000018974	Sart3	100	86.049	ENSCATG00000041537	SART3	100	86.049	Cercocebus_atys
ENSMUSG00000018974	Sart3	100	87.656	ENSCLAG00000011727	SART3	100	87.552	Chinchilla_lanigera
ENSMUSG00000018974	Sart3	100	87.656	ENSCSAG00000002880	SART3	100	87.656	Chlorocebus_sabaeus
ENSMUSG00000018974	Sart3	84	75.845	ENSCPBG00000006699	SART3	92	75.481	Chrysemys_picta_bellii
ENSMUSG00000018974	Sart3	90	39.576	ENSCING00000009762	-	98	39.576	Ciona_intestinalis
ENSMUSG00000018974	Sart3	100	85.947	ENSCANG00000000411	SART3	100	85.947	Colobus_angolensis_palliatus
ENSMUSG00000018974	Sart3	100	93.659	ENSCGRG00001020554	Sart3	100	93.659	Cricetulus_griseus_chok1gshd
ENSMUSG00000018974	Sart3	85	94.963	ENSCGRG00000005968	Sart3	100	94.963	Cricetulus_griseus_crigri
ENSMUSG00000018974	Sart3	60	61.631	ENSCSEG00000011951	sart3	69	61.774	Cynoglossus_semilaevis
ENSMUSG00000018974	Sart3	90	62.514	ENSCVAG00000022898	sart3	94	62.528	Cyprinodon_variegatus
ENSMUSG00000018974	Sart3	90	61.436	ENSDARG00000008032	sart3	94	61.369	Danio_rerio
ENSMUSG00000018974	Sart3	98	83.665	ENSDNOG00000019498	SART3	100	83.299	Dasypus_novemcinctus
ENSMUSG00000018974	Sart3	94	82.314	ENSDORG00000014360	Sart3	100	79.979	Dipodomys_ordii
ENSMUSG00000018974	Sart3	59	39.706	FBgn0014024	Rnp4F	51	39.706	Drosophila_melanogaster
ENSMUSG00000018974	Sart3	66	92.258	ENSETEG00000011292	SART3	78	92.258	Echinops_telfairi
ENSMUSG00000018974	Sart3	93	37.806	ENSEBUG00000005658	sart3	92	38.293	Eptatretus_burgeri
ENSMUSG00000018974	Sart3	100	86.411	ENSEASG00005014500	SART3	100	86.515	Equus_asinus_asinus
ENSMUSG00000018974	Sart3	100	86.307	ENSECAG00000000314	SART3	100	86.411	Equus_caballus
ENSMUSG00000018974	Sart3	100	77.226	ENSEEUG00000002954	SART3	100	76.708	Erinaceus_europaeus
ENSMUSG00000018974	Sart3	90	62.156	ENSELUG00000013025	sart3	97	60.764	Esox_lucius
ENSMUSG00000018974	Sart3	98	87.250	ENSFCAG00000014041	SART3	100	87.033	Felis_catus
ENSMUSG00000018974	Sart3	89	73.182	ENSFALG00000008894	SART3	100	73.182	Ficedula_albicollis
ENSMUSG00000018974	Sart3	100	86.515	ENSFDAG00000014878	SART3	100	86.307	Fukomys_damarensis
ENSMUSG00000018974	Sart3	90	61.204	ENSFHEG00000015715	sart3	94	61.326	Fundulus_heteroclitus
ENSMUSG00000018974	Sart3	90	59.511	ENSGMOG00000017859	sart3	98	59.733	Gadus_morhua
ENSMUSG00000018974	Sart3	94	73.149	ENSGALG00000039472	SART3	94	72.380	Gallus_gallus
ENSMUSG00000018974	Sart3	90	61.564	ENSGAFG00000018055	sart3	94	61.136	Gambusia_affinis
ENSMUSG00000018974	Sart3	91	60.789	ENSGACG00000008787	sart3	98	61.068	Gasterosteus_aculeatus
ENSMUSG00000018974	Sart3	90	74.859	ENSGAGG00000016519	SART3	95	74.523	Gopherus_agassizii
ENSMUSG00000018974	Sart3	100	87.137	ENSGGOG00000011562	SART3	100	87.137	Gorilla_gorilla
ENSMUSG00000018974	Sart3	90	63.636	ENSHBUG00000005247	sart3	96	62.099	Haplochromis_burtoni
ENSMUSG00000018974	Sart3	100	86.722	ENSHGLG00000011579	SART3	100	86.515	Heterocephalus_glaber_female
ENSMUSG00000018974	Sart3	100	84.129	ENSHGLG00100013263	SART3	100	83.921	Heterocephalus_glaber_male
ENSMUSG00000018974	Sart3	90	55.011	ENSHCOG00000009693	sart3	93	56.483	Hippocampus_comes
ENSMUSG00000018974	Sart3	90	62.306	ENSIPUG00000021151	sart3	94	61.240	Ictalurus_punctatus
ENSMUSG00000018974	Sart3	100	85.788	ENSSTOG00000002376	SART3	100	85.803	Ictidomys_tridecemlineatus
ENSMUSG00000018974	Sart3	99	86.743	ENSJJAG00000021869	Sart3	100	85.655	Jaculus_jaculus
ENSMUSG00000018974	Sart3	90	63.586	ENSKMAG00000016864	sart3	94	63.616	Kryptolebias_marmoratus
ENSMUSG00000018974	Sart3	90	61.996	ENSLBEG00000001263	sart3	94	62.108	Labrus_bergylta
ENSMUSG00000018974	Sart3	72	53.279	ENSLACG00000007414	SART3	94	53.279	Latimeria_chalumnae
ENSMUSG00000018974	Sart3	92	65.189	ENSLOCG00000004710	sart3	91	65.604	Lepisosteus_oculatus
ENSMUSG00000018974	Sart3	98	86.897	ENSLAFG00000007167	SART3	100	86.331	Loxodonta_africana
ENSMUSG00000018974	Sart3	100	86.049	ENSMFAG00000039887	SART3	100	86.049	Macaca_fascicularis
ENSMUSG00000018974	Sart3	100	86.049	ENSMMUG00000017124	SART3	100	86.049	Macaca_mulatta
ENSMUSG00000018974	Sart3	100	86.049	ENSMNEG00000011093	SART3	100	86.049	Macaca_nemestrina
ENSMUSG00000018974	Sart3	100	86.151	ENSMLEG00000034251	SART3	100	86.151	Mandrillus_leucophaeus
ENSMUSG00000018974	Sart3	90	62.472	ENSMAMG00000016195	sart3	94	63.111	Mastacembelus_armatus
ENSMUSG00000018974	Sart3	90	63.596	ENSMZEG00005015248	sart3	96	62.058	Maylandia_zebra
ENSMUSG00000018974	Sart3	89	73.720	ENSMGAG00000005746	SART3	100	73.643	Meleagris_gallopavo
ENSMUSG00000018974	Sart3	100	93.035	ENSMAUG00000012434	Sart3	100	92.723	Mesocricetus_auratus
ENSMUSG00000018974	Sart3	100	85.462	ENSMICG00000013052	SART3	100	84.631	Microcebus_murinus
ENSMUSG00000018974	Sart3	100	93.659	ENSMOCG00000004078	Sart3	100	93.659	Microtus_ochrogaster
ENSMUSG00000018974	Sart3	90	63.832	ENSMMOG00000017629	sart3	94	63.523	Mola_mola
ENSMUSG00000018974	Sart3	90	76.464	ENSMODG00000002859	SART3	94	74.620	Monodelphis_domestica
ENSMUSG00000018974	Sart3	90	62.472	ENSMALG00000014549	sart3	89	62.165	Monopterus_albus
ENSMUSG00000018974	Sart3	100	99.168	MGP_CAROLIEiJ_G0027580	Sart3	100	99.168	Mus_caroli
ENSMUSG00000018974	Sart3	100	96.674	MGP_PahariEiJ_G0024162	Sart3	100	96.674	Mus_pahari
ENSMUSG00000018974	Sart3	100	99.584	MGP_SPRETEiJ_G0028578	Sart3	100	99.584	Mus_spretus
ENSMUSG00000018974	Sart3	98	86.934	ENSMPUG00000003402	SART3	91	86.722	Mustela_putorius_furo
ENSMUSG00000018974	Sart3	100	86.214	ENSMLUG00000007906	SART3	100	85.685	Myotis_lucifugus
ENSMUSG00000018974	Sart3	99	90.000	ENSNGAG00000014773	Sart3	100	89.512	Nannospalax_galili
ENSMUSG00000018974	Sart3	90	63.818	ENSNBRG00000008526	sart3	97	62.272	Neolamprologus_brichardi
ENSMUSG00000018974	Sart3	100	86.151	ENSNLEG00000006767	SART3	100	86.151	Nomascus_leucogenys
ENSMUSG00000018974	Sart3	89	75.638	ENSMEUG00000006799	SART3	100	75.638	Notamacropus_eugenii
ENSMUSG00000018974	Sart3	100	83.091	ENSOPRG00000015817	SART3	100	83.091	Ochotona_princeps
ENSMUSG00000018974	Sart3	100	86.826	ENSODEG00000008547	SART3	100	86.618	Octodon_degus
ENSMUSG00000018974	Sart3	90	64.000	ENSONIG00000013413	sart3	96	62.379	Oreochromis_niloticus
ENSMUSG00000018974	Sart3	89	72.924	ENSOANG00000008794	SART3	100	72.924	Ornithorhynchus_anatinus
ENSMUSG00000018974	Sart3	100	87.668	ENSOCUG00000016285	SART3	100	87.668	Oryctolagus_cuniculus
ENSMUSG00000018974	Sart3	90	63.252	ENSORLG00000006895	sart3	99	61.637	Oryzias_latipes
ENSMUSG00000018974	Sart3	90	63.363	ENSORLG00020015473	sart3	97	62.352	Oryzias_latipes_hni
ENSMUSG00000018974	Sart3	90	63.004	ENSORLG00015003914	sart3	97	61.998	Oryzias_latipes_hsok
ENSMUSG00000018974	Sart3	90	63.464	ENSOMEG00000002174	sart3	94	63.087	Oryzias_melastigma
ENSMUSG00000018974	Sart3	100	85.744	ENSOGAG00000000932	SART3	100	85.021	Otolemur_garnettii
ENSMUSG00000018974	Sart3	98	83.857	ENSOARG00000018082	SART3	100	83.695	Ovis_aries
ENSMUSG00000018974	Sart3	100	85.438	ENSPPAG00000041812	SART3	100	85.438	Pan_paniscus
ENSMUSG00000018974	Sart3	98	87.144	ENSPPRG00000001579	SART3	100	86.929	Panthera_pardus
ENSMUSG00000018974	Sart3	98	87.250	ENSPTIG00000021928	SART3	100	87.033	Panthera_tigris_altaica
ENSMUSG00000018974	Sart3	100	85.336	ENSPTRG00000005404	SART3	100	85.336	Pan_troglodytes
ENSMUSG00000018974	Sart3	100	86.151	ENSPANG00000024915	SART3	100	86.151	Papio_anubis
ENSMUSG00000018974	Sart3	96	61.028	ENSPKIG00000025203	sart3	94	63.284	Paramormyrops_kingsleyae
ENSMUSG00000018974	Sart3	89	74.044	ENSPSIG00000002594	SART3	100	74.044	Pelodiscus_sinensis
ENSMUSG00000018974	Sart3	94	60.302	ENSPMGG00000018729	sart3	94	61.036	Periophthalmus_magnuspinnatus
ENSMUSG00000018974	Sart3	89	92.102	ENSPEMG00000020811	-	94	92.102	Peromyscus_maniculatus_bairdii
ENSMUSG00000018974	Sart3	90	77.288	ENSPCIG00000023889	SART3	99	72.284	Phascolarctos_cinereus
ENSMUSG00000018974	Sart3	90	62.403	ENSPFOG00000010290	sart3	94	61.947	Poecilia_formosa
ENSMUSG00000018974	Sart3	90	62.403	ENSPLAG00000002711	sart3	94	61.889	Poecilia_latipinna
ENSMUSG00000018974	Sart3	90	61.778	ENSPMEG00000000456	sart3	94	61.768	Poecilia_mexicana
ENSMUSG00000018974	Sart3	90	62.264	ENSPREG00000022086	sart3	95	61.973	Poecilia_reticulata
ENSMUSG00000018974	Sart3	100	87.241	ENSPPYG00000004919	SART3	100	87.241	Pongo_abelii
ENSMUSG00000018974	Sart3	100	76.836	ENSPCAG00000007505	SART3	100	76.836	Procavia_capensis
ENSMUSG00000018974	Sart3	100	77.905	ENSPCOG00000014016	SART3	100	77.178	Propithecus_coquereli
ENSMUSG00000018974	Sart3	100	82.884	ENSPVAG00000007442	SART3	100	82.884	Pteropus_vampyrus
ENSMUSG00000018974	Sart3	90	63.636	ENSPNYG00000015653	sart3	96	62.099	Pundamilia_nyererei
ENSMUSG00000018974	Sart3	92	61.697	ENSPNAG00000001851	sart3	94	62.264	Pygocentrus_nattereri
ENSMUSG00000018974	Sart3	100	93.154	ENSRNOG00000000702	Sart3	100	92.946	Rattus_norvegicus
ENSMUSG00000018974	Sart3	100	87.656	ENSRBIG00000034143	SART3	100	87.656	Rhinopithecus_bieti
ENSMUSG00000018974	Sart3	100	87.552	ENSRROG00000003629	SART3	100	87.552	Rhinopithecus_roxellana
ENSMUSG00000018974	Sart3	100	84.440	ENSSBOG00000033093	SART3	100	84.440	Saimiri_boliviensis_boliviensis
ENSMUSG00000018974	Sart3	89	76.705	ENSSHAG00000010864	SART3	100	76.705	Sarcophilus_harrisii
ENSMUSG00000018974	Sart3	96	62.920	ENSSFOG00015004012	sart3	91	65.622	Scleropages_formosus
ENSMUSG00000018974	Sart3	90	61.857	ENSSMAG00000014666	sart3	98	60.323	Scophthalmus_maximus
ENSMUSG00000018974	Sart3	90	62.183	ENSSDUG00000011664	sart3	94	60.970	Seriola_dumerili
ENSMUSG00000018974	Sart3	90	62.514	ENSSLDG00000024990	sart3	88	62.749	Seriola_lalandi_dorsalis
ENSMUSG00000018974	Sart3	84	86.541	ENSSARG00000005401	SART3	83	87.200	Sorex_araneus
ENSMUSG00000018974	Sart3	87	73.481	ENSSPUG00000009541	SART3	92	73.108	Sphenodon_punctatus
ENSMUSG00000018974	Sart3	90	63.281	ENSSPAG00000010658	sart3	94	62.793	Stegastes_partitus
ENSMUSG00000018974	Sart3	98	86.091	ENSSSCG00000009946	SART3	99	85.892	Sus_scrofa
ENSMUSG00000018974	Sart3	90	73.869	ENSTGUG00000006905	SART3	99	73.761	Taeniopygia_guttata
ENSMUSG00000018974	Sart3	90	61.478	ENSTRUG00000014173	sart3	94	61.142	Takifugu_rubripes
ENSMUSG00000018974	Sart3	90	61.376	ENSTNIG00000015867	sart3	99	61.453	Tetraodon_nigroviridis
ENSMUSG00000018974	Sart3	92	84.014	ENSTBEG00000008888	SART3	99	82.988	Tupaia_belangeri
ENSMUSG00000018974	Sart3	98	84.332	ENSTTRG00000003993	SART3	100	84.576	Tursiops_truncatus
ENSMUSG00000018974	Sart3	98	86.617	ENSUAMG00000023906	SART3	100	86.411	Ursus_americanus
ENSMUSG00000018974	Sart3	93	88.229	ENSUMAG00000005844	SART3	98	88.175	Ursus_maritimus
ENSMUSG00000018974	Sart3	56	86.290	ENSVPAG00000009997	-	64	86.290	Vicugna_pacos
ENSMUSG00000018974	Sart3	98	87.131	ENSVVUG00000008216	SART3	100	86.826	Vulpes_vulpes
ENSMUSG00000018974	Sart3	90	65.737	ENSXETG00000017645	sart3	96	65.444	Xenopus_tropicalis
ENSMUSG00000018974	Sart3	90	63.051	ENSXCOG00000017212	sart3	94	62.896	Xiphophorus_couchianus
ENSMUSG00000018974	Sart3	90	61.905	ENSXMAG00000018160	sart3	94	61.581	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISO	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000387	spliceosomal snRNP assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000902	cell morphogenesis	21447833.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	10761712.	ISO	Function
GO:0005634	nucleus	10761712.	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	12578909.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005691	U6atac snRNP	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0010468	regulation of gene expression	21447833.	ISO	Process
GO:0015030	Cajal body	12578909.	IDA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0017070	U6 snRNA binding	-	ISO	Function
GO:0030624	U6atac snRNA binding	-	ISO	Function
GO:0042393	histone binding	-	ISO	Function
GO:0048872	homeostasis of number of cells	21447833.	IMP	Process
GO:0061574	ASAP complex	21873635.	IBA	Component
GO:0071001	U4/U6 snRNP	-	ISO	Component
GO:0071425	hematopoietic stem cell proliferation	21447833.	IMP	Process
GO:1903586	positive regulation of histone deubiquitination	-	ISO	Process
GO:1990381	ubiquitin-specific protease binding	-	ISO	Function