EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000143747	-	528	-	-	- (aa)	-	-
ENSMUST00000138101	-	1112	-	ENSMUSP00000136225	51 (aa)	-	J3QMC8
ENSMUST00000200556	-	648	-	ENSMUSP00000142993	199 (aa)	-	A0A0G2JF23
ENSMUST00000019323	-	1456	-	ENSMUSP00000019323	338 (aa)	-	P08249
ENSMUST00000130795	-	725	-	-	- (aa)	-	-
ENSMUST00000196285	-	506	-	ENSMUSP00000143748	153 (aa)	-	A0A0G2JGY4
ENSMUST00000197909	-	1606	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu00270	Cysteine and methionine metabolism	KEGG
mmu00620	Pyruvate metabolism	KEGG
mmu00630	Glyoxylate and dicarboxylate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019179	Mdh2	97	57.012	WBGene00003162	mdh-2	96	57.012	Caenorhabditis_elegans
ENSMUSG00000019179	Mdh2	94	62.382	FBgn0262559	Mdh2	95	62.382	Drosophila_melanogaster
ENSMUSG00000019179	Mdh2	100	94.970	ENSG00000146701	MDH2	100	94.970	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003824	catalytic activity	-	IEA	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	15809022.	ISA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005759	mitochondrial matrix	-	ISO	Component
GO:0005975	carbohydrate metabolic process	-	IEA	Process
GO:0006099	tricarboxylic acid cycle	-	ISO	Process
GO:0006107	oxaloacetate metabolic process	-	ISO	Process
GO:0006108	malate metabolic process	15809022.	ISA	Process
GO:0006108	malate metabolic process	-	ISO	Process
GO:0006475	internal protein amino acid acetylation	-	ISO	Process
GO:0006734	NADH metabolic process	-	ISO	Process
GO:0009060	aerobic respiration	-	ISO	Process
GO:0016020	membrane	20080761.	IMP	Component
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016615	malate dehydrogenase activity	15809022.	ISA	Function
GO:0016615	malate dehydrogenase activity	-	ISO	Function
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0019752	carboxylic acid metabolic process	-	IEA	Process
GO:0030060	L-malate dehydrogenase activity	5496232.	IDA	Function
GO:0030060	L-malate dehydrogenase activity	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043621	protein self-association	-	ISO	Function
GO:0046554	malate dehydrogenase (NADP+) activity	-	ISO	Function
GO:0055114	oxidation-reduction process	-	IEA	Process