EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000151554	-	828	-	-	- (aa)	-	-
ENSMUST00000092663	-	3813	-	ENSMUSP00000090333	832 (aa)	-	Q9Z1G4
ENSMUST00000044721	-	4008	XM_006532049	ENSMUSP00000044838	838 (aa)	XP_006532112	Q9Z1G4
ENSMUST00000139619	-	373	-	ENSMUSP00000121247	79 (aa)	-	A2A599
ENSMUST00000134919	-	384	-	-	- (aa)	-	-
ENSMUST00000139857	-	844	-	-	- (aa)	-	-
ENSMUST00000103110	-	2716	XM_006532051	ENSMUSP00000099399	839 (aa)	XP_006532114	Q9Z1G4
ENSMUST00000154896	-	4162	-	-	- (aa)	-	-
ENSMUST00000127810	-	504	-	-	- (aa)	-	-
ENSMUST00000168757	-	3967	-	ENSMUSP00000131848	838 (aa)	-	K3W4T3

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04142	Lysosome	KEGG
mmu04145	Phagosome	KEGG
mmu04721	Synaptic vesicle cycle	KEGG
mmu04966	Collecting duct acid secretion	KEGG
mmu05152	Tuberculosis	KEGG
mmu05165	Human papillomavirus infection	KEGG
mmu05323	Rheumatoid arthritis	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000220	vacuolar proton-transporting V-type ATPase, V0 domain	-	IEA	Component
GO:0005515	protein binding	20541250.	IPI	Function
GO:0005737	cytoplasm	10722719.	IDA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006811	ion transport	-	IEA	Process
GO:0007035	vacuolar acidification	21873635.	IBA	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0015078	proton transmembrane transporter activity	-	IEA	Function
GO:0015991	ATP hydrolysis coupled proton transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016241	regulation of macroautophagy	-	ISO	Process
GO:0016471	vacuolar proton-transporting V-type ATPase complex	21873635.	IBA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0030285	integral component of synaptic vesicle membrane	-	ISO	Component
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0033179	proton-transporting V-type ATPase, V0 domain	-	IEA	Component
GO:0043229	intracellular organelle	12672822.	IDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0046961	proton-transporting ATPase activity, rotational mechanism	21873635.	IBA	Function
GO:0048471	perinuclear region of cytoplasm	19549681.	IDA	Component
GO:0051117	ATPase binding	21873635.	IBA	Function
GO:0051117	ATPase binding	-	ISO	Function
GO:1901998	toxin transport	23716698.	IMP	Process