EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000019432 (Gene tree)
Gene ID: 53817
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|Bat-1|Bat1|Bat1a|D17H6S81E-1
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 11962 bases
Position: chr17:35241746-35253707
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000133705	ResIII	PF04851.15	1.2e-07	1	1
ENSMUSP00000070682	ResIII	PF04851.15	2.9e-07	1	1
ENSMUSP00000133428	ResIII	PF04851.15	2.9e-07	1	1
ENSMUSP00000134178	ResIII	PF04851.15	2.9e-07	1	1
ENSMUSP00000070682	DEAD	PF00270.29	1.5e-38	1	1
ENSMUSP00000133428	DEAD	PF00270.29	1.5e-38	1	1
ENSMUSP00000134178	DEAD	PF00270.29	1.5e-38	1	1
ENSMUSP00000133705	DEAD	PF00270.29	5.2e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000068056	-	1739	-	ENSMUSP00000070682	428 (aa)	-	Q9Z1N5
ENSMUST00000174795	-	740	-	-	- (aa)	-	-
ENSMUST00000174757	-	759	-	ENSMUSP00000133705	148 (aa)	-	G3UXI6
ENSMUST00000173731	-	2848	-	ENSMUSP00000133428	428 (aa)	-	Q9Z1N5
ENSMUST00000174164	-	1711	-	-	- (aa)	-	-
ENSMUST00000172549	-	1770	-	ENSMUSP00000134178	428 (aa)	-	Q9Z1N5

Gene Model

Click here to download ENSMUSG00000019432's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000019432's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000019432	Ddx39b	99	36.424	ENSMUSG00000017999	Ddx27	54	31.655
ENSMUSG00000019432	Ddx39b	99	31.792	ENSMUSG00000000787	Ddx3x	56	30.105
ENSMUSG00000019432	Ddx39b	99	36.486	ENSMUSG00000030204	Ddx47	90	31.926
ENSMUSG00000019432	Ddx39b	99	37.415	ENSMUSG00000094973	Gm8994	88	37.808
ENSMUSG00000019432	Ddx39b	99	37.415	ENSMUSG00000107906	Gm5580	88	38.082
ENSMUSG00000019432	Ddx39b	99	37.415	ENSMUSG00000025580	Eif4a3	88	38.356
ENSMUSG00000019432	Ddx39b	77	30.029	ENSMUSG00000020719	Ddx5	55	30.029
ENSMUSG00000019432	Ddx39b	99	40.816	ENSMUSG00000022884	Eif4a2	90	38.919
ENSMUSG00000019432	Ddx39b	99	38.776	ENSMUSG00000059796	Eif4a1	95	36.802
ENSMUSG00000019432	Ddx39b	99	34.014	ENSMUSG00000032097	Ddx6	79	35.659
ENSMUSG00000019432	Ddx39b	99	35.135	ENSMUSG00000032101	Ddx25	82	32.020
ENSMUSG00000019432	Ddx39b	100	90.888	ENSMUSG00000005481	Ddx39	100	90.888
ENSMUSG00000019432	Ddx39b	99	37.162	ENSMUSG00000033658	Ddx19b	82	33.083
ENSMUSG00000019432	Ddx39b	99	36.667	ENSMUSG00000057788	Ddx49	78	32.891
ENSMUSG00000019432	Ddx39b	99	31.792	ENSMUSG00000039224	D1Pas1	57	30.105
ENSMUSG00000019432	Ddx39b	99	36.486	ENSMUSG00000015023	Ddx19a	82	32.832

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019432	Ddx39b	100	100.000	ENSG00000198563	DDX39B	100	99.533	Homo_sapiens
ENSMUSG00000019432	Ddx39b	100	100.000	ENSAMEG00000009508	DDX39B	99	99.299	Ailuropoda_melanoleuca
ENSMUSG00000019432	Ddx39b	100	96.622	ENSACIG00000004534	ddx39b	98	93.443	Amphilophus_citrinellus
ENSMUSG00000019432	Ddx39b	100	95.946	ENSATEG00000012366	ddx39b	100	92.593	Anabas_testudineus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSACAG00000012240	DDX39B	100	96.970	Anolis_carolinensis
ENSMUSG00000019432	Ddx39b	100	100.000	ENSANAG00000030372	DDX39B	100	99.533	Aotus_nancymaae
ENSMUSG00000019432	Ddx39b	100	94.595	ENSACLG00000018759	ddx39b	99	90.553	Astatotilapia_calliptera
ENSMUSG00000019432	Ddx39b	100	95.270	ENSAMXG00000017837	ddx39b	100	92.661	Astyanax_mexicanus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSBTAG00000014490	DDX39B	100	99.299	Bos_taurus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCJAG00000003152	DDX39B	100	99.533	Callithrix_jacchus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCAFG00000000509	DDX39B	100	100.000	Canis_familiaris
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCAFG00020020530	DDX39B	100	99.299	Canis_lupus_dingo
ENSMUSG00000019432	Ddx39b	100	99.324	ENSCHIG00000004579	DDX39B	100	99.299	Capra_hircus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSTSYG00000010226	-	100	99.533	Carlito_syrichta
ENSMUSG00000019432	Ddx39b	100	91.216	ENSTSYG00000029741	-	91	87.619	Carlito_syrichta
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCAPG00000010066	DDX39B	100	99.299	Cavia_aperea
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCPOG00000002335	DDX39B	100	99.299	Cavia_porcellus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCCAG00000027897	DDX39B	100	99.533	Cebus_capucinus
ENSMUSG00000019432	Ddx39b	98	93.793	ENSCATG00000043709	DDX39B	99	89.882	Cercocebus_atys
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCLAG00000014555	DDX39B	100	99.299	Chinchilla_lanigera
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCSAG00000008517	DDX39B	100	99.294	Chlorocebus_sabaeus
ENSMUSG00000019432	Ddx39b	64	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSMUSG00000019432	Ddx39b	100	100.000	ENSCANG00000041217	DDX39B	100	99.533	Colobus_angolensis_palliatus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSCGRG00001017315	-	95	99.029	Cricetulus_griseus_chok1gshd
ENSMUSG00000019432	Ddx39b	83	96.774	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
ENSMUSG00000019432	Ddx39b	83	98.374	ENSCGRG00000000078	-	90	98.537	Cricetulus_griseus_crigri
ENSMUSG00000019432	Ddx39b	100	99.324	ENSCGRG00000012479	-	76	99.184	Cricetulus_griseus_crigri
ENSMUSG00000019432	Ddx39b	100	95.946	ENSDARG00000036069	ddx39b	100	92.184	Danio_rerio
ENSMUSG00000019432	Ddx39b	100	100.000	ENSDNOG00000010215	DDX39B	100	99.533	Dasypus_novemcinctus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSDORG00000004985	Ddx39b	100	99.198	Dipodomys_ordii
ENSMUSG00000019432	Ddx39b	100	99.324	ENSETEG00000009649	DDX39B	87	86.364	Echinops_telfairi
ENSMUSG00000019432	Ddx39b	100	100.000	ENSEASG00005017156	DDX39B	100	99.533	Equus_asinus_asinus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSECAG00000007750	DDX39B	100	99.533	Equus_caballus
ENSMUSG00000019432	Ddx39b	100	93.919	ENSELUG00000017904	ddx39b	100	91.860	Esox_lucius
ENSMUSG00000019432	Ddx39b	100	100.000	ENSFCAG00000004497	DDX39B	100	99.299	Felis_catus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSFDAG00000011074	DDX39B	100	99.299	Fukomys_damarensis
ENSMUSG00000019432	Ddx39b	80	99.153	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
ENSMUSG00000019432	Ddx39b	100	100.000	ENSGGOG00000005989	DDX39B	100	99.533	Gorilla_gorilla
ENSMUSG00000019432	Ddx39b	83	92.683	ENSHBUG00000022054	-	77	87.560	Haplochromis_burtoni
ENSMUSG00000019432	Ddx39b	100	100.000	ENSHGLG00000019248	DDX39B	100	99.299	Heterocephalus_glaber_female
ENSMUSG00000019432	Ddx39b	100	100.000	ENSHGLG00100011850	DDX39B	100	99.299	Heterocephalus_glaber_male
ENSMUSG00000019432	Ddx39b	100	94.595	ENSIPUG00000015733	DDX39B	94	91.514	Ictalurus_punctatus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSSTOG00000012838	DDX39B	100	99.065	Ictidomys_tridecemlineatus
ENSMUSG00000019432	Ddx39b	100	98.832	ENSJJAG00000005660	-	100	98.832	Jaculus_jaculus
ENSMUSG00000019432	Ddx39b	100	79.730	ENSLBEG00000017177	-	81	79.078	Labrus_bergylta
ENSMUSG00000019432	Ddx39b	100	79.730	ENSLBEG00000012254	ddx39b	99	77.986	Labrus_bergylta
ENSMUSG00000019432	Ddx39b	100	89.631	ENSLACG00000002110	DDX39B	100	89.631	Latimeria_chalumnae
ENSMUSG00000019432	Ddx39b	100	100.000	ENSLAFG00000014202	DDX39B	100	99.299	Loxodonta_africana
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMFAG00000034233	DDX39B	100	99.533	Macaca_fascicularis
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMMUG00000008839	DDX39B	100	99.533	Macaca_mulatta
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMNEG00000041059	DDX39B	100	99.533	Macaca_nemestrina
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMLEG00000043791	DDX39B	100	99.533	Mandrillus_leucophaeus
ENSMUSG00000019432	Ddx39b	100	94.595	ENSMZEG00005017654	ddx39b	99	90.553	Maylandia_zebra
ENSMUSG00000019432	Ddx39b	100	99.324	ENSMAUG00000008059	Ddx39b	100	99.299	Mesocricetus_auratus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMICG00000017349	DDX39B	100	99.533	Microcebus_murinus
ENSMUSG00000019432	Ddx39b	100	99.533	ENSMOCG00000011169	Ddx39b	100	99.533	Microtus_ochrogaster
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMODG00000015791	DDX39B	88	99.202	Monodelphis_domestica
ENSMUSG00000019432	Ddx39b	66	97.938	MGP_CAROLIEiJ_G0021519	-	97	98.883	Mus_caroli
ENSMUSG00000019432	Ddx39b	100	100.000	MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	Mus_pahari
ENSMUSG00000019432	Ddx39b	100	100.000	MGP_SPRETEiJ_G0022424	Ddx39b	100	100.000	Mus_spretus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSMPUG00000011407	DDX39B	100	99.299	Mustela_putorius_furo
ENSMUSG00000019432	Ddx39b	76	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSNGAG00000022948	Ddx39b	100	99.533	Nannospalax_galili
ENSMUSG00000019432	Ddx39b	100	75.467	ENSNLEG00000006094	DDX39B	100	75.467	Nomascus_leucogenys
ENSMUSG00000019432	Ddx39b	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSMUSG00000019432	Ddx39b	100	100.000	ENSOPRG00000011923	DDX39B	100	99.299	Ochotona_princeps
ENSMUSG00000019432	Ddx39b	100	100.000	ENSODEG00000018083	DDX39B	100	99.065	Octodon_degus
ENSMUSG00000019432	Ddx39b	100	93.919	ENSONIG00000004740	ddx39b	100	91.667	Oreochromis_niloticus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSOANG00000008361	DDX39B	95	98.312	Ornithorhynchus_anatinus
ENSMUSG00000019432	Ddx39b	100	95.711	ENSOCUG00000024126	DDX39B	100	95.711	Oryctolagus_cuniculus
ENSMUSG00000019432	Ddx39b	87	96.899	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
ENSMUSG00000019432	Ddx39b	100	98.658	ENSOGAG00000028850	-	100	98.135	Otolemur_garnettii
ENSMUSG00000019432	Ddx39b	100	99.324	ENSOARG00000008787	DDX39B	98	99.299	Ovis_aries
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPPAG00000043072	DDX39B	100	99.533	Pan_paniscus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPPRG00000001913	DDX39B	100	99.299	Panthera_pardus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSPTIG00000017669	DDX39B	100	98.598	Panthera_tigris_altaica
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPTRG00000032509	DDX39B	100	99.533	Pan_troglodytes
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPANG00000018609	DDX39B	100	99.533	Papio_anubis
ENSMUSG00000019432	Ddx39b	100	94.595	ENSPKIG00000011324	ddx39b	100	91.304	Paramormyrops_kingsleyae
ENSMUSG00000019432	Ddx39b	100	99.766	ENSPEMG00000016905	Ddx39b	100	99.766	Peromyscus_maniculatus_bairdii
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPCIG00000017572	DDX39B	100	99.533	Phascolarctos_cinereus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPPYG00000016433	DDX39B	100	99.533	Pongo_abelii
ENSMUSG00000019432	Ddx39b	66	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPCOG00000018656	DDX39B	100	99.533	Propithecus_coquereli
ENSMUSG00000019432	Ddx39b	100	100.000	ENSPVAG00000004653	DDX39B	100	99.533	Pteropus_vampyrus
ENSMUSG00000019432	Ddx39b	99	82.670	ENSPNYG00000010382	ddx39b	98	82.670	Pundamilia_nyererei
ENSMUSG00000019432	Ddx39b	100	95.270	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
ENSMUSG00000019432	Ddx39b	100	100.000	ENSRNOG00000000841	Ddx39b	100	100.000	Rattus_norvegicus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSRBIG00000031309	DDX39B	100	89.252	Rhinopithecus_bieti
ENSMUSG00000019432	Ddx39b	100	100.000	ENSRROG00000039517	DDX39B	100	99.533	Rhinopithecus_roxellana
ENSMUSG00000019432	Ddx39b	100	100.000	ENSSBOG00000035513	-	100	89.252	Saimiri_boliviensis_boliviensis
ENSMUSG00000019432	Ddx39b	100	100.000	ENSSHAG00000003209	DDX39B	100	99.533	Sarcophilus_harrisii
ENSMUSG00000019432	Ddx39b	100	94.595	ENSSFOG00015016107	ddx39b	100	91.533	Scleropages_formosus
ENSMUSG00000019432	Ddx39b	100	96.622	ENSSDUG00000011557	ddx39b	100	93.287	Seriola_dumerili
ENSMUSG00000019432	Ddx39b	100	95.946	ENSSLDG00000015763	ddx39b	100	93.056	Seriola_lalandi_dorsalis
ENSMUSG00000019432	Ddx39b	100	100.000	ENSSARG00000005245	DDX39B	100	87.701	Sorex_araneus
ENSMUSG00000019432	Ddx39b	100	99.324	ENSSPUG00000012805	DDX39B	100	97.664	Sphenodon_punctatus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSSSCG00000001400	DDX39B	100	100.000	Sus_scrofa
ENSMUSG00000019432	Ddx39b	100	76.402	ENSTBEG00000003721	DDX39B	100	76.402	Tupaia_belangeri
ENSMUSG00000019432	Ddx39b	100	90.993	ENSTTRG00000014074	DDX39B	100	90.993	Tursiops_truncatus
ENSMUSG00000019432	Ddx39b	100	86.512	ENSUAMG00000027335	DDX39B	100	86.512	Ursus_americanus
ENSMUSG00000019432	Ddx39b	100	100.000	ENSUMAG00000015124	DDX39B	100	90.421	Ursus_maritimus
ENSMUSG00000019432	Ddx39b	61	98.230	ENSVPAG00000009167	-	74	98.230	Vicugna_pacos
ENSMUSG00000019432	Ddx39b	100	100.000	ENSVVUG00000019518	DDX39B	99	99.299	Vulpes_vulpes
ENSMUSG00000019432	Ddx39b	100	83.953	ENSXETG00000002498	ddx39b	99	83.953	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000245	spliceosomal complex assembly	-	ISO	Process
GO:0000346	transcription export complex	-	ISO	Component
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005687	U4 snRNP	-	ISO	Component
GO:0005688	U6 snRNP	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008186	RNA-dependent ATPase activity	-	ISO	Function
GO:0008380	RNA splicing	-	ISO	Process
GO:0010501	RNA secondary structure unwinding	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016607	nuclear speck	25145264.	IDA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0017070	U6 snRNA binding	-	ISO	Function
GO:0030621	U4 snRNA binding	-	ISO	Function
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0043008	ATP-dependent protein binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0046784	viral mRNA export from host cell nucleus	-	ISO	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0061051	positive regulation of cell growth involved in cardiac muscle cell development	-	ISO	Process
GO:1904707	positive regulation of vascular smooth muscle cell proliferation	-	ISO	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISO	Process
GO:2000573	positive regulation of DNA biosynthetic process	-	ISO	Process