EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000019470 (Gene tree)
Gene ID: 67439
Gene Symbol: Xab2
Alias: 0610041O14Rik
Full Name: XPA binding protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12896
Position: chr8: 3608421-3621316
Accession: 1914689
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000159235	-	911	-	ENSMUSP00000124237	90 (aa)	-	E0CYF8
ENSMUST00000163038	-	4409	-	-	- (aa)	-	-
ENSMUST00000159548	-	854	-	ENSMUSP00000124202	285 (aa)	-	F6TM12
ENSMUST00000019614	-	2677	XM_006508864	ENSMUSP00000019614	855 (aa)	XP_006508927	Q9DCD2
ENSMUST00000159909	-	2916	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000019470's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000019470's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019470	Xab2	100	98.830	ENSG00000076924	XAB2	100	98.830	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000349	generation of catalytic spliceosome for first transesterification step	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000974	Prp19 complex	21873635.	IBA	Component
GO:0001824	blastocyst development	15725628.	IMP	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006283	transcription-coupled nucleotide-excision repair	-	ISO	Process
GO:0006351	transcription, DNA-templated	-	ISO	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071007	U2-type catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component