EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000019659 (Gene tree)
Gene ID: 72654
Gene Symbol: Ccdc12
Alias: 2700094L05Rik
Full Name: coiled-coil domain containing 12
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 55104 bases
Position: chr9:110656503-110711606
Accession: 1919904
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000019803	cwf18	PF08315.12	7.3e-38	1	1
ENSMUSP00000142985	cwf18	PF08315.12	9.4e-36	1	1
ENSMUSP00000143208	cwf18	PF08315.12	2.8e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000019803	-	834	-	ENSMUSP00000019803	166 (aa)	-	Q8R344
ENSMUST00000195979	-	592	-	-	- (aa)	-	-
ENSMUST00000196542	-	497	-	-	- (aa)	-	-
ENSMUST00000198077	-	1150	-	-	- (aa)	-	-
ENSMUST00000199611	-	435	-	-	- (aa)	-	-
ENSMUST00000200550	-	571	-	-	- (aa)	-	-
ENSMUST00000200296	-	599	-	ENSMUSP00000143208	88 (aa)	-	A0A0G2JFK6
ENSMUST00000196347	-	451	-	ENSMUSP00000142985	142 (aa)	-	A0A0G2JF16
ENSMUST00000196092	-	478	-	-	- (aa)	-	-
ENSMUST00000199687	-	477	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000019659's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000019659's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019659	Ccdc12	100	90.361	ENSG00000160799	CCDC12	100	90.361	Homo_sapiens
ENSMUSG00000019659	Ccdc12	96	70.370	ENSAPOG00000014426	ccdc12	59	70.370	Acanthochromis_polyacanthus
ENSMUSG00000019659	Ccdc12	100	93.976	ENSAMEG00000012658	CCDC12	100	93.976	Ailuropoda_melanoleuca
ENSMUSG00000019659	Ccdc12	66	91.379	ENSACIG00000022676	-	81	78.070	Amphilophus_citrinellus
ENSMUSG00000019659	Ccdc12	66	91.379	ENSACIG00000015192	ccdc12	80	77.876	Amphilophus_citrinellus
ENSMUSG00000019659	Ccdc12	96	71.779	ENSAOCG00000024127	ccdc12	95	71.779	Amphiprion_ocellaris
ENSMUSG00000019659	Ccdc12	96	71.341	ENSAPEG00000009155	ccdc12	84	71.341	Amphiprion_percula
ENSMUSG00000019659	Ccdc12	66	91.379	ENSATEG00000004807	ccdc12	100	68.889	Anabas_testudineus
ENSMUSG00000019659	Ccdc12	66	91.379	ENSAPLG00000005482	CCDC12	99	69.853	Anas_platyrhynchos
ENSMUSG00000019659	Ccdc12	100	73.099	ENSACAG00000004727	CCDC12	86	73.099	Anolis_carolinensis
ENSMUSG00000019659	Ccdc12	81	91.791	ENSANAG00000024483	CCDC12	100	91.791	Aotus_nancymaae
ENSMUSG00000019659	Ccdc12	96	69.753	ENSACLG00000005356	ccdc12	98	69.753	Astatotilapia_calliptera
ENSMUSG00000019659	Ccdc12	96	56.934	ENSACLG00000012742	-	96	59.873	Astatotilapia_calliptera
ENSMUSG00000019659	Ccdc12	96	70.122	ENSAMXG00000016319	ccdc12	98	70.122	Astyanax_mexicanus
ENSMUSG00000019659	Ccdc12	100	88.690	ENSBTAG00000011311	CCDC12	100	89.286	Bos_taurus
ENSMUSG00000019659	Ccdc12	74	53.846	WBGene00022092	Y69A2AR.21	86	40.000	Caenorhabditis_elegans
ENSMUSG00000019659	Ccdc12	100	90.964	ENSCJAG00000002280	CCDC12	100	90.964	Callithrix_jacchus
ENSMUSG00000019659	Ccdc12	100	93.373	ENSCAFG00000013588	CCDC12	100	93.373	Canis_familiaris
ENSMUSG00000019659	Ccdc12	100	93.373	ENSCAFG00020014024	CCDC12	93	93.373	Canis_lupus_dingo
ENSMUSG00000019659	Ccdc12	100	88.095	ENSCHIG00000014512	CCDC12	100	88.690	Capra_hircus
ENSMUSG00000019659	Ccdc12	100	90.964	ENSTSYG00000032837	CCDC12	100	90.964	Carlito_syrichta
ENSMUSG00000019659	Ccdc12	89	75.641	ENSCAPG00000007935	CCDC12	100	73.134	Cavia_aperea
ENSMUSG00000019659	Ccdc12	100	92.771	ENSCPOG00000032515	CCDC12	100	92.771	Cavia_porcellus
ENSMUSG00000019659	Ccdc12	100	90.964	ENSCCAG00000020126	CCDC12	93	90.964	Cebus_capucinus
ENSMUSG00000019659	Ccdc12	100	75.882	ENSCATG00000033681	CCDC12	92	75.882	Cercocebus_atys
ENSMUSG00000019659	Ccdc12	100	93.373	ENSCLAG00000016013	CCDC12	100	93.373	Chinchilla_lanigera
ENSMUSG00000019659	Ccdc12	100	90.361	ENSCSAG00000016154	CCDC12	93	90.361	Chlorocebus_sabaeus
ENSMUSG00000019659	Ccdc12	99	75.301	ENSCPBG00000015804	CCDC12	79	75.301	Chrysemys_picta_bellii
ENSMUSG00000019659	Ccdc12	96	49.701	ENSCING00000005261	-	96	49.701	Ciona_intestinalis
ENSMUSG00000019659	Ccdc12	100	90.361	ENSCANG00000020857	CCDC12	93	90.361	Colobus_angolensis_palliatus
ENSMUSG00000019659	Ccdc12	100	96.988	ENSCGRG00001000459	Ccdc12	100	96.988	Cricetulus_griseus_chok1gshd
ENSMUSG00000019659	Ccdc12	100	96.988	ENSCGRG00000012816	Ccdc12	100	96.988	Cricetulus_griseus_crigri
ENSMUSG00000019659	Ccdc12	96	68.519	ENSCSEG00000004543	ccdc12	98	68.519	Cynoglossus_semilaevis
ENSMUSG00000019659	Ccdc12	66	91.379	ENSCVAG00000011342	ccdc12	100	70.803	Cyprinodon_variegatus
ENSMUSG00000019659	Ccdc12	96	68.125	ENSDARG00000023003	ccdc12	98	68.125	Danio_rerio
ENSMUSG00000019659	Ccdc12	58	67.073	ENSDNOG00000048173	-	86	87.654	Dasypus_novemcinctus
ENSMUSG00000019659	Ccdc12	100	93.976	ENSDORG00000016567	-	100	93.976	Dipodomys_ordii
ENSMUSG00000019659	Ccdc12	100	81.928	ENSDORG00000024399	-	100	81.928	Dipodomys_ordii
ENSMUSG00000019659	Ccdc12	96	46.324	FBgn0039732	CG15525	89	43.871	Drosophila_melanogaster
ENSMUSG00000019659	Ccdc12	68	90.265	ENSETEG00000000030	CCDC12	100	90.265	Echinops_telfairi
ENSMUSG00000019659	Ccdc12	96	62.264	ENSEBUG00000005674	ccdc12	98	62.264	Eptatretus_burgeri
ENSMUSG00000019659	Ccdc12	100	93.373	ENSEASG00005008148	-	69	93.373	Equus_asinus_asinus
ENSMUSG00000019659	Ccdc12	100	87.952	ENSECAG00000008649	CCDC12	100	87.952	Equus_caballus
ENSMUSG00000019659	Ccdc12	96	68.519	ENSELUG00000024105	ccdc12	98	68.712	Esox_lucius
ENSMUSG00000019659	Ccdc12	100	93.976	ENSFCAG00000015474	CCDC12	100	93.976	Felis_catus
ENSMUSG00000019659	Ccdc12	70	87.097	ENSFALG00000001895	CCDC12	98	62.893	Ficedula_albicollis
ENSMUSG00000019659	Ccdc12	100	94.578	ENSFDAG00000002549	CCDC12	100	94.578	Fukomys_damarensis
ENSMUSG00000019659	Ccdc12	96	70.732	ENSFHEG00000016247	ccdc12	91	70.732	Fundulus_heteroclitus
ENSMUSG00000019659	Ccdc12	66	93.103	ENSGMOG00000016901	ccdc12	98	60.248	Gadus_morhua
ENSMUSG00000019659	Ccdc12	96	65.441	ENSGAFG00000006762	ccdc12	98	69.325	Gambusia_affinis
ENSMUSG00000019659	Ccdc12	86	78.947	ENSGACG00000008629	ccdc12	98	66.460	Gasterosteus_aculeatus
ENSMUSG00000019659	Ccdc12	99	76.506	ENSGAGG00000019688	CCDC12	98	76.506	Gopherus_agassizii
ENSMUSG00000019659	Ccdc12	100	90.361	ENSGGOG00000009012	CCDC12	93	90.361	Gorilla_gorilla
ENSMUSG00000019659	Ccdc12	96	70.370	ENSHBUG00000016447	ccdc12	98	70.370	Haplochromis_burtoni
ENSMUSG00000019659	Ccdc12	100	93.373	ENSHGLG00000014058	CCDC12	100	93.373	Heterocephalus_glaber_female
ENSMUSG00000019659	Ccdc12	100	93.373	ENSHGLG00100005918	CCDC12	100	93.373	Heterocephalus_glaber_male
ENSMUSG00000019659	Ccdc12	96	65.244	ENSHCOG00000015164	ccdc12	98	65.244	Hippocampus_comes
ENSMUSG00000019659	Ccdc12	96	67.901	ENSIPUG00000001310	Ccdc12	98	67.901	Ictalurus_punctatus
ENSMUSG00000019659	Ccdc12	100	93.976	ENSSTOG00000003085	CCDC12	100	93.976	Ictidomys_tridecemlineatus
ENSMUSG00000019659	Ccdc12	100	92.771	ENSJJAG00000014918	Ccdc12	100	92.771	Jaculus_jaculus
ENSMUSG00000019659	Ccdc12	96	67.485	ENSKMAG00000013891	ccdc12	98	67.485	Kryptolebias_marmoratus
ENSMUSG00000019659	Ccdc12	96	69.375	ENSLBEG00000024714	ccdc12	85	69.375	Labrus_bergylta
ENSMUSG00000019659	Ccdc12	96	73.750	ENSLOCG00000005683	ccdc12	89	73.750	Lepisosteus_oculatus
ENSMUSG00000019659	Ccdc12	97	86.335	ENSLAFG00000027745	-	99	86.335	Loxodonta_africana
ENSMUSG00000019659	Ccdc12	95	76.190	ENSLAFG00000022573	-	98	94.643	Loxodonta_africana
ENSMUSG00000019659	Ccdc12	100	90.361	ENSMFAG00000002976	CCDC12	93	90.361	Macaca_fascicularis
ENSMUSG00000019659	Ccdc12	100	90.361	ENSMMUG00000019810	CCDC12	93	90.361	Macaca_mulatta
ENSMUSG00000019659	Ccdc12	100	90.361	ENSMNEG00000035785	CCDC12	93	90.361	Macaca_nemestrina
ENSMUSG00000019659	Ccdc12	100	90.361	ENSMLEG00000038060	CCDC12	93	90.361	Mandrillus_leucophaeus
ENSMUSG00000019659	Ccdc12	96	66.176	ENSMAMG00000012165	ccdc12	98	70.122	Mastacembelus_armatus
ENSMUSG00000019659	Ccdc12	96	70.370	ENSMZEG00005014728	ccdc12	98	70.370	Maylandia_zebra
ENSMUSG00000019659	Ccdc12	93	60.510	ENSMZEG00005019013	-	96	60.510	Maylandia_zebra
ENSMUSG00000019659	Ccdc12	66	87.931	ENSMGAG00000002815	CCDC12	99	63.636	Meleagris_gallopavo
ENSMUSG00000019659	Ccdc12	100	96.988	ENSMAUG00000008879	Ccdc12	100	96.988	Mesocricetus_auratus
ENSMUSG00000019659	Ccdc12	100	92.814	ENSMICG00000032886	CCDC12	100	92.814	Microcebus_murinus
ENSMUSG00000019659	Ccdc12	100	96.988	ENSMOCG00000004483	Ccdc12	100	96.988	Microtus_ochrogaster
ENSMUSG00000019659	Ccdc12	66	91.379	ENSMMOG00000001860	ccdc12	75	74.545	Mola_mola
ENSMUSG00000019659	Ccdc12	100	77.976	ENSMODG00000013967	-	100	77.976	Monodelphis_domestica
ENSMUSG00000019659	Ccdc12	100	64.671	ENSMODG00000025021	-	100	64.671	Monodelphis_domestica
ENSMUSG00000019659	Ccdc12	100	64.671	ENSMODG00000022615	-	100	64.671	Monodelphis_domestica
ENSMUSG00000019659	Ccdc12	96	69.512	ENSMALG00000011850	ccdc12	98	69.512	Monopterus_albus
ENSMUSG00000019659	Ccdc12	100	98.795	MGP_CAROLIEiJ_G0032737	-	100	98.795	Mus_caroli
ENSMUSG00000019659	Ccdc12	100	98.795	MGP_PahariEiJ_G0015604	Ccdc12	100	98.795	Mus_pahari
ENSMUSG00000019659	Ccdc12	100	99.398	MGP_SPRETEiJ_G0033885	Ccdc12	100	100.000	Mus_spretus
ENSMUSG00000019659	Ccdc12	100	88.554	ENSMLUG00000009547	CCDC12	100	88.554	Myotis_lucifugus
ENSMUSG00000019659	Ccdc12	100	93.373	ENSNGAG00000004149	Ccdc12	100	93.373	Nannospalax_galili
ENSMUSG00000019659	Ccdc12	96	66.250	ENSNBRG00000015275	ccdc12	98	66.250	Neolamprologus_brichardi
ENSMUSG00000019659	Ccdc12	100	88.554	ENSNLEG00000006219	CCDC12	100	88.554	Nomascus_leucogenys
ENSMUSG00000019659	Ccdc12	99	84.756	ENSOPRG00000005086	CCDC12	99	85.366	Ochotona_princeps
ENSMUSG00000019659	Ccdc12	100	93.373	ENSODEG00000012202	CCDC12	100	93.373	Octodon_degus
ENSMUSG00000019659	Ccdc12	96	70.370	ENSONIG00000003061	ccdc12	98	70.370	Oreochromis_niloticus
ENSMUSG00000019659	Ccdc12	66	93.103	ENSOANG00000004263	-	100	71.642	Ornithorhynchus_anatinus
ENSMUSG00000019659	Ccdc12	100	92.771	ENSOCUG00000012431	CCDC12	85	92.771	Oryctolagus_cuniculus
ENSMUSG00000019659	Ccdc12	96	67.485	ENSORLG00000008126	ccdc12	98	67.485	Oryzias_latipes
ENSMUSG00000019659	Ccdc12	96	68.944	ENSORLG00020013927	ccdc12	98	68.944	Oryzias_latipes_hni
ENSMUSG00000019659	Ccdc12	96	68.944	ENSORLG00015020115	ccdc12	98	68.944	Oryzias_latipes_hsok
ENSMUSG00000019659	Ccdc12	96	68.944	ENSOMEG00000014082	ccdc12	98	68.944	Oryzias_melastigma
ENSMUSG00000019659	Ccdc12	96	68.944	ENSOMEG00000022304	ccdc12	98	68.944	Oryzias_melastigma
ENSMUSG00000019659	Ccdc12	95	75.000	ENSOGAG00000016807	CCDC12	100	95.536	Otolemur_garnettii
ENSMUSG00000019659	Ccdc12	81	86.861	ENSOARG00000006426	CCDC12	100	87.591	Ovis_aries
ENSMUSG00000019659	Ccdc12	100	89.759	ENSPPAG00000028782	CCDC12	93	89.759	Pan_paniscus
ENSMUSG00000019659	Ccdc12	100	93.976	ENSPPRG00000013547	CCDC12	100	93.976	Panthera_pardus
ENSMUSG00000019659	Ccdc12	100	93.976	ENSPTIG00000014875	CCDC12	95	93.976	Panthera_tigris_altaica
ENSMUSG00000019659	Ccdc12	100	90.361	ENSPTRG00000014862	CCDC12	93	90.361	Pan_troglodytes
ENSMUSG00000019659	Ccdc12	100	90.361	ENSPANG00000017485	CCDC12	95	90.361	Papio_anubis
ENSMUSG00000019659	Ccdc12	96	69.565	ENSPKIG00000019130	ccdc12	98	70.807	Paramormyrops_kingsleyae
ENSMUSG00000019659	Ccdc12	66	93.103	ENSPSIG00000010867	CCDC12	100	81.250	Pelodiscus_sinensis
ENSMUSG00000019659	Ccdc12	96	68.902	ENSPMGG00000012211	ccdc12	98	68.902	Periophthalmus_magnuspinnatus
ENSMUSG00000019659	Ccdc12	100	98.193	ENSPEMG00000022196	-	100	98.193	Peromyscus_maniculatus_bairdii
ENSMUSG00000019659	Ccdc12	100	77.844	ENSPEMG00000001376	-	100	77.844	Peromyscus_maniculatus_bairdii
ENSMUSG00000019659	Ccdc12	94	66.242	ENSPMAG00000000005	ccdc12	99	65.089	Petromyzon_marinus
ENSMUSG00000019659	Ccdc12	100	78.313	ENSPCIG00000025941	CCDC12	100	78.313	Phascolarctos_cinereus
ENSMUSG00000019659	Ccdc12	96	65.441	ENSPFOG00000000343	ccdc12	98	70.122	Poecilia_formosa
ENSMUSG00000019659	Ccdc12	96	69.325	ENSPLAG00000019010	ccdc12	98	69.325	Poecilia_latipinna
ENSMUSG00000019659	Ccdc12	96	65.441	ENSPMEG00000022371	ccdc12	79	70.122	Poecilia_mexicana
ENSMUSG00000019659	Ccdc12	96	70.122	ENSPREG00000020932	ccdc12	79	70.122	Poecilia_reticulata
ENSMUSG00000019659	Ccdc12	100	90.361	ENSPPYG00000013924	CCDC12	82	90.361	Pongo_abelii
ENSMUSG00000019659	Ccdc12	100	92.814	ENSPCAG00000005800	CCDC12	100	92.814	Procavia_capensis
ENSMUSG00000019659	Ccdc12	100	92.216	ENSPCOG00000018682	CCDC12	93	92.216	Propithecus_coquereli
ENSMUSG00000019659	Ccdc12	100	92.169	ENSPVAG00000004204	CCDC12	100	92.169	Pteropus_vampyrus
ENSMUSG00000019659	Ccdc12	96	70.370	ENSPNYG00000016295	ccdc12	98	70.370	Pundamilia_nyererei
ENSMUSG00000019659	Ccdc12	67	91.525	ENSPNAG00000028558	ccdc12	93	76.724	Pygocentrus_nattereri
ENSMUSG00000019659	Ccdc12	100	98.795	ENSRNOG00000020946	Ccdc12	100	98.795	Rattus_norvegicus
ENSMUSG00000019659	Ccdc12	100	90.361	ENSRBIG00000039910	CCDC12	93	90.361	Rhinopithecus_bieti
ENSMUSG00000019659	Ccdc12	100	90.361	ENSRROG00000039721	CCDC12	100	90.361	Rhinopithecus_roxellana
ENSMUSG00000019659	Ccdc12	100	90.964	ENSSBOG00000035443	CCDC12	93	90.964	Saimiri_boliviensis_boliviensis
ENSMUSG00000019659	Ccdc12	100	74.648	ENSSHAG00000003265	-	95	81.935	Sarcophilus_harrisii
ENSMUSG00000019659	Ccdc12	97	68.098	ENSSFOG00015001307	ccdc12	99	68.098	Scleropages_formosus
ENSMUSG00000019659	Ccdc12	96	70.732	ENSSMAG00000019856	ccdc12	98	70.732	Scophthalmus_maximus
ENSMUSG00000019659	Ccdc12	94	68.987	ENSSDUG00000006549	ccdc12	96	70.000	Seriola_dumerili
ENSMUSG00000019659	Ccdc12	96	69.136	ENSSLDG00000015956	ccdc12	98	70.122	Seriola_lalandi_dorsalis
ENSMUSG00000019659	Ccdc12	58	96.875	ENSSARG00000004686	-	58	96.875	Sorex_araneus
ENSMUSG00000019659	Ccdc12	86	60.656	ENSSPUG00000013054	CCDC12	91	49.324	Sphenodon_punctatus
ENSMUSG00000019659	Ccdc12	96	69.136	ENSSPAG00000007010	ccdc12	98	69.136	Stegastes_partitus
ENSMUSG00000019659	Ccdc12	100	48.592	ENSSSCG00000007882	-	97	53.247	Sus_scrofa
ENSMUSG00000019659	Ccdc12	100	93.373	ENSSSCG00000011329	-	100	93.373	Sus_scrofa
ENSMUSG00000019659	Ccdc12	76	57.407	ENSTGUG00000000186	CCDC12	86	67.593	Taeniopygia_guttata
ENSMUSG00000019659	Ccdc12	96	66.038	ENSTRUG00000014023	ccdc12	83	66.038	Takifugu_rubripes
ENSMUSG00000019659	Ccdc12	96	69.182	ENSTNIG00000018407	ccdc12	96	69.182	Tetraodon_nigroviridis
ENSMUSG00000019659	Ccdc12	100	68.862	ENSTBEG00000000048	CCDC12	100	68.862	Tupaia_belangeri
ENSMUSG00000019659	Ccdc12	100	82.143	ENSTTRG00000015854	CCDC12	100	83.333	Tursiops_truncatus
ENSMUSG00000019659	Ccdc12	100	86.145	ENSUAMG00000025548	CCDC12	97	92.857	Ursus_americanus
ENSMUSG00000019659	Ccdc12	100	93.373	ENSUMAG00000004346	CCDC12	100	93.373	Ursus_maritimus
ENSMUSG00000019659	Ccdc12	80	74.561	ENSVPAG00000000070	-	100	75.221	Vicugna_pacos
ENSMUSG00000019659	Ccdc12	100	93.373	ENSVVUG00000004582	CCDC12	100	93.373	Vulpes_vulpes
ENSMUSG00000019659	Ccdc12	66	98.276	ENSXETG00000013123	ccdc12	98	75.940	Xenopus_tropicalis
ENSMUSG00000019659	Ccdc12	96	69.325	ENSXCOG00000019741	ccdc12	98	69.325	Xiphophorus_couchianus
ENSMUSG00000019659	Ccdc12	96	69.325	ENSXMAG00000014098	ccdc12	79	69.325	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process