EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000019802 (Gene tree)
Gene ID: 140740
Gene Symbol: Sec63
Alias: 5730478J10Rik
Full Name: SEC63-like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 71019
Position: chr10: 42761496-42832514
Accession: 2155302
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000144228	-	4137	-	-	- (aa)	-	-
ENSMUST00000155410	-	5206	-	-	- (aa)	-	-
ENSMUST00000019937	-	6032	XM_011243116	ENSMUSP00000019937	760 (aa)	-	Q8VHE0
ENSMUST00000105496	-	752	-	-	- (aa)	-	-
ENSMUST00000124613	-	699	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000019802's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03060	Protein export	KEGG
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000019802's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019802	Sec63	99	44.314	FBgn0035771	Sec63	96	44.966	Drosophila_melanogaster
ENSMUSG00000019802	Sec63	100	96.316	ENSG00000025796	SEC63	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001889	liver development	21685914.	IGI	Process
GO:0001889	liver development	21685914.	IMP	Process
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	21873635.	IBA	Process
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	22375059.	IMP	Process
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	22375059.	ISO	Process
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	21873635.	IBA	Process
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	22375059.	IMP	Process
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	22375059.	ISO	Process
GO:0006807	nitrogen compound metabolic process	21685914.	IGI	Process
GO:0008565	protein transporter activity	21873635.	IBA	Function
GO:0010259	multicellular organism aging	21685914.	IMP	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	22375059.	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0031204	posttranslational protein targeting to membrane, translocation	-	ISO	Process
GO:0031207	Sec62/Sec63 complex	21873635.	IBA	Component