EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000019897 (Gene tree)
Gene ID: 52713
Gene Symbol: Ccdc59
Alias: 2300004H16Rik|D10Ertd718e
Full Name: coiled-coil domain containing 59
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 6767 bases
Position: chr10:105841067-105847833
Accession: 1289302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020049	rRNA_processing	PF08524.11	1.9e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000155406	-	511	-	-	- (aa)	-	-
ENSMUST00000133538	-	4314	-	-	- (aa)	-	-
ENSMUST00000020049	-	1813	-	ENSMUSP00000020049	240 (aa)	-	Q8R2N0

Gene Model

Click here to download ENSMUSG00000019897's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000019897's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000019897	Ccdc59	100	69.835	ENSG00000133773	CCDC59	100	69.835	Homo_sapiens
ENSMUSG00000019897	Ccdc59	99	39.453	ENSAPOG00000013793	-	98	39.453	Acanthochromis_polyacanthus
ENSMUSG00000019897	Ccdc59	93	68.444	ENSAMEG00000016875	CCDC59	99	68.444	Ailuropoda_melanoleuca
ENSMUSG00000019897	Ccdc59	99	39.850	ENSACIG00000004060	ccdc59	98	39.852	Amphilophus_citrinellus
ENSMUSG00000019897	Ccdc59	99	39.608	ENSAOCG00000001895	ccdc59	98	39.608	Amphiprion_ocellaris
ENSMUSG00000019897	Ccdc59	99	39.608	ENSAPEG00000006365	ccdc59	98	39.608	Amphiprion_percula
ENSMUSG00000019897	Ccdc59	85	45.923	ENSATEG00000017992	ccdc59	98	41.729	Anabas_testudineus
ENSMUSG00000019897	Ccdc59	80	58.763	ENSAPLG00000007839	CCDC59	100	58.763	Anas_platyrhynchos
ENSMUSG00000019897	Ccdc59	78	48.780	ENSACAG00000014707	CCDC59	99	48.780	Anolis_carolinensis
ENSMUSG00000019897	Ccdc59	100	71.488	ENSANAG00000033505	CCDC59	100	71.488	Aotus_nancymaae
ENSMUSG00000019897	Ccdc59	99	40.625	ENSACLG00000023759	ccdc59	98	41.538	Astatotilapia_calliptera
ENSMUSG00000019897	Ccdc59	85	41.818	ENSAMXG00000036253	ccdc59	86	44.643	Astyanax_mexicanus
ENSMUSG00000019897	Ccdc59	100	68.182	ENSBTAG00000036282	CCDC59	100	70.248	Bos_taurus
ENSMUSG00000019897	Ccdc59	100	69.008	ENSCJAG00000019396	CCDC59	100	69.008	Callithrix_jacchus
ENSMUSG00000019897	Ccdc59	100	66.116	ENSCAFG00000023758	CCDC59	100	66.116	Canis_familiaris
ENSMUSG00000019897	Ccdc59	99	69.167	ENSCHIG00000025817	-	99	71.250	Capra_hircus
ENSMUSG00000019897	Ccdc59	99	68.333	ENSCHIG00000004977	-	99	70.417	Capra_hircus
ENSMUSG00000019897	Ccdc59	99	67.647	ENSTSYG00000007979	CCDC59	98	67.647	Carlito_syrichta
ENSMUSG00000019897	Ccdc59	100	70.539	ENSCPOG00000036718	CCDC59	100	70.539	Cavia_porcellus
ENSMUSG00000019897	Ccdc59	100	69.421	ENSCCAG00000021997	CCDC59	100	69.421	Cebus_capucinus
ENSMUSG00000019897	Ccdc59	100	69.835	ENSCATG00000044760	CCDC59	100	69.835	Cercocebus_atys
ENSMUSG00000019897	Ccdc59	100	71.074	ENSCLAG00000015050	CCDC59	100	71.074	Chinchilla_lanigera
ENSMUSG00000019897	Ccdc59	100	69.835	ENSCSAG00000003867	CCDC59	100	69.835	Chlorocebus_sabaeus
ENSMUSG00000019897	Ccdc59	99	67.917	ENSCHOG00000007788	CCDC59	99	67.917	Choloepus_hoffmanni
ENSMUSG00000019897	Ccdc59	86	54.854	ENSCPBG00000000075	CCDC59	87	54.854	Chrysemys_picta_bellii
ENSMUSG00000019897	Ccdc59	100	69.835	ENSCANG00000032140	CCDC59	100	69.835	Colobus_angolensis_palliatus
ENSMUSG00000019897	Ccdc59	100	80.417	ENSCGRG00001015959	Ccdc59	100	80.417	Cricetulus_griseus_chok1gshd
ENSMUSG00000019897	Ccdc59	100	80.417	ENSCGRG00000014122	Ccdc59	100	80.417	Cricetulus_griseus_crigri
ENSMUSG00000019897	Ccdc59	98	38.996	ENSCSEG00000008298	ccdc59	99	39.768	Cynoglossus_semilaevis
ENSMUSG00000019897	Ccdc59	84	43.192	ENSCVAG00000009807	ccdc59	87	42.342	Cyprinodon_variegatus
ENSMUSG00000019897	Ccdc59	87	42.544	ENSDARG00000045755	ccdc59	88	43.860	Danio_rerio
ENSMUSG00000019897	Ccdc59	99	65.272	ENSETEG00000000256	CCDC59	99	65.272	Echinops_telfairi
ENSMUSG00000019897	Ccdc59	99	71.084	ENSEASG00005021237	CCDC59	99	71.084	Equus_asinus_asinus
ENSMUSG00000019897	Ccdc59	99	70.683	ENSECAG00000010450	CCDC59	99	70.683	Equus_caballus
ENSMUSG00000019897	Ccdc59	56	75.000	ENSEEUG00000004885	-	55	75.000	Erinaceus_europaeus
ENSMUSG00000019897	Ccdc59	87	41.991	ENSELUG00000001779	ccdc59	86	41.991	Esox_lucius
ENSMUSG00000019897	Ccdc59	99	71.250	ENSFCAG00000028462	CCDC59	99	71.250	Felis_catus
ENSMUSG00000019897	Ccdc59	98	51.867	ENSFALG00000010525	CCDC59	98	51.867	Ficedula_albicollis
ENSMUSG00000019897	Ccdc59	100	71.074	ENSFDAG00000018726	CCDC59	100	71.074	Fukomys_damarensis
ENSMUSG00000019897	Ccdc59	84	44.444	ENSFHEG00000021511	ccdc59	88	43.668	Fundulus_heteroclitus
ENSMUSG00000019897	Ccdc59	85	40.000	ENSGMOG00000018721	ccdc59	98	40.000	Gadus_morhua
ENSMUSG00000019897	Ccdc59	87	53.110	ENSGALG00000028648	CCDC59	88	53.110	Gallus_gallus
ENSMUSG00000019897	Ccdc59	86	42.273	ENSGAFG00000008786	ccdc59	86	42.273	Gambusia_affinis
ENSMUSG00000019897	Ccdc59	86	39.462	ENSGACG00000019765	ccdc59	87	39.462	Gasterosteus_aculeatus
ENSMUSG00000019897	Ccdc59	86	54.854	ENSGAGG00000017055	CCDC59	87	54.854	Gopherus_agassizii
ENSMUSG00000019897	Ccdc59	100	71.074	ENSGGOG00000025296	CCDC59	100	71.074	Gorilla_gorilla
ENSMUSG00000019897	Ccdc59	99	40.684	ENSHBUG00000018713	ccdc59	98	40.684	Haplochromis_burtoni
ENSMUSG00000019897	Ccdc59	100	72.727	ENSHGLG00000001711	CCDC59	100	72.727	Heterocephalus_glaber_female
ENSMUSG00000019897	Ccdc59	100	73.140	ENSHGLG00100000248	CCDC59	100	73.140	Heterocephalus_glaber_male
ENSMUSG00000019897	Ccdc59	82	47.619	ENSHCOG00000004915	ccdc59	98	43.307	Hippocampus_comes
ENSMUSG00000019897	Ccdc59	86	42.667	ENSIPUG00000017904	ccdc59	86	42.667	Ictalurus_punctatus
ENSMUSG00000019897	Ccdc59	100	74.274	ENSSTOG00000009858	CCDC59	100	74.274	Ictidomys_tridecemlineatus
ENSMUSG00000019897	Ccdc59	99	68.487	ENSJJAG00000015263	Ccdc59	99	68.487	Jaculus_jaculus
ENSMUSG00000019897	Ccdc59	85	40.426	ENSKMAG00000016345	ccdc59	87	41.702	Kryptolebias_marmoratus
ENSMUSG00000019897	Ccdc59	92	44.583	ENSLBEG00000018654	ccdc59	87	44.583	Labrus_bergylta
ENSMUSG00000019897	Ccdc59	86	52.915	ENSLACG00000016632	CCDC59	84	52.915	Latimeria_chalumnae
ENSMUSG00000019897	Ccdc59	86	53.774	ENSLOCG00000016324	ccdc59	85	53.774	Lepisosteus_oculatus
ENSMUSG00000019897	Ccdc59	99	67.647	ENSLAFG00000015368	CCDC59	99	67.647	Loxodonta_africana
ENSMUSG00000019897	Ccdc59	100	69.421	ENSMFAG00000034303	CCDC59	100	69.421	Macaca_fascicularis
ENSMUSG00000019897	Ccdc59	100	69.835	ENSMNEG00000037462	CCDC59	100	69.835	Macaca_nemestrina
ENSMUSG00000019897	Ccdc59	100	69.421	ENSMLEG00000039811	CCDC59	100	69.421	Mandrillus_leucophaeus
ENSMUSG00000019897	Ccdc59	99	41.729	ENSMAMG00000011380	ccdc59	96	42.481	Mastacembelus_armatus
ENSMUSG00000019897	Ccdc59	99	40.449	ENSMZEG00005005994	ccdc59	98	40.449	Maylandia_zebra
ENSMUSG00000019897	Ccdc59	80	55.959	ENSMGAG00000011116	CCDC59	100	55.959	Meleagris_gallopavo
ENSMUSG00000019897	Ccdc59	100	79.167	ENSMAUG00000017516	Ccdc59	99	79.167	Mesocricetus_auratus
ENSMUSG00000019897	Ccdc59	99	72.500	ENSMICG00000041747	CCDC59	99	72.500	Microcebus_murinus
ENSMUSG00000019897	Ccdc59	100	77.778	ENSMOCG00000006690	Ccdc59	100	77.778	Microtus_ochrogaster
ENSMUSG00000019897	Ccdc59	99	36.327	ENSMMOG00000001931	ccdc59	98	36.327	Mola_mola
ENSMUSG00000019897	Ccdc59	88	44.541	ENSMALG00000013053	ccdc59	87	44.541	Monopterus_albus
ENSMUSG00000019897	Ccdc59	100	93.750	MGP_CAROLIEiJ_G0015781	Ccdc59	100	93.750	Mus_caroli
ENSMUSG00000019897	Ccdc59	100	89.167	MGP_PahariEiJ_G0031306	Ccdc59	100	89.167	Mus_pahari
ENSMUSG00000019897	Ccdc59	100	97.083	MGP_SPRETEiJ_G0016603	Ccdc59	100	97.083	Mus_spretus
ENSMUSG00000019897	Ccdc59	99	61.925	ENSMPUG00000011361	CCDC59	99	61.925	Mustela_putorius_furo
ENSMUSG00000019897	Ccdc59	100	73.663	ENSMLUG00000008071	CCDC59	100	73.663	Myotis_lucifugus
ENSMUSG00000019897	Ccdc59	100	73.333	ENSNGAG00000023637	Ccdc59	100	73.333	Nannospalax_galili
ENSMUSG00000019897	Ccdc59	100	70.248	ENSNLEG00000033968	CCDC59	100	70.248	Nomascus_leucogenys
ENSMUSG00000019897	Ccdc59	85	49.268	ENSMEUG00000000635	-	99	46.025	Notamacropus_eugenii
ENSMUSG00000019897	Ccdc59	99	41.825	ENSONIG00000011545	ccdc59	98	41.825	Oreochromis_niloticus
ENSMUSG00000019897	Ccdc59	100	70.248	ENSOCUG00000017824	CCDC59	100	70.248	Oryctolagus_cuniculus
ENSMUSG00000019897	Ccdc59	85	46.364	ENSORLG00000027963	ccdc59	86	46.364	Oryzias_latipes
ENSMUSG00000019897	Ccdc59	85	46.977	ENSORLG00020014686	ccdc59	86	46.977	Oryzias_latipes_hni
ENSMUSG00000019897	Ccdc59	85	46.047	ENSORLG00015013061	ccdc59	86	46.977	Oryzias_latipes_hsok
ENSMUSG00000019897	Ccdc59	85	45.498	ENSOMEG00000007247	ccdc59	86	45.498	Oryzias_melastigma
ENSMUSG00000019897	Ccdc59	99	69.748	ENSOGAG00000004383	CCDC59	99	69.748	Otolemur_garnettii
ENSMUSG00000019897	Ccdc59	99	69.959	ENSOARG00000015247	CCDC59	99	72.016	Ovis_aries
ENSMUSG00000019897	Ccdc59	100	61.983	ENSPPAG00000039810	-	100	61.983	Pan_paniscus
ENSMUSG00000019897	Ccdc59	100	70.661	ENSPPAG00000030113	CCDC59	100	70.661	Pan_paniscus
ENSMUSG00000019897	Ccdc59	99	71.250	ENSPPRG00000022500	CCDC59	99	71.250	Panthera_pardus
ENSMUSG00000019897	Ccdc59	99	71.250	ENSPTIG00000020934	CCDC59	99	71.250	Panthera_tigris_altaica
ENSMUSG00000019897	Ccdc59	100	70.661	ENSPTRG00000005266	CCDC59	100	70.661	Pan_troglodytes
ENSMUSG00000019897	Ccdc59	100	62.397	ENSPTRG00000048467	-	100	62.397	Pan_troglodytes
ENSMUSG00000019897	Ccdc59	100	69.008	ENSPANG00000023011	CCDC59	100	69.008	Papio_anubis
ENSMUSG00000019897	Ccdc59	85	47.945	ENSPKIG00000019649	ccdc59	85	47.945	Paramormyrops_kingsleyae
ENSMUSG00000019897	Ccdc59	92	42.308	ENSPMGG00000009816	ccdc59	97	40.316	Periophthalmus_magnuspinnatus
ENSMUSG00000019897	Ccdc59	86	65.049	ENSPCIG00000007808	CCDC59	100	59.336	Phascolarctos_cinereus
ENSMUSG00000019897	Ccdc59	99	39.924	ENSPFOG00000005611	ccdc59	98	39.924	Poecilia_formosa
ENSMUSG00000019897	Ccdc59	99	40.304	ENSPLAG00000003832	ccdc59	98	40.304	Poecilia_latipinna
ENSMUSG00000019897	Ccdc59	99	39.924	ENSPMEG00000007149	ccdc59	98	39.924	Poecilia_mexicana
ENSMUSG00000019897	Ccdc59	99	38.314	ENSPREG00000002686	ccdc59	98	38.314	Poecilia_reticulata
ENSMUSG00000019897	Ccdc59	100	70.124	ENSPPYG00000004804	CCDC59	100	70.124	Pongo_abelii
ENSMUSG00000019897	Ccdc59	78	72.872	ENSPCAG00000000679	CCDC59	100	72.872	Procavia_capensis
ENSMUSG00000019897	Ccdc59	99	70.000	ENSPCOG00000013658	CCDC59	99	70.000	Propithecus_coquereli
ENSMUSG00000019897	Ccdc59	99	41.154	ENSPNYG00000000586	ccdc59	98	40.909	Pundamilia_nyererei
ENSMUSG00000019897	Ccdc59	87	42.609	ENSPNAG00000029087	ccdc59	88	42.609	Pygocentrus_nattereri
ENSMUSG00000019897	Ccdc59	100	87.083	ENSRNOG00000004183	Ccdc59	100	87.083	Rattus_norvegicus
ENSMUSG00000019897	Ccdc59	100	63.636	ENSRBIG00000037638	CCDC59	100	63.636	Rhinopithecus_bieti
ENSMUSG00000019897	Ccdc59	100	69.421	ENSRROG00000041324	CCDC59	100	69.421	Rhinopithecus_roxellana
ENSMUSG00000019897	Ccdc59	100	69.959	ENSSBOG00000029711	CCDC59	100	69.959	Saimiri_boliviensis_boliviensis
ENSMUSG00000019897	Ccdc59	100	60.581	ENSSHAG00000007040	CCDC59	100	60.581	Sarcophilus_harrisii
ENSMUSG00000019897	Ccdc59	99	44.223	ENSSFOG00015008683	ccdc59	99	44.223	Scleropages_formosus
ENSMUSG00000019897	Ccdc59	85	41.810	ENSSMAG00000001292	ccdc59	77	42.672	Scophthalmus_maximus
ENSMUSG00000019897	Ccdc59	99	41.509	ENSSDUG00000003120	ccdc59	98	41.509	Seriola_dumerili
ENSMUSG00000019897	Ccdc59	99	41.538	ENSSLDG00000023499	ccdc59	98	41.538	Seriola_lalandi_dorsalis
ENSMUSG00000019897	Ccdc59	78	53.476	ENSSPUG00000011405	CCDC59	85	53.476	Sphenodon_punctatus
ENSMUSG00000019897	Ccdc59	99	43.580	ENSSPAG00000022368	ccdc59	98	43.580	Stegastes_partitus
ENSMUSG00000019897	Ccdc59	99	72.177	ENSSSCG00000038987	CCDC59	99	72.177	Sus_scrofa
ENSMUSG00000019897	Ccdc59	79	57.812	ENSTGUG00000007835	CCDC59	100	57.812	Taeniopygia_guttata
ENSMUSG00000019897	Ccdc59	85	46.218	ENSTRUG00000015207	ccdc59	87	46.218	Takifugu_rubripes
ENSMUSG00000019897	Ccdc59	85	43.777	ENSTNIG00000011028	ccdc59	87	43.777	Tetraodon_nigroviridis
ENSMUSG00000019897	Ccdc59	99	70.417	ENSTBEG00000008887	CCDC59	99	70.417	Tupaia_belangeri
ENSMUSG00000019897	Ccdc59	99	72.917	ENSTTRG00000000199	CCDC59	99	72.917	Tursiops_truncatus
ENSMUSG00000019897	Ccdc59	99	69.328	ENSUAMG00000009205	CCDC59	99	69.328	Ursus_americanus
ENSMUSG00000019897	Ccdc59	99	72.803	ENSVPAG00000001931	CCDC59	99	72.803	Vicugna_pacos
ENSMUSG00000019897	Ccdc59	100	65.417	ENSVVUG00000010954	CCDC59	100	65.417	Vulpes_vulpes
ENSMUSG00000019897	Ccdc59	86	49.758	ENSXETG00000014539	ccdc59	76	49.758	Xenopus_tropicalis
ENSMUSG00000019897	Ccdc59	86	43.304	ENSXCOG00000013601	ccdc59	86	43.304	Xiphophorus_couchianus
ENSMUSG00000019897	Ccdc59	86	42.396	ENSXMAG00000011199	ccdc59	86	42.396	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component