EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020048 (Gene tree)
Gene ID: 22027
Gene Symbol: Hsp90b1
Alias: 90 kDa|ERp99|GRP94|Targ2|Tra-1|Tra1|endoplasmin|gp96|tumor rejection antigen (gp96) 1
Full Name: heat shock protein 90%2C beta (Grp94)%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 15301
Position: chr10: 86690209-86705509
Accession: 98817
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000134515	-	654	-	-	- (aa)	-	-
ENSMUST00000129413	-	1119	-	ENSMUSP00000122710	373 (aa)	-	F7C312
ENSMUST00000020238	-	2825	-	ENSMUSP00000020238	802 (aa)	-	P08113
ENSMUST00000129178	-	3222	-	-	- (aa)	-	-
ENSMUST00000146897	-	268	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020048's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04141	Protein processing in endoplasmic reticulum	KEGG
mmu04151	PI3K-Akt signaling pathway	KEGG
mmu04657	IL-17 signaling pathway	KEGG
mmu04915	Estrogen signaling pathway	KEGG
mmu04918	Thyroid hormone synthesis	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05215	Prostate cancer	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020048's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020048	Hsp90b1	89	49.398	WBGene00000915	daf-21	95	48.240	Caenorhabditis_elegans
ENSMUSG00000020048	Hsp90b1	89	50.301	FBgn0001233	Hsp83	61	46.606	Drosophila_melanogaster
ENSMUSG00000020048	Hsp90b1	89	31.686	FBgn0026761	Trap1	88	32.244	Drosophila_melanogaster
ENSMUSG00000020048	Hsp90b1	100	95.890	ENSG00000166598	HSP90B1	100	97.917	Homo_sapiens
ENSMUSG00000020048	Hsp90b1	89	49.699	ENSG00000096384	HSP90AB1	95	47.286	Homo_sapiens
ENSMUSG00000020048	Hsp90b1	89	50.301	ENSG00000080824	HSP90AA1	73	71.053	Homo_sapiens
ENSMUSG00000020048	Hsp90b1	93	31.956	ENSG00000126602	TRAP1	100	48.571	Homo_sapiens
ENSMUSG00000020048	Hsp90b1	89	49.699	ENSMUSG00000023944	Hsp90ab1	87	65.152	Mus_musculus
ENSMUSG00000020048	Hsp90b1	88	50.760	ENSMUSG00000021270	Hsp90aa1	92	53.684	Mus_musculus
ENSMUSG00000020048	Hsp90b1	89	32.184	ENSMUSG00000005981	Trap1	90	31.601	Mus_musculus
ENSMUSG00000020048	Hsp90b1	89	49.398	YMR186W	HSC82	95	48.684	Saccharomyces_cerevisiae
ENSMUSG00000020048	Hsp90b1	89	48.795	YPL240C	HSP82	95	47.896	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001666	response to hypoxia	21873635.	IBA	Process
GO:0001666	response to hypoxia	-	ISO	Process
GO:0003723	RNA binding	-	ISO	Function
GO:0005515	protein binding	21873635.	IBA	Function
GO:0005515	protein binding	21093319.23055941.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	10444069.12135983.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005788	endoplasmic reticulum lumen	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005790	smooth endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	15252132.	IDA	Component
GO:0006457	protein folding	-	IEA	Process
GO:0019903	protein phosphatase binding	19000834.	ISO	Function
GO:0030433	ubiquitin-dependent ERAD pathway	-	ISO	Process
GO:0030496	midbody	-	ISO	Component
GO:0030970	retrograde protein transport, ER to cytosol	-	ISO	Process
GO:0031247	actin rod assembly	19000834.	ISO	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0034663	endoplasmic reticulum chaperone complex	12475965.	IDA	Component
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043666	regulation of phosphoprotein phosphatase activity	19000834.	ISO	Process
GO:0048471	perinuclear region of cytoplasm	21873635.	IBA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0050750	low-density lipoprotein particle receptor binding	15082773.	ISO	Function
GO:0051082	unfolded protein binding	-	IEA	Function
GO:0071318	cellular response to ATP	19000834.	ISO	Process