EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000020075 (Gene tree)
Gene ID
56200
Gene Symbol
Ddx21
Alias
D10Ertd645e|D10Wsu42e|RH II/Gu|RH-II/Gualpha
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
22031 bases
Position
chr10:62580251-62602281
Accession
1860494
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000042691GUCTPF08152.121.6e-3011
ENSMUSP00000042691ResIIIPF04851.153.6e-0711
ENSMUSP00000042691DEADPF00270.291.8e-4511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000045866-4722-ENSMUSP00000042691851 (aa)-Q9JIK5
ENSMUST00000220060-558--- (aa)--
ENSMUST00000218393-480--- (aa)--
Gene Model
Click here to download ENSMUSG00000020075's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020075's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000020075Ddx217164.217ENSMUSG00000020076Ddx508266.446
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000020075Ddx219988.490ENSG00000165732DDX2110088.490Homo_sapiens
ENSMUSG00000020075Ddx2110076.976ENSAMEG00000017978DDX2110076.861Ailuropoda_melanoleuca
ENSMUSG00000020075Ddx216871.256ENSACIG00000006429ddx218171.287Amphilophus_citrinellus
ENSMUSG00000020075Ddx217467.190ENSAOCG00000023174ddx217971.357Amphiprion_ocellaris
ENSMUSG00000020075Ddx217467.190ENSAPEG00000007108ddx217971.357Amphiprion_percula
ENSMUSG00000020075Ddx216871.924ENSATEG00000022194ddx218071.714Anabas_testudineus
ENSMUSG00000020075Ddx217072.890ENSAPLG00000013022-9670.721Anas_platyrhynchos
ENSMUSG00000020075Ddx217172.386ENSACAG00000009829DDX217474.579Anolis_carolinensis
ENSMUSG00000020075Ddx2110085.143ENSANAG00000038109DDX219394.688Aotus_nancymaae
ENSMUSG00000020075Ddx216573.418ENSACLG00000008248ddx217570.978Astatotilapia_calliptera
ENSMUSG00000020075Ddx217465.084ENSAMXG00000009140ddx218668.455Astyanax_mexicanus
ENSMUSG00000020075Ddx2110074.216ENSBTAG00000014558DDX218685.294Bos_taurus
ENSMUSG00000020075Ddx2110084.203ENSCJAG00000012876DDX2110073.837Callithrix_jacchus
ENSMUSG00000020075Ddx219388.136ENSCAFG00000013791DDX2110086.784Canis_familiaris
ENSMUSG00000020075Ddx218560.408ENSCHIG00000014104-9264.308Capra_hircus
ENSMUSG00000020075Ddx219282.706ENSCHIG00000000248-9882.566Capra_hircus
ENSMUSG00000020075Ddx217761.228ENSCHIG00000006053-8160.709Capra_hircus
ENSMUSG00000020075Ddx2110086.324ENSTSYG00000011231DDX2110073.140Carlito_syrichta
ENSMUSG00000020075Ddx219065.957ENSCAPG00000005945DDX219674.811Cavia_aperea
ENSMUSG00000020075Ddx2110076.914ENSCPOG00000015479DDX2110075.878Cavia_porcellus
ENSMUSG00000020075Ddx219987.593ENSCCAG00000026288DDX219491.420Cebus_capucinus
ENSMUSG00000020075Ddx2110081.732ENSCATG00000043540DDX2110072.875Cercocebus_atys
ENSMUSG00000020075Ddx219467.000ENSCATG00000045019-10068.909Cercocebus_atys
ENSMUSG00000020075Ddx2110074.421ENSCLAG00000012235DDX2110088.496Chinchilla_lanigera
ENSMUSG00000020075Ddx2110073.061ENSCHOG00000000234DDX2110074.543Choloepus_hoffmanni
ENSMUSG00000020075Ddx217870.833ENSCPBG00000019934-8972.274Chrysemys_picta_bellii
ENSMUSG00000020075Ddx217472.756ENSCPBG00000019937-7175.503Chrysemys_picta_bellii
ENSMUSG00000020075Ddx2110074.709ENSCANG00000039926DDX2110073.574Colobus_angolensis_palliatus
ENSMUSG00000020075Ddx2110063.221ENSCANG00000036110-8467.916Colobus_angolensis_palliatus
ENSMUSG00000020075Ddx2110076.495ENSCGRG00001017824-9581.777Cricetulus_griseus_chok1gshd
ENSMUSG00000020075Ddx219691.704ENSCGRG00001016264-9979.790Cricetulus_griseus_chok1gshd
ENSMUSG00000020075Ddx2110076.634ENSCGRG00000008450-9581.928Cricetulus_griseus_crigri
ENSMUSG00000020075Ddx219691.704ENSCGRG00000015134-9979.790Cricetulus_griseus_crigri
ENSMUSG00000020075Ddx216472.243ENSCSEG00000013939ddx217870.100Cynoglossus_semilaevis
ENSMUSG00000020075Ddx217466.928ENSCVAG00000018333ddx218468.454Cyprinodon_variegatus
ENSMUSG00000020075Ddx217468.312ENSDARG00000063626ddx217968.780Danio_rerio
ENSMUSG00000020075Ddx219679.573ENSDNOG00000001680DDX219884.257Dasypus_novemcinctus
ENSMUSG00000020075Ddx217781.669ENSDORG00000002202Ddx2110071.926Dipodomys_ordii
ENSMUSG00000020075Ddx219383.459ENSETEG00000014073DDX2110071.724Echinops_telfairi
ENSMUSG00000020075Ddx2110074.138ENSEASG00005015598DDX218685.465Equus_asinus_asinus
ENSMUSG00000020075Ddx2110074.276ENSECAG00000010810DDX218686.176Equus_caballus
ENSMUSG00000020075Ddx216783.803ENSEEUG00000005959DDX2110068.052Erinaceus_europaeus
ENSMUSG00000020075Ddx216373.557ENSELUG00000018856ddx217970.164Esox_lucius
ENSMUSG00000020075Ddx2110076.047ENSFCAG00000002109DDX2110074.826Felis_catus
ENSMUSG00000020075Ddx216378.293ENSFALG00000013022-8674.916Ficedula_albicollis
ENSMUSG00000020075Ddx216470.826ENSFALG00000013043-8568.591Ficedula_albicollis
ENSMUSG00000020075Ddx2110073.140ENSFDAG00000007401DDX218787.059Fukomys_damarensis
ENSMUSG00000020075Ddx216373.783ENSFHEG00000019089ddx218069.915Fundulus_heteroclitus
ENSMUSG00000020075Ddx216367.664ENSGMOG00000012354ddx219963.651Gadus_morhua
ENSMUSG00000020075Ddx218261.003ENSGALG00000042254-8669.426Gallus_gallus
ENSMUSG00000020075Ddx217668.589ENSGALG00000004144-9569.449Gallus_gallus
ENSMUSG00000020075Ddx216969.831ENSGAFG00000003427ddx217970.833Gambusia_affinis
ENSMUSG00000020075Ddx216373.645ENSGACG00000016060ddx219069.687Gasterosteus_aculeatus
ENSMUSG00000020075Ddx217172.533ENSGAGG00000022169-8870.690Gopherus_agassizii
ENSMUSG00000020075Ddx217969.809ENSGAGG00000022163-8669.809Gopherus_agassizii
ENSMUSG00000020075Ddx219988.490ENSGGOG00000005065DDX2110074.242Gorilla_gorilla
ENSMUSG00000020075Ddx216573.418ENSHBUG00000017638ddx217571.215Haplochromis_burtoni
ENSMUSG00000020075Ddx2110075.204ENSHGLG00000013902DDX218787.647Heterocephalus_glaber_female
ENSMUSG00000020075Ddx2110075.204ENSHGLG00100015956DDX219688.410Heterocephalus_glaber_male
ENSMUSG00000020075Ddx216770.280ENSHCOG00000014503ddx218170.569Hippocampus_comes
ENSMUSG00000020075Ddx217964.897ENSIPUG00000006972ddx217871.880Ictalurus_punctatus
ENSMUSG00000020075Ddx2110080.952ENSSTOG00000011572DDX2110076.512Ictidomys_tridecemlineatus
ENSMUSG00000020075Ddx2110081.736ENSJJAG00000014035Ddx2110077.283Jaculus_jaculus
ENSMUSG00000020075Ddx216868.675ENSKMAG00000020766ddx217969.717Kryptolebias_marmoratus
ENSMUSG00000020075Ddx217068.988ENSLBEG00000001244ddx217970.930Labrus_bergylta
ENSMUSG00000020075Ddx217171.736ENSLACG00000000658DDX219973.244Latimeria_chalumnae
ENSMUSG00000020075Ddx216474.354ENSLOCG00000009123ddx217771.310Lepisosteus_oculatus
ENSMUSG00000020075Ddx2110085.000ENSLAFG00000007962DDX218685.505Loxodonta_africana
ENSMUSG00000020075Ddx219887.294ENSMFAG00000044838DDX219393.603Macaca_fascicularis
ENSMUSG00000020075Ddx219466.952ENSMFAG00000033536-10068.852Macaca_fascicularis
ENSMUSG00000020075Ddx219470.228ENSMMUG00000032331-10072.280Macaca_mulatta
ENSMUSG00000020075Ddx219887.294ENSMMUG00000001005DDX2110072.875Macaca_mulatta
ENSMUSG00000020075Ddx219887.294ENSMNEG00000032825DDX2110072.875Macaca_nemestrina
ENSMUSG00000020075Ddx219467.429ENSMLEG00000028215-10069.357Mandrillus_leucophaeus
ENSMUSG00000020075Ddx2110072.526ENSMLEG00000028940DDX219193.060Mandrillus_leucophaeus
ENSMUSG00000020075Ddx218063.097ENSMAMG00000019683ddx218368.937Mastacembelus_armatus
ENSMUSG00000020075Ddx216573.418ENSMZEG00005011618ddx218070.978Maylandia_zebra
ENSMUSG00000020075Ddx216974.411ENSMGAG00000004298DDX219970.852Meleagris_gallopavo
ENSMUSG00000020075Ddx219583.533ENSMAUG00000011153Ddx2110080.210Mesocricetus_auratus
ENSMUSG00000020075Ddx219785.420ENSMICG00000015112-10085.862Microcebus_murinus
ENSMUSG00000020075Ddx218274.028ENSMICG00000033371-10077.761Microcebus_murinus
ENSMUSG00000020075Ddx2110090.115ENSMOCG00000020855Ddx2110083.333Microtus_ochrogaster
ENSMUSG00000020075Ddx215774.274ENSMMOG00000015938ddx219174.274Mola_mola
ENSMUSG00000020075Ddx217969.985ENSMODG00000010727DDX219070.953Monodelphis_domestica
ENSMUSG00000020075Ddx217265.316ENSMALG00000010489ddx219068.020Monopterus_albus
ENSMUSG00000020075Ddx2110091.250MGP_CAROLIEiJ_G0015388Ddx2110082.961Mus_caroli
ENSMUSG00000020075Ddx2110098.944MGP_SPRETEiJ_G0016199Ddx2110098.944Mus_spretus
ENSMUSG00000020075Ddx2110086.628ENSMPUG00000004603DDX2110073.848Mustela_putorius_furo
ENSMUSG00000020075Ddx219976.074ENSMLUG00000023298DDX219975.698Myotis_lucifugus
ENSMUSG00000020075Ddx2110079.930ENSNGAG00000022273Ddx2110081.447Nannospalax_galili
ENSMUSG00000020075Ddx216573.418ENSNBRG00000006198ddx218070.833Neolamprologus_brichardi
ENSMUSG00000020075Ddx2110085.429ENSNLEG00000011591DDX2110088.191Nomascus_leucogenys
ENSMUSG00000020075Ddx219375.373ENSOPRG00000001640DDX219969.961Ochotona_princeps
ENSMUSG00000020075Ddx219362.186ENSODEG00000012879-9960.875Octodon_degus
ENSMUSG00000020075Ddx216573.779ENSONIG00000005499ddx217571.429Oreochromis_niloticus
ENSMUSG00000020075Ddx217769.729ENSOANG00000004777DDX218270.652Ornithorhynchus_anatinus
ENSMUSG00000020075Ddx219977.183ENSOCUG00000002888DDX219976.950Oryctolagus_cuniculus
ENSMUSG00000020075Ddx216572.545ENSORLG00000010122ddx219270.284Oryzias_latipes
ENSMUSG00000020075Ddx217169.205ENSORLG00020004409ddx219170.284Oryzias_latipes_hni
ENSMUSG00000020075Ddx216473.063ENSORLG00015000051ddx219270.117Oryzias_latipes_hsok
ENSMUSG00000020075Ddx217368.006ENSOMEG00000004523ddx217770.248Oryzias_melastigma
ENSMUSG00000020075Ddx217180.731ENSOGAG00000031242-9879.705Otolemur_garnettii
ENSMUSG00000020075Ddx2110069.697ENSOGAG00000001846-10072.738Otolemur_garnettii
ENSMUSG00000020075Ddx2110085.735ENSOARG00000005307DDX2110080.474Ovis_aries
ENSMUSG00000020075Ddx219988.640ENSPPAG00000036670DDX2110074.359Pan_paniscus
ENSMUSG00000020075Ddx2110076.163ENSPPRG00000012523DDX2110074.942Panthera_pardus
ENSMUSG00000020075Ddx2110075.930ENSPTIG00000007268DDX2110074.710Panthera_tigris_altaica
ENSMUSG00000020075Ddx219988.640ENSPTRG00000002563DDX2110074.359Pan_troglodytes
ENSMUSG00000020075Ddx219466.857ENSPANG00000031334-10068.759Papio_anubis
ENSMUSG00000020075Ddx2110075.087ENSPANG00000022140DDX2110072.875Papio_anubis
ENSMUSG00000020075Ddx218260.734ENSPKIG00000014660ddx218368.599Paramormyrops_kingsleyae
ENSMUSG00000020075Ddx217471.924ENSPSIG00000004724DDX218674.290Pelodiscus_sinensis
ENSMUSG00000020075Ddx2110078.813ENSPEMG00000018513Ddx2110082.907Peromyscus_maniculatus_bairdii
ENSMUSG00000020075Ddx219463.782ENSPCIG00000015505DDX218676.471Phascolarctos_cinereus
ENSMUSG00000020075Ddx216970.137ENSPFOG00000016196ddx217868.082Poecilia_formosa
ENSMUSG00000020075Ddx216272.316ENSPLAG00000017849ddx218568.896Poecilia_latipinna
ENSMUSG00000020075Ddx216970.137ENSPMEG00000014571ddx217868.196Poecilia_mexicana
ENSMUSG00000020075Ddx219988.191ENSPPYG00000002389DDX2110074.009Pongo_abelii
ENSMUSG00000020075Ddx219078.756ENSPCAG00000016697DDX2110075.431Procavia_capensis
ENSMUSG00000020075Ddx217784.370ENSPCOG00000019284DDX2110077.113Propithecus_coquereli
ENSMUSG00000020075Ddx219787.500ENSPVAG00000009521DDX218687.500Pteropus_vampyrus
ENSMUSG00000020075Ddx216273.855ENSPNYG00000015566ddx219371.157Pundamilia_nyererei
ENSMUSG00000020075Ddx216670.745ENSPNAG00000004814ddx218069.930Pygocentrus_nattereri
ENSMUSG00000020075Ddx2110084.903ENSRNOG00000048990AABR07037356.110082.867Rattus_norvegicus
ENSMUSG00000020075Ddx2110080.420ENSRNOG00000043099Ddx2110083.333Rattus_norvegicus
ENSMUSG00000020075Ddx2110075.437ENSRBIG00000043721-9092.191Rhinopithecus_bieti
ENSMUSG00000020075Ddx2110075.716ENSRBIG00000035862-9087.705Rhinopithecus_bieti
ENSMUSG00000020075Ddx2110075.320ENSRROG00000033387DDX2110073.543Rhinopithecus_roxellana
ENSMUSG00000020075Ddx219961.361ENSSBOG00000025801-8663.976Saimiri_boliviensis_boliviensis
ENSMUSG00000020075Ddx218262.937ENSSFOG00015014610ddx219269.799Scleropages_formosus
ENSMUSG00000020075Ddx216373.645ENSSMAG00000003932ddx217970.100Scophthalmus_maximus
ENSMUSG00000020075Ddx216572.958ENSSDUG00000021420ddx217971.215Seriola_dumerili
ENSMUSG00000020075Ddx216572.727ENSSLDG00000025665ddx219470.695Seriola_lalandi_dorsalis
ENSMUSG00000020075Ddx217165.278ENSSARG00000014024-6968.056Sorex_araneus
ENSMUSG00000020075Ddx217173.311ENSSPUG00000004088DDX218174.874Sphenodon_punctatus
ENSMUSG00000020075Ddx216671.228ENSSPAG00000013142ddx217971.595Stegastes_partitus
ENSMUSG00000020075Ddx2110075.553ENSSSCG00000010247DDX218686.176Sus_scrofa
ENSMUSG00000020075Ddx216379.925ENSTGUG00000003810-8675.753Taeniopygia_guttata
ENSMUSG00000020075Ddx216374.815ENSTRUG00000017570ddx218271.477Takifugu_rubripes
ENSMUSG00000020075Ddx217069.900ENSTNIG00000013798ddx219670.167Tetraodon_nigroviridis
ENSMUSG00000020075Ddx217977.266ENSTBEG00000002310DDX218677.266Tupaia_belangeri
ENSMUSG00000020075Ddx2110073.488ENSTTRG00000016398DDX218684.265Tursiops_truncatus
ENSMUSG00000020075Ddx2110085.714ENSUMAG00000007735DDX2110075.604Ursus_maritimus
ENSMUSG00000020075Ddx218876.064ENSVPAG00000000627DDX218489.161Vicugna_pacos
ENSMUSG00000020075Ddx219786.910ENSVVUG00000020486DDX2110085.631Vulpes_vulpes
ENSMUSG00000020075Ddx216271.940ENSXCOG00000009654ddx218168.739Xiphophorus_couchianus
ENSMUSG00000020075Ddx217366.720ENSXMAG00000008199ddx218367.677Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0002376immune system process-IEAProcess
GO:0002735positive regulation of myeloid dendritic cell cytokine production21703541.IMPProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding10860663.ISSFunction
GO:0003724RNA helicase activity10860663.ISSFunction
GO:0003725double-stranded RNA binding21703541.IDAFunction
GO:0004004ATP-dependent RNA helicase activity-ISOFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding21703541.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005634nucleus10860663.ISSComponent
GO:0005730nucleolus-ISOComponent
GO:0005730nucleolus10860663.ISSComponent
GO:0005737cytoplasm-IEAComponent
GO:0005739mitochondrion21703541.NASComponent
GO:0005829cytosol21703541.IDAComponent
GO:0006364rRNA processing-IEAProcess
GO:0006366transcription by RNA polymerase II-ISOProcess
GO:0009615response to virus21703541.IMPProcess
GO:0016787hydrolase activity-IEAFunction
GO:0019843rRNA binding-ISOFunction
GO:0030515snoRNA binding-ISOFunction
GO:0035198miRNA binding-ISOFunction
GO:0042802identical protein binding21703541.IDAFunction
GO:0043123positive regulation of I-kappaB kinase/NF-kappaB signaling21703541.IMPProcess
GO:0043330response to exogenous dsRNA21703541.IMPProcess
GO:0045087innate immune response-IEAProcess
GO:0051607defense response to virus-IEAProcess
GO:00973227SK snRNA binding-ISOFunction

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