EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020076 (Gene tree)
Gene ID: 94213
Gene Symbol: Ddx50
Alias: 4933429B04Rik|8430408E17Rik|GU2|RH-II/Gubeta
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 35324 bases
Position: chr10:62615895-62651218
Accession: 2182303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020270	GUCT	PF08152.12	6.1e-28	1	1
ENSMUSP00000151469	GUCT	PF08152.12	2e-07	1	1
ENSMUSP00000020270	ResIII	PF04851.15	7.5e-10	1	1
ENSMUSP00000020270	DEAD	PF00270.29	2.4e-47	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000218372	-	2375	-	-	- (aa)	-	-
ENSMUST00000218304	-	746	-	ENSMUSP00000151469	134 (aa)	-	A0A1W2P700
ENSMUST00000219076	-	558	-	-	- (aa)	-	-
ENSMUST00000218158	-	1500	-	-	- (aa)	-	-
ENSMUST00000220370	-	584	-	-	- (aa)	-	-
ENSMUST00000218224	-	2681	-	-	- (aa)	-	-
ENSMUST00000217970	-	4135	-	-	- (aa)	-	-
ENSMUST00000020270	-	2535	XM_006514345	ENSMUSP00000020270	734 (aa)	XP_006514408	Q99MJ9

Gene Model

Click here to download ENSMUSG00000020076's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020076's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020076	Ddx50	54	31.204	ENSMUSG00000030204	Ddx47	94	30.175
ENSMUSG00000020076	Ddx50	56	34.272	ENSMUSG00000017999	Ddx27	52	34.129
ENSMUSG00000020076	Ddx50	50	31.367	ENSMUSG00000094973	Gm8994	86	31.367
ENSMUSG00000020076	Ddx50	52	30.946	ENSMUSG00000107906	Gm5580	86	31.367
ENSMUSG00000020076	Ddx50	50	32.353	ENSMUSG00000025580	Eif4a3	86	32.353
ENSMUSG00000020076	Ddx50	50	31.367	ENSMUSG00000022884	Eif4a2	90	30.904
ENSMUSG00000020076	Ddx50	50	32.267	ENSMUSG00000059796	Eif4a1	88	31.720
ENSMUSG00000020076	Ddx50	82	66.446	ENSMUSG00000020075	Ddx21	71	64.217
ENSMUSG00000020076	Ddx50	50	33.962	ENSMUSG00000055065	Ddx17	77	33.333
ENSMUSG00000020076	Ddx50	51	34.351	ENSMUSG00000001674	Ddx18	57	34.351

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020076	Ddx50	92	95.575	ENSG00000107625	DDX50	92	94.838	Homo_sapiens
ENSMUSG00000020076	Ddx50	93	94.436	ENSAMEG00000017992	DDX50	92	93.814	Ailuropoda_melanoleuca
ENSMUSG00000020076	Ddx50	99	50.676	ENSANAG00000030991	-	87	75.920	Aotus_nancymaae
ENSMUSG00000020076	Ddx50	92	75.977	ENSANAG00000017785	-	91	75.398	Aotus_nancymaae
ENSMUSG00000020076	Ddx50	100	95.251	ENSBTAG00000033413	DDX50	92	94.838	Bos_taurus
ENSMUSG00000020076	Ddx50	92	95.575	ENSCJAG00000018844	DDX50	99	97.347	Callithrix_jacchus
ENSMUSG00000020076	Ddx50	93	94.876	ENSCAFG00000013776	DDX50	99	94.256	Canis_familiaris
ENSMUSG00000020076	Ddx50	93	94.876	ENSCAFG00020025977	DDX50	92	94.256	Canis_lupus_dingo
ENSMUSG00000020076	Ddx50	100	94.980	ENSCHIG00000000285	DDX50	92	94.543	Capra_hircus
ENSMUSG00000020076	Ddx50	92	94.985	ENSTSYG00000004192	DDX50	99	97.326	Carlito_syrichta
ENSMUSG00000020076	Ddx50	91	75.334	ENSCAPG00000007230	-	87	77.504	Cavia_aperea
ENSMUSG00000020076	Ddx50	91	95.245	ENSCPOG00000002131	-	92	95.126	Cavia_porcellus
ENSMUSG00000020076	Ddx50	82	92.473	ENSCCAG00000030543	DDX50	90	92.473	Cebus_capucinus
ENSMUSG00000020076	Ddx50	99	64.595	ENSCATG00000039259	-	89	65.492	Cercocebus_atys
ENSMUSG00000020076	Ddx50	98	70.180	ENSCATG00000035153	-	89	88.401	Cercocebus_atys
ENSMUSG00000020076	Ddx50	92	92.762	ENSCATG00000032463	DDX50	92	92.171	Cercocebus_atys
ENSMUSG00000020076	Ddx50	99	71.622	ENSCLAG00000001938	-	91	69.124	Chinchilla_lanigera
ENSMUSG00000020076	Ddx50	100	95.924	ENSCLAG00000012957	-	100	95.924	Chinchilla_lanigera
ENSMUSG00000020076	Ddx50	96	76.923	ENSCLAG00000001553	-	79	87.742	Chinchilla_lanigera
ENSMUSG00000020076	Ddx50	92	95.575	ENSCSAG00000007703	DDX50	92	94.985	Chlorocebus_sabaeus
ENSMUSG00000020076	Ddx50	88	92.604	ENSCHOG00000000233	DDX50	97	92.142	Choloepus_hoffmanni
ENSMUSG00000020076	Ddx50	99	66.892	ENSCANG00000018820	-	88	71.130	Colobus_angolensis_palliatus
ENSMUSG00000020076	Ddx50	96	66.246	ENSCANG00000028077	-	91	65.689	Colobus_angolensis_palliatus
ENSMUSG00000020076	Ddx50	100	81.954	ENSCANG00000036450	-	100	81.954	Colobus_angolensis_palliatus
ENSMUSG00000020076	Ddx50	100	97.418	ENSCGRG00001020223	Ddx50	100	97.418	Cricetulus_griseus_chok1gshd
ENSMUSG00000020076	Ddx50	100	97.147	ENSCGRG00000015884	Ddx50	100	97.147	Cricetulus_griseus_crigri
ENSMUSG00000020076	Ddx50	87	88.099	ENSDNOG00000001675	DDX50	100	88.099	Dasypus_novemcinctus
ENSMUSG00000020076	Ddx50	92	95.280	ENSDORG00000007310	Ddx50	92	94.838	Dipodomys_ordii
ENSMUSG00000020076	Ddx50	90	97.124	ENSETEG00000014069	DDX50	90	97.124	Echinops_telfairi
ENSMUSG00000020076	Ddx50	93	94.575	ENSEASG00005015595	DDX50	92	94.100	Equus_asinus_asinus
ENSMUSG00000020076	Ddx50	93	94.575	ENSECAG00000023044	DDX50	92	94.100	Equus_caballus
ENSMUSG00000020076	Ddx50	86	95.833	ENSEEUG00000005782	DDX50	79	97.477	Erinaceus_europaeus
ENSMUSG00000020076	Ddx50	92	95.140	ENSFCAG00000012678	DDX50	92	94.551	Felis_catus
ENSMUSG00000020076	Ddx50	92	88.496	ENSFDAG00000016109	-	91	87.758	Fukomys_damarensis
ENSMUSG00000020076	Ddx50	97	50.345	ENSGGOG00000022568	-	91	78.154	Gorilla_gorilla
ENSMUSG00000020076	Ddx50	99	71.622	ENSGGOG00000041063	-	82	83.699	Gorilla_gorilla
ENSMUSG00000020076	Ddx50	92	95.575	ENSGGOG00000010100	DDX50	99	97.861	Gorilla_gorilla
ENSMUSG00000020076	Ddx50	92	93.805	ENSHGLG00000013466	DDX50	92	93.215	Heterocephalus_glaber_female
ENSMUSG00000020076	Ddx50	82	86.702	ENSHGLG00100006568	-	92	86.702	Heterocephalus_glaber_male
ENSMUSG00000020076	Ddx50	92	93.805	ENSHGLG00100017191	DDX50	92	93.215	Heterocephalus_glaber_male
ENSMUSG00000020076	Ddx50	100	93.902	ENSSTOG00000021852	-	92	93.078	Ictidomys_tridecemlineatus
ENSMUSG00000020076	Ddx50	100	72.838	ENSJJAG00000019626	-	91	73.494	Jaculus_jaculus
ENSMUSG00000020076	Ddx50	100	94.158	ENSJJAG00000023928	-	92	93.796	Jaculus_jaculus
ENSMUSG00000020076	Ddx50	92	95.575	ENSLAFG00000006186	DDX50	92	94.985	Loxodonta_africana
ENSMUSG00000020076	Ddx50	92	95.575	ENSMFAG00000044067	DDX50	92	94.985	Macaca_fascicularis
ENSMUSG00000020076	Ddx50	98	70.556	ENSMFAG00000045339	-	89	87.774	Macaca_fascicularis
ENSMUSG00000020076	Ddx50	80	67.288	ENSMMUG00000045343	-	90	59.882	Macaca_mulatta
ENSMUSG00000020076	Ddx50	92	95.575	ENSMMUG00000001006	DDX50	100	96.429	Macaca_mulatta
ENSMUSG00000020076	Ddx50	98	70.994	ENSMNEG00000045530	-	89	88.715	Macaca_nemestrina
ENSMUSG00000020076	Ddx50	92	88.643	ENSMNEG00000031664	DDX50	92	88.053	Macaca_nemestrina
ENSMUSG00000020076	Ddx50	62	69.388	ENSMNEG00000034754	-	89	72.923	Macaca_nemestrina
ENSMUSG00000020076	Ddx50	92	93.658	ENSMLEG00000037313	DDX50	92	93.068	Mandrillus_leucophaeus
ENSMUSG00000020076	Ddx50	86	83.411	ENSMLEG00000041988	-	89	86.822	Mandrillus_leucophaeus
ENSMUSG00000020076	Ddx50	56	95.631	ENSMAUG00000022192	Ddx50	100	94.903	Mesocricetus_auratus
ENSMUSG00000020076	Ddx50	55	79.775	ENSMAUG00000011906	-	100	93.314	Mesocricetus_auratus
ENSMUSG00000020076	Ddx50	55	79.775	ENSMAUG00000000119	-	100	93.314	Mesocricetus_auratus
ENSMUSG00000020076	Ddx50	100	88.451	ENSMICG00000017539	DDX50	100	88.451	Microcebus_murinus
ENSMUSG00000020076	Ddx50	100	96.612	ENSMOCG00000001676	Ddx50	100	96.612	Microtus_ochrogaster
ENSMUSG00000020076	Ddx50	92	79.941	ENSMODG00000010741	DDX50	92	79.971	Monodelphis_domestica
ENSMUSG00000020076	Ddx50	100	99.455	MGP_CAROLIEiJ_G0015389	Ddx50	100	99.455	Mus_caroli
ENSMUSG00000020076	Ddx50	100	99.591	MGP_PahariEiJ_G0030805	Ddx50	100	99.591	Mus_pahari
ENSMUSG00000020076	Ddx50	100	100.000	MGP_SPRETEiJ_G0016200	Ddx50	100	100.000	Mus_spretus
ENSMUSG00000020076	Ddx50	88	94.590	ENSMPUG00000004589	DDX50	99	94.590	Mustela_putorius_furo
ENSMUSG00000020076	Ddx50	92	92.773	ENSMLUG00000017590	DDX50	92	92.183	Myotis_lucifugus
ENSMUSG00000020076	Ddx50	100	96.875	ENSNGAG00000004283	Ddx50	100	96.875	Nannospalax_galili
ENSMUSG00000020076	Ddx50	92	95.575	ENSNLEG00000011631	DDX50	92	94.838	Nomascus_leucogenys
ENSMUSG00000020076	Ddx50	88	66.718	ENSNLEG00000035506	-	88	77.570	Nomascus_leucogenys
ENSMUSG00000020076	Ddx50	92	93.205	ENSOPRG00000001619	DDX50	92	93.353	Ochotona_princeps
ENSMUSG00000020076	Ddx50	100	95.380	ENSODEG00000014597	-	100	95.380	Octodon_degus
ENSMUSG00000020076	Ddx50	93	67.001	ENSOANG00000004776	DDX50	80	68.976	Ornithorhynchus_anatinus
ENSMUSG00000020076	Ddx50	100	91.033	ENSOCUG00000002879	DDX50	95	94.387	Oryctolagus_cuniculus
ENSMUSG00000020076	Ddx50	92	94.985	ENSOGAG00000001844	DDX50	92	94.395	Otolemur_garnettii
ENSMUSG00000020076	Ddx50	100	94.980	ENSOARG00000005264	DDX50	92	94.543	Ovis_aries
ENSMUSG00000020076	Ddx50	97	49.655	ENSPPAG00000026788	-	90	78.193	Pan_paniscus
ENSMUSG00000020076	Ddx50	92	95.428	ENSPPAG00000040723	DDX50	92	94.690	Pan_paniscus
ENSMUSG00000020076	Ddx50	86	74.615	ENSPPAG00000033902	-	87	82.759	Pan_paniscus
ENSMUSG00000020076	Ddx50	92	95.140	ENSPPRG00000015826	DDX50	92	94.551	Panthera_pardus
ENSMUSG00000020076	Ddx50	92	95.140	ENSPTIG00000008454	DDX50	92	94.551	Panthera_tigris_altaica
ENSMUSG00000020076	Ddx50	97	49.655	ENSPTRG00000044913	-	99	71.053	Pan_troglodytes
ENSMUSG00000020076	Ddx50	92	95.428	ENSPTRG00000002562	DDX50	92	94.690	Pan_troglodytes
ENSMUSG00000020076	Ddx50	92	87.758	ENSPANG00000022143	-	92	87.168	Papio_anubis
ENSMUSG00000020076	Ddx50	62	69.388	ENSPANG00000032548	-	89	73.538	Papio_anubis
ENSMUSG00000020076	Ddx50	92	95.569	ENSPEMG00000020899	-	92	95.126	Peromyscus_maniculatus_bairdii
ENSMUSG00000020076	Ddx50	98	75.620	ENSPCIG00000016036	DDX50	94	79.148	Phascolarctos_cinereus
ENSMUSG00000020076	Ddx50	91	96.429	ENSPPYG00000002390	DDX50	100	96.429	Pongo_abelii
ENSMUSG00000020076	Ddx50	84	80.163	ENSPCAG00000009692	DDX50	100	80.163	Procavia_capensis
ENSMUSG00000020076	Ddx50	79	84.526	ENSPCOG00000012574	DDX50	88	84.526	Propithecus_coquereli
ENSMUSG00000020076	Ddx50	86	90.083	ENSPVAG00000009519	DDX50	78	90.358	Pteropus_vampyrus
ENSMUSG00000020076	Ddx50	100	99.046	ENSRNOG00000000396	Ddx50	100	99.046	Rattus_norvegicus
ENSMUSG00000020076	Ddx50	99	66.393	ENSRBIG00000036573	-	92	66.071	Rhinopithecus_bieti
ENSMUSG00000020076	Ddx50	87	93.779	ENSRBIG00000042841	-	98	96.048	Rhinopithecus_bieti
ENSMUSG00000020076	Ddx50	99	68.027	ENSRBIG00000039673	-	90	63.529	Rhinopithecus_bieti
ENSMUSG00000020076	Ddx50	99	70.946	ENSRROG00000022853	-	91	63.111	Rhinopithecus_roxellana
ENSMUSG00000020076	Ddx50	99	55.782	ENSRROG00000031940	-	87	73.846	Rhinopithecus_roxellana
ENSMUSG00000020076	Ddx50	92	95.428	ENSRROG00000032158	DDX50	100	96.285	Rhinopithecus_roxellana
ENSMUSG00000020076	Ddx50	92	84.071	ENSSBOG00000014441	DDX50	99	84.762	Saimiri_boliviensis_boliviensis
ENSMUSG00000020076	Ddx50	88	80.458	ENSSHAG00000005690	DDX50	91	80.395	Sarcophilus_harrisii
ENSMUSG00000020076	Ddx50	79	67.613	ENSSHAG00000005334	-	80	67.423	Sarcophilus_harrisii
ENSMUSG00000020076	Ddx50	100	78.125	ENSSARG00000013553	DDX50	88	84.783	Sorex_araneus
ENSMUSG00000020076	Ddx50	100	93.894	ENSSSCG00000010246	DDX50	92	93.363	Sus_scrofa
ENSMUSG00000020076	Ddx50	96	73.521	ENSTBEG00000001085	DDX50	92	72.378	Tupaia_belangeri
ENSMUSG00000020076	Ddx50	100	88.195	ENSTTRG00000012408	DDX50	99	88.195	Tursiops_truncatus
ENSMUSG00000020076	Ddx50	93	94.729	ENSUAMG00000010976	DDX50	99	97.782	Ursus_americanus
ENSMUSG00000020076	Ddx50	93	94.729	ENSUMAG00000007726	DDX50	92	94.109	Ursus_maritimus
ENSMUSG00000020076	Ddx50	92	94.100	ENSVPAG00000000626	DDX50	92	93.658	Vicugna_pacos
ENSMUSG00000020076	Ddx50	99	85.135	ENSVVUG00000020366	DDX50	98	97.594	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function