EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000020283	-	2175	XM_006513833	ENSMUSP00000020283	372 (aa)	XP_006513896	Q8CCK0

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04217	Necroptosis	KEGG
mmu05034	Alcoholism	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000786	nucleosome	-	IEA	Component
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001740	Barr body	11331621.	ISO	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006325	chromatin organization	21873635.	IBA	Process
GO:0006334	nucleosome assembly	-	IEA	Process
GO:0007420	brain development	-	ISO	Process
GO:0007549	dosage compensation	11331621.	ISO	Process
GO:0031490	chromatin DNA binding	-	ISO	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045618	positive regulation of keratinocyte differentiation	-	ISO	Process
GO:0045814	negative regulation of gene expression, epigenetic	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	IEA	Function
GO:0071169	establishment of protein localization to chromatin	-	ISO	Process
GO:1901837	negative regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	ISO	Process