EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020149 (Gene tree)
Gene ID: 19324
Gene Symbol: Rab1a
Alias: Gtbp|Rab-1|Rab1|Ypt1|ras-related YPT1 protein
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 25425 bases
Position: chr11:20201432-20226856
Accession: 97842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020358	MMR_HSR1	PF01926.23	3.3e-05	1	1
ENSMUSP00000127330	MMR_HSR1	PF01926.23	3.5e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000132285	-	962	-	-	- (aa)	-	-
ENSMUST00000109601	-	1200	-	ENSMUSP00000105230	126 (aa)	-	Q5SW86
ENSMUST00000152728	-	702	-	-	- (aa)	-	-
ENSMUST00000020358	-	2827	-	ENSMUSP00000020358	202 (aa)	-	Q5SW88
ENSMUST00000163483	-	2657	-	ENSMUSP00000127330	205 (aa)	-	P62821
ENSMUST00000109602	-	2626	-	ENSMUSP00000105231	138 (aa)	-	Q5SW87

Gene Model

Click here to download ENSMUSG00000020149's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05134	Legionellosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020149's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020149	Rab1a	77	38.994	ENSMUSG00000043463	Rab9b	79	38.994
ENSMUSG00000020149	Rab1a	100	45.581	ENSMUSG00000077450	Rab11b	98	53.425
ENSMUSG00000020149	Rab1a	62	31.061	ENSMUSG00000098207	Arl14	65	31.061
ENSMUSG00000020149	Rab1a	97	33.175	ENSMUSG00000020175	Rab36	79	33.175
ENSMUSG00000020149	Rab1a	58	33.058	ENSMUSG00000024944	Arl2	61	33.058
ENSMUSG00000020149	Rab1a	80	31.902	ENSMUSG00000083649	Rasl2-9	73	31.902
ENSMUSG00000020149	Rab1a	58	31.933	ENSMUSG00000047446	Arl4a	59	31.933
ENSMUSG00000020149	Rab1a	96	43.814	ENSMUSG00000017831	Rab5a	90	43.814
ENSMUSG00000020149	Rab1a	98	46.465	ENSMUSG00000022159	Rab2b	92	46.465
ENSMUSG00000020149	Rab1a	83	32.544	ENSMUSG00000028945	Rheb	91	32.544
ENSMUSG00000020149	Rab1a	96	38.384	ENSMUSG00000030704	Rab6a	94	38.384
ENSMUSG00000020149	Rab1a	81	38.415	ENSMUSG00000027852	Nras	96	39.041
ENSMUSG00000020149	Rab1a	87	43.820	ENSMUSG00000031202	Rab39b	84	43.820
ENSMUSG00000020149	Rab1a	58	31.092	ENSMUSG00000049866	Arl4c	61	31.092
ENSMUSG00000020149	Rab1a	82	36.527	ENSMUSG00000032470	Mras	80	36.527
ENSMUSG00000020149	Rab1a	77	38.994	ENSMUSG00000079316	Rab9	79	38.994
ENSMUSG00000020149	Rab1a	96	43.367	ENSMUSG00000000711	Rab5b	90	43.367
ENSMUSG00000020149	Rab1a	82	50.602	ENSMUSG00000030643	Rab30	96	56.311
ENSMUSG00000020149	Rab1a	96	45.361	ENSMUSG00000073639	Rab18	93	45.361
ENSMUSG00000020149	Rab1a	58	32.203	ENSMUSG00000030105	Arl8b	61	32.203
ENSMUSG00000020149	Rab1a	83	50.296	ENSMUSG00000023460	Rab12	78	46.561
ENSMUSG00000020149	Rab1a	98	53.807	ENSMUSG00000027935	Rab13	95	53.807
ENSMUSG00000020149	Rab1a	85	35.028	ENSMUSG00000025499	Hras	93	35.028
ENSMUSG00000020149	Rab1a	96	43.434	ENSMUSG00000031104	Rab33a	83	43.434
ENSMUSG00000020149	Rab1a	76	37.580	ENSMUSG00000022621	Rabl2	67	37.580
ENSMUSG00000020149	Rab1a	82	50.909	ENSMUSG00000021062	Rab15	78	50.909
ENSMUSG00000020149	Rab1a	58	34.454	ENSMUSG00000026426	Arl8a	62	34.454
ENSMUSG00000020149	Rab1a	91	39.785	ENSMUSG00000056515	Rab31	95	39.785
ENSMUSG00000020149	Rab1a	96	43.590	ENSMUSG00000019173	Rab5c	89	43.590
ENSMUSG00000020149	Rab1a	99	44.554	ENSMUSG00000026878	Rab14	93	44.554
ENSMUSG00000020149	Rab1a	96	38.660	ENSMUSG00000027519	Rab22a	97	38.660
ENSMUSG00000020149	Rab1a	81	38.415	ENSMUSG00000030265	Kras	97	35.676
ENSMUSG00000020149	Rab1a	83	45.238	ENSMUSG00000020732	Rab37	78	45.238
ENSMUSG00000020149	Rab1a	83	45.833	ENSMUSG00000008601	Rab25	79	45.833
ENSMUSG00000020149	Rab1a	85	52.299	ENSMUSG00000004771	Rab11a	100	50.000
ENSMUSG00000020149	Rab1a	69	30.201	ENSMUSG00000034936	Arl4d	73	30.201
ENSMUSG00000020149	Rab1a	98	34.518	ENSMUSG00000064147	Rab44	63	38.182
ENSMUSG00000020149	Rab1a	78	40.373	ENSMUSG00000002059	Rab34	60	47.899
ENSMUSG00000020149	Rab1a	79	39.264	ENSMUSG00000079477	Rab7	98	39.583
ENSMUSG00000020149	Rab1a	84	43.429	ENSMUSG00000027739	Rab33b	76	43.429
ENSMUSG00000020149	Rab1a	100	92.079	ENSMUSG00000024870	Rab1b	100	92.079
ENSMUSG00000020149	Rab1a	92	48.108	ENSMUSG00000047187	Rab2a	99	45.238
ENSMUSG00000020149	Rab1a	82	34.337	ENSMUSG00000004768	Rab23	70	34.337
ENSMUSG00000020149	Rab1a	96	36.410	ENSMUSG00000032549	Rab6b	94	36.410
ENSMUSG00000020149	Rab1a	69	30.496	ENSMUSG00000025035	Arl3	72	30.496
ENSMUSG00000020149	Rab1a	100	53.960	ENSMUSG00000029518	Rab35	100	53.960

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020149	Rab1a	100	100.000	ENSG00000138069	RAB1A	100	100.000	Homo_sapiens
ENSMUSG00000020149	Rab1a	100	95.545	ENSAPOG00000008143	-	100	95.545	Acanthochromis_polyacanthus
ENSMUSG00000020149	Rab1a	100	100.000	ENSAMEG00000001127	RAB1A	100	100.000	Ailuropoda_melanoleuca
ENSMUSG00000020149	Rab1a	100	95.545	ENSAOCG00000020606	-	100	95.545	Amphiprion_ocellaris
ENSMUSG00000020149	Rab1a	100	95.545	ENSAPEG00000022488	-	100	95.545	Amphiprion_percula
ENSMUSG00000020149	Rab1a	100	100.000	ENSANAG00000020929	RAB1A	100	100.000	Aotus_nancymaae
ENSMUSG00000020149	Rab1a	100	96.040	ENSACLG00000003326	-	100	96.040	Astatotilapia_calliptera
ENSMUSG00000020149	Rab1a	100	94.554	ENSAMXG00000034850	-	100	94.554	Astyanax_mexicanus
ENSMUSG00000020149	Rab1a	100	100.000	ENSBTAG00000016720	RAB1A	100	100.000	Bos_taurus
ENSMUSG00000020149	Rab1a	100	100.000	ENSCJAG00000046275	RAB1A	100	100.000	Callithrix_jacchus
ENSMUSG00000020149	Rab1a	100	100.000	ENSCAFG00000003187	RAB1A	100	100.000	Canis_familiaris
ENSMUSG00000020149	Rab1a	100	100.000	ENSCAFG00020026971	RAB1A	100	100.000	Canis_lupus_dingo
ENSMUSG00000020149	Rab1a	98	100.000	ENSCHIG00000014060	RAB1A	96	100.000	Capra_hircus
ENSMUSG00000020149	Rab1a	100	98.515	ENSTSYG00000005996	RAB1A	100	100.000	Carlito_syrichta
ENSMUSG00000020149	Rab1a	100	100.000	ENSCPOG00000015437	RAB1A	100	100.000	Cavia_porcellus
ENSMUSG00000020149	Rab1a	100	100.000	ENSCCAG00000021869	RAB1A	100	100.000	Cebus_capucinus
ENSMUSG00000020149	Rab1a	100	100.000	ENSCATG00000030853	RAB1A	100	100.000	Cercocebus_atys
ENSMUSG00000020149	Rab1a	100	100.000	ENSCLAG00000014766	RAB1A	100	100.000	Chinchilla_lanigera
ENSMUSG00000020149	Rab1a	100	99.512	ENSCPBG00000013243	RAB1A	100	99.512	Chrysemys_picta_bellii
ENSMUSG00000020149	Rab1a	100	97.561	ENSCANG00000035916	RAB1A	100	97.561	Colobus_angolensis_palliatus
ENSMUSG00000020149	Rab1a	100	100.000	ENSCGRG00001012691	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000020149	Rab1a	100	100.000	ENSCGRG00000008456	-	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000020149	Rab1a	100	100.000	ENSDNOG00000018236	RAB1A	100	100.000	Dasypus_novemcinctus
ENSMUSG00000020149	Rab1a	100	100.000	ENSDORG00000028628	-	100	100.000	Dipodomys_ordii
ENSMUSG00000020149	Rab1a	100	84.466	FBgn0285937	Rab1	100	84.466	Drosophila_melanogaster
ENSMUSG00000020149	Rab1a	100	100.000	ENSETEG00000002205	RAB1A	100	100.000	Echinops_telfairi
ENSMUSG00000020149	Rab1a	100	100.000	ENSEASG00005007298	RAB1A	100	100.000	Equus_asinus_asinus
ENSMUSG00000020149	Rab1a	100	100.000	ENSECAG00000009926	RAB1A	100	100.000	Equus_caballus
ENSMUSG00000020149	Rab1a	100	100.000	ENSEEUG00000011721	RAB1A	100	100.000	Erinaceus_europaeus
ENSMUSG00000020149	Rab1a	100	95.588	ENSELUG00000012166	RAB1A	96	95.588	Esox_lucius
ENSMUSG00000020149	Rab1a	100	100.000	ENSFCAG00000002536	RAB1A	100	100.000	Felis_catus
ENSMUSG00000020149	Rab1a	100	97.525	ENSFALG00000013624	RAB1A	99	97.537	Ficedula_albicollis
ENSMUSG00000020149	Rab1a	100	100.000	ENSFDAG00000019505	-	100	100.000	Fukomys_damarensis
ENSMUSG00000020149	Rab1a	100	94.554	ENSFHEG00000014414	-	100	94.554	Fundulus_heteroclitus
ENSMUSG00000020149	Rab1a	100	99.512	ENSGALG00000031582	RAB1A	100	99.512	Gallus_gallus
ENSMUSG00000020149	Rab1a	100	94.554	ENSGAFG00000000918	-	100	94.554	Gambusia_affinis
ENSMUSG00000020149	Rab1a	100	99.512	ENSGAGG00000006802	RAB1A	100	99.512	Gopherus_agassizii
ENSMUSG00000020149	Rab1a	100	100.000	ENSGGOG00000026603	RAB1A	100	100.000	Gorilla_gorilla
ENSMUSG00000020149	Rab1a	100	100.000	ENSHGLG00000013585	RAB1A	100	100.000	Heterocephalus_glaber_female
ENSMUSG00000020149	Rab1a	100	98.515	ENSHGLG00100007994	RAB1A	99	98.515	Heterocephalus_glaber_male
ENSMUSG00000020149	Rab1a	100	100.000	ENSSTOG00000020693	-	100	100.000	Ictidomys_tridecemlineatus
ENSMUSG00000020149	Rab1a	98	100.000	ENSJJAG00000014396	Rab1a	100	100.000	Jaculus_jaculus
ENSMUSG00000020149	Rab1a	98	95.431	ENSKMAG00000014038	-	93	95.431	Kryptolebias_marmoratus
ENSMUSG00000020149	Rab1a	100	95.050	ENSLBEG00000028426	RAB1A	100	95.050	Labrus_bergylta
ENSMUSG00000020149	Rab1a	100	99.010	ENSLACG00000012869	RAB1A	100	98.537	Latimeria_chalumnae
ENSMUSG00000020149	Rab1a	100	100.000	ENSLAFG00000016666	RAB1A	100	100.000	Loxodonta_africana
ENSMUSG00000020149	Rab1a	100	100.000	ENSMFAG00000046246	RAB1A	100	100.000	Macaca_fascicularis
ENSMUSG00000020149	Rab1a	98	100.000	ENSMMUG00000021721	RAB1A	91	100.000	Macaca_mulatta
ENSMUSG00000020149	Rab1a	95	99.485	ENSMNEG00000028414	-	97	99.485	Macaca_nemestrina
ENSMUSG00000020149	Rab1a	100	100.000	ENSMLEG00000042535	RAB1A	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000020149	Rab1a	100	96.040	ENSMZEG00005013959	-	100	96.040	Maylandia_zebra
ENSMUSG00000020149	Rab1a	98	99.492	ENSMGAG00000004611	RAB1A	98	99.492	Meleagris_gallopavo
ENSMUSG00000020149	Rab1a	100	99.512	ENSMAUG00000012156	Rab1a	100	99.512	Mesocricetus_auratus
ENSMUSG00000020149	Rab1a	100	100.000	ENSMICG00000012587	RAB1A	100	100.000	Microcebus_murinus
ENSMUSG00000020149	Rab1a	100	99.512	ENSMOCG00000017022	Rab1a	100	99.512	Microtus_ochrogaster
ENSMUSG00000020149	Rab1a	100	93.564	ENSMMOG00000018709	RAB1A	100	93.564	Mola_mola
ENSMUSG00000020149	Rab1a	100	99.512	ENSMODG00000003340	RAB1A	100	99.512	Monodelphis_domestica
ENSMUSG00000020149	Rab1a	100	100.000	MGP_CAROLIEiJ_G0016115	Rab1a	100	100.000	Mus_caroli
ENSMUSG00000020149	Rab1a	100	100.000	MGP_PahariEiJ_G0016776	Rab1a	100	100.000	Mus_pahari
ENSMUSG00000020149	Rab1a	100	100.000	MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	Mus_spretus
ENSMUSG00000020149	Rab1a	100	100.000	ENSMPUG00000006139	RAB1A	82	100.000	Mustela_putorius_furo
ENSMUSG00000020149	Rab1a	100	100.000	ENSMLUG00000009489	RAB1A	100	100.000	Myotis_lucifugus
ENSMUSG00000020149	Rab1a	100	100.000	ENSNGAG00000005838	Rab1a	100	100.000	Nannospalax_galili
ENSMUSG00000020149	Rab1a	100	96.040	ENSNBRG00000020492	-	100	96.040	Neolamprologus_brichardi
ENSMUSG00000020149	Rab1a	98	100.000	ENSOPRG00000006595	RAB1A	100	100.000	Ochotona_princeps
ENSMUSG00000020149	Rab1a	95	100.000	ENSODEG00000011248	-	96	100.000	Octodon_degus
ENSMUSG00000020149	Rab1a	100	94.059	ENSONIG00000006819	-	100	93.627	Oreochromis_niloticus
ENSMUSG00000020149	Rab1a	100	99.512	ENSOANG00000012438	RAB1A	100	99.512	Ornithorhynchus_anatinus
ENSMUSG00000020149	Rab1a	100	100.000	ENSOCUG00000017003	RAB1A	100	100.000	Oryctolagus_cuniculus
ENSMUSG00000020149	Rab1a	100	100.000	ENSOGAG00000026181	RAB1A	100	100.000	Otolemur_garnettii
ENSMUSG00000020149	Rab1a	98	100.000	ENSOARG00000019997	RAB1A	97	100.000	Ovis_aries
ENSMUSG00000020149	Rab1a	100	100.000	ENSPPAG00000030253	RAB1A	100	100.000	Pan_paniscus
ENSMUSG00000020149	Rab1a	100	100.000	ENSPPRG00000025077	RAB1A	100	100.000	Panthera_pardus
ENSMUSG00000020149	Rab1a	98	100.000	ENSPTIG00000013471	RAB1A	97	100.000	Panthera_tigris_altaica
ENSMUSG00000020149	Rab1a	100	100.000	ENSPTRG00000011989	RAB1A	100	100.000	Pan_troglodytes
ENSMUSG00000020149	Rab1a	100	100.000	ENSPANG00000010485	RAB1A	100	100.000	Papio_anubis
ENSMUSG00000020149	Rab1a	100	97.030	ENSPSIG00000008028	RAB1A	99	97.030	Pelodiscus_sinensis
ENSMUSG00000020149	Rab1a	100	96.040	ENSPMGG00000021015	-	99	96.040	Periophthalmus_magnuspinnatus
ENSMUSG00000020149	Rab1a	100	100.000	ENSPEMG00000009340	Rab1a	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000020149	Rab1a	100	99.512	ENSPCIG00000023212	RAB1A	100	99.512	Phascolarctos_cinereus
ENSMUSG00000020149	Rab1a	100	94.059	ENSPFOG00000000498	-	99	93.137	Poecilia_formosa
ENSMUSG00000020149	Rab1a	100	94.059	ENSPLAG00000015592	-	100	94.059	Poecilia_latipinna
ENSMUSG00000020149	Rab1a	100	94.059	ENSPMEG00000005288	-	100	94.059	Poecilia_mexicana
ENSMUSG00000020149	Rab1a	100	100.000	ENSPPYG00000012360	RAB1A	100	100.000	Pongo_abelii
ENSMUSG00000020149	Rab1a	100	100.000	ENSPCOG00000017244	RAB1A	100	100.000	Propithecus_coquereli
ENSMUSG00000020149	Rab1a	100	96.040	ENSPNYG00000015841	-	100	96.040	Pundamilia_nyererei
ENSMUSG00000020149	Rab1a	100	100.000	ENSRNOG00000004992	Rab1a	100	100.000	Rattus_norvegicus
ENSMUSG00000020149	Rab1a	100	100.000	ENSSBOG00000023732	RAB1A	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000020149	Rab1a	98	99.492	ENSSHAG00000003597	RAB1A	98	98.010	Sarcophilus_harrisii
ENSMUSG00000020149	Rab1a	100	95.545	ENSSMAG00000021049	-	100	95.545	Scophthalmus_maximus
ENSMUSG00000020149	Rab1a	100	96.040	ENSSDUG00000022535	RAB1A	100	96.040	Seriola_dumerili
ENSMUSG00000020149	Rab1a	100	99.512	ENSSPUG00000012822	RAB1A	100	99.512	Sphenodon_punctatus
ENSMUSG00000020149	Rab1a	100	95.545	ENSSPAG00000012564	-	100	95.545	Stegastes_partitus
ENSMUSG00000020149	Rab1a	100	100.000	ENSSSCG00000008359	RAB1A	100	100.000	Sus_scrofa
ENSMUSG00000020149	Rab1a	100	97.525	ENSTGUG00000002328	RAB1A	100	97.073	Taeniopygia_guttata
ENSMUSG00000020149	Rab1a	100	95.050	ENSTRUG00000024994	RAB1A	100	95.050	Takifugu_rubripes
ENSMUSG00000020149	Rab1a	98	100.000	ENSUMAG00000021038	RAB1A	99	100.000	Ursus_maritimus
ENSMUSG00000020149	Rab1a	98	99.495	ENSVPAG00000005640	RAB1A	99	99.495	Vicugna_pacos
ENSMUSG00000020149	Rab1a	100	100.000	ENSVVUG00000027588	RAB1A	100	100.000	Vulpes_vulpes
ENSMUSG00000020149	Rab1a	100	94.554	ENSXMAG00000015776	-	100	94.554	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000045	autophagosome assembly	21873635.	IBA	Process
GO:0000045	autophagosome assembly	-	ISO	Process
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0000139	Golgi membrane	-	ISO	Component
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0005515	protein binding	24549040.	IPI	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005768	endosome	-	IEA	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005794	Golgi apparatus	11042173.	IDA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006886	intracellular protein transport	11042173.	TAS	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	15728249.	ISO	Process
GO:0006897	endocytosis	-	ISO	Process
GO:0006914	autophagy	-	ISO	Process
GO:0007030	Golgi organization	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0016477	cell migration	20639577.	IMP	Process
GO:0016477	cell migration	-	ISO	Process
GO:0019068	virion assembly	-	ISO	Process
GO:0030252	growth hormone secretion	-	ISO	Process
GO:0032402	melanosome transport	22854043.	IMP	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0034446	substrate adhesion-dependent cell spreading	20639577.	IMP	Process
GO:0042470	melanosome	22854043.	IDA	Component
GO:0042742	defense response to bacterium	-	ISO	Process
GO:0043025	neuronal cell body	-	ISO	Component
GO:0047496	vesicle transport along microtubule	-	ISO	Process
GO:0072606	interleukin-8 secretion	-	ISO	Process
GO:0090110	cargo loading into COPII-coated vesicle	-	ISO	Process
GO:0098793	presynapse	-	ISO	Component
GO:1903020	positive regulation of glycoprotein metabolic process	-	ISO	Process