EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000020180 (Gene tree)
Gene ID
67332
Gene Symbol
Snrpd3
Alias
1700043E15Rik|2310009E13Rik|SMD3
Full Name
small nuclear ribonucleoprotein D3
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
19831 bases
Position
chr10:75517551-75537381
Accession
1914582
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000020397LSMPF01423.222.6e-1511
ENSMUSP00000151655LSMPF01423.222.1e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000191097-665--- (aa)--
ENSMUST00000220229-442-ENSMUSP0000015165584 (aa)-A0A1W2P7K5
ENSMUST00000020397-3036-ENSMUSP00000020397126 (aa)-P62320
Gene Model
Click here to download ENSMUSG00000020180's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu05322Systemic lupus erythematosusKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020180's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000020180Snrpd35634.722ENSMUSG00000031848Lsm46531.522
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000020180Snrpd3100100.000ENSG00000100028SNRPD3100100.000Homo_sapiens
ENSMUSG00000020180Snrpd310099.213ENSAPOG00000007512snrpd3l10099.213Acanthochromis_polyacanthus
ENSMUSG00000020180Snrpd3100100.000ENSAMEG00000013935SNRPD3100100.000Ailuropoda_melanoleuca
ENSMUSG00000020180Snrpd310099.213ENSACIG00000008871snrpd3l10099.213Amphilophus_citrinellus
ENSMUSG00000020180Snrpd310099.213ENSAOCG00000008497SNRPD310099.213Amphiprion_ocellaris
ENSMUSG00000020180Snrpd384100.000ENSAOCG00000016759-98100.000Amphiprion_ocellaris
ENSMUSG00000020180Snrpd310099.213ENSAOCG00000016743snrpd3l10099.213Amphiprion_ocellaris
ENSMUSG00000020180Snrpd310099.213ENSAOCG00000022442-10099.213Amphiprion_ocellaris
ENSMUSG00000020180Snrpd384100.000ENSAPEG00000006260-98100.000Amphiprion_percula
ENSMUSG00000020180Snrpd310099.213ENSAPEG00000006273snrpd3l10099.213Amphiprion_percula
ENSMUSG00000020180Snrpd310099.213ENSATEG00000020556snrpd3l9199.213Anabas_testudineus
ENSMUSG00000020180Snrpd3100100.000ENSAPLG00000008670SNRPD3100100.000Anas_platyrhynchos
ENSMUSG00000020180Snrpd3100100.000ENSANAG00000026106SNRPD3100100.000Aotus_nancymaae
ENSMUSG00000020180Snrpd310099.213ENSACLG00000021295snrpd3l10099.213Astatotilapia_calliptera
ENSMUSG00000020180Snrpd310095.312ENSAMXG00000038984snrpd3l10095.312Astyanax_mexicanus
ENSMUSG00000020180Snrpd3100100.000ENSBTAG00000021262SNRPD3100100.000Bos_taurus
ENSMUSG00000020180Snrpd39461.600WBGene00004914snr-16869.565Caenorhabditis_elegans
ENSMUSG00000020180Snrpd3100100.000ENSCJAG00000009630SNRPD3100100.000Callithrix_jacchus
ENSMUSG00000020180Snrpd3100100.000ENSCAFG00000013864-100100.000Canis_familiaris
ENSMUSG00000020180Snrpd310099.206ENSCAFG00000017258-10099.206Canis_familiaris
ENSMUSG00000020180Snrpd3100100.000ENSCAFG00020007165-100100.000Canis_lupus_dingo
ENSMUSG00000020180Snrpd37992.424ENSCAFG00020024699-58100.000Canis_lupus_dingo
ENSMUSG00000020180Snrpd3100100.000ENSCHIG00000000057SNRPD3100100.000Capra_hircus
ENSMUSG00000020180Snrpd3100100.000ENSTSYG00000007649SNRPD3100100.000Carlito_syrichta
ENSMUSG00000020180Snrpd3100100.000ENSCAPG00000016432-100100.000Cavia_aperea
ENSMUSG00000020180Snrpd3100100.000ENSCPOG00000033102-100100.000Cavia_porcellus
ENSMUSG00000020180Snrpd3100100.000ENSCCAG00000035006SNRPD3100100.000Cebus_capucinus
ENSMUSG00000020180Snrpd3100100.000ENSCATG00000038878SNRPD3100100.000Cercocebus_atys
ENSMUSG00000020180Snrpd3100100.000ENSCLAG00000011403SNRPD3100100.000Chinchilla_lanigera
ENSMUSG00000020180Snrpd3100100.000ENSCSAG00000010694SNRPD3100100.000Chlorocebus_sabaeus
ENSMUSG00000020180Snrpd3100100.000ENSCPBG00000002065SNRPD3100100.000Chrysemys_picta_bellii
ENSMUSG00000020180Snrpd38579.439ENSCSAVG00000004708-8079.439Ciona_savignyi
ENSMUSG00000020180Snrpd3100100.000ENSCANG00000032106SNRPD3100100.000Colobus_angolensis_palliatus
ENSMUSG00000020180Snrpd3100100.000ENSCGRG00001021990Snrpd3100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000020180Snrpd3100100.000ENSCGRG00000004280Snrpd3100100.000Cricetulus_griseus_crigri
ENSMUSG00000020180Snrpd310097.638ENSCVAG00000001276snrpd3l10097.638Cyprinodon_variegatus
ENSMUSG00000020180Snrpd310096.094ENSDARG00000076283snrpd3l10096.094Danio_rerio
ENSMUSG00000020180Snrpd310090.551ENSDARG00000013800snrpd310091.339Danio_rerio
ENSMUSG00000020180Snrpd3100100.000ENSDNOG00000047424-100100.000Dasypus_novemcinctus
ENSMUSG00000020180Snrpd39777.869ENSDNOG00000042638-10077.869Dasypus_novemcinctus
ENSMUSG00000020180Snrpd310089.922ENSDNOG00000018004-10089.922Dasypus_novemcinctus
ENSMUSG00000020180Snrpd310074.603ENSDORG00000027169-10074.603Dipodomys_ordii
ENSMUSG00000020180Snrpd38791.818ENSDORG00000002800-10091.818Dipodomys_ordii
ENSMUSG00000020180Snrpd310084.921ENSDORG00000027706-10084.921Dipodomys_ordii
ENSMUSG00000020180Snrpd38483.962FBgn0023167SmD37183.178Drosophila_melanogaster
ENSMUSG00000020180Snrpd3100100.000ENSEASG00005000273SNRPD3100100.000Equus_asinus_asinus
ENSMUSG00000020180Snrpd3100100.000ENSECAG00000023316SNRPD3100100.000Equus_caballus
ENSMUSG00000020180Snrpd310098.413ENSEEUG00000015518SNRPD310098.413Erinaceus_europaeus
ENSMUSG00000020180Snrpd310096.850ENSELUG00000001854snrpd310096.850Esox_lucius
ENSMUSG00000020180Snrpd310098.425ENSELUG00000010092snrpd3l10098.425Esox_lucius
ENSMUSG00000020180Snrpd3100100.000ENSFCAG00000001512SNRPD3100100.000Felis_catus
ENSMUSG00000020180Snrpd3100100.000ENSFALG00000007303SNRPD3100100.000Ficedula_albicollis
ENSMUSG00000020180Snrpd3100100.000ENSFDAG00000010772SNRPD3100100.000Fukomys_damarensis
ENSMUSG00000020180Snrpd310098.425ENSFHEG00000010754snrpd3l10098.425Fundulus_heteroclitus
ENSMUSG00000020180Snrpd310098.438ENSGMOG00000008469snrpd3l10098.438Gadus_morhua
ENSMUSG00000020180Snrpd3100100.000ENSGALG00000006596SNRPD3100100.000Gallus_gallus
ENSMUSG00000020180Snrpd384100.000ENSGAFG00000006661snrpd3l82100.000Gambusia_affinis
ENSMUSG00000020180Snrpd310098.438ENSGACG00000017533snrpd3l10098.438Gasterosteus_aculeatus
ENSMUSG00000020180Snrpd3100100.000ENSGAGG00000023325SNRPD3100100.000Gopherus_agassizii
ENSMUSG00000020180Snrpd3100100.000ENSGGOG00000015640SNRPD3100100.000Gorilla_gorilla
ENSMUSG00000020180Snrpd310099.213ENSHBUG00000001332snrpd3l10099.213Haplochromis_burtoni
ENSMUSG00000020180Snrpd39996.800ENSHGLG00000009844-9996.800Heterocephalus_glaber_female
ENSMUSG00000020180Snrpd3100100.000ENSHGLG00000016496SNRPD3100100.000Heterocephalus_glaber_female
ENSMUSG00000020180Snrpd3100100.000ENSHGLG00100019304SNRPD3100100.000Heterocephalus_glaber_male
ENSMUSG00000020180Snrpd39996.800ENSHGLG00100011326-9996.800Heterocephalus_glaber_male
ENSMUSG00000020180Snrpd310098.425ENSHCOG00000014396snrpd3l10098.425Hippocampus_comes
ENSMUSG00000020180Snrpd310096.094ENSIPUG00000003083snrpd310096.094Ictalurus_punctatus
ENSMUSG00000020180Snrpd3100100.000ENSSTOG00000025674SNRPD3100100.000Ictidomys_tridecemlineatus
ENSMUSG00000020180Snrpd3100100.000ENSJJAG00000013303Snrpd3100100.000Jaculus_jaculus
ENSMUSG00000020180Snrpd310098.425ENSKMAG00000012493snrpd3l10098.425Kryptolebias_marmoratus
ENSMUSG00000020180Snrpd310099.213ENSLBEG00000003202snrpd3l10099.213Labrus_bergylta
ENSMUSG00000020180Snrpd310099.206ENSLACG00000015192SNRPD310099.206Latimeria_chalumnae
ENSMUSG00000020180Snrpd310099.213ENSLOCG00000006978snrpd310099.213Lepisosteus_oculatus
ENSMUSG00000020180Snrpd3100100.000ENSLAFG00000028180SNRPD3100100.000Loxodonta_africana
ENSMUSG00000020180Snrpd3100100.000ENSMFAG00000033628SNRPD3100100.000Macaca_fascicularis
ENSMUSG00000020180Snrpd3100100.000ENSMMUG00000000264SNRPD3100100.000Macaca_mulatta
ENSMUSG00000020180Snrpd3100100.000ENSMNEG00000020857SNRPD3100100.000Macaca_nemestrina
ENSMUSG00000020180Snrpd3100100.000ENSMLEG00000037548SNRPD3100100.000Mandrillus_leucophaeus
ENSMUSG00000020180Snrpd310099.213ENSMZEG00005017664snrpd3l10099.213Maylandia_zebra
ENSMUSG00000020180Snrpd3100100.000ENSMAUG00000021393Snrpd3100100.000Mesocricetus_auratus
ENSMUSG00000020180Snrpd3100100.000ENSMICG00000034782SNRPD3100100.000Microcebus_murinus
ENSMUSG00000020180Snrpd3100100.000ENSMOCG00000009361Snrpd3100100.000Microtus_ochrogaster
ENSMUSG00000020180Snrpd39790.164ENSMMOG00000020985snrpd3l7390.164Mola_mola
ENSMUSG00000020180Snrpd3100100.000ENSMODG00000004024SNRPD3100100.000Monodelphis_domestica
ENSMUSG00000020180Snrpd310099.213ENSMALG00000013334snrpd3l10099.213Monopterus_albus
ENSMUSG00000020180Snrpd3100100.000MGP_CAROLIEiJ_G0015441Snrpd3100100.000Mus_caroli
ENSMUSG00000020180Snrpd3100100.000MGP_PahariEiJ_G0030857Snrpd3100100.000Mus_pahari
ENSMUSG00000020180Snrpd3100100.000MGP_SPRETEiJ_G0016254Snrpd3100100.000Mus_spretus
ENSMUSG00000020180Snrpd3100100.000ENSMPUG00000002889SNRPD3100100.000Mustela_putorius_furo
ENSMUSG00000020180Snrpd3100100.000ENSMLUG00000009838SNRPD3100100.000Myotis_lucifugus
ENSMUSG00000020180Snrpd3100100.000ENSNGAG00000010328Snrpd3100100.000Nannospalax_galili
ENSMUSG00000020180Snrpd310099.213ENSNBRG00000020307snrpd3l10099.213Neolamprologus_brichardi
ENSMUSG00000020180Snrpd3100100.000ENSNLEG00000035757SNRPD3100100.000Nomascus_leucogenys
ENSMUSG00000020180Snrpd3100100.000ENSMEUG00000003772SNRPD3100100.000Notamacropus_eugenii
ENSMUSG00000020180Snrpd3100100.000ENSOPRG00000005763SNRPD3100100.000Ochotona_princeps
ENSMUSG00000020180Snrpd3100100.000ENSODEG00000008064-100100.000Octodon_degus
ENSMUSG00000020180Snrpd310096.825ENSODEG00000020162-10096.825Octodon_degus
ENSMUSG00000020180Snrpd310099.206ENSODEG00000019354-10099.206Octodon_degus
ENSMUSG00000020180Snrpd310099.213ENSONIG00000003828snrpd3l10099.213Oreochromis_niloticus
ENSMUSG00000020180Snrpd3100100.000ENSOANG00000002463SNRPD3100100.000Ornithorhynchus_anatinus
ENSMUSG00000020180Snrpd3100100.000ENSOCUG00000004845SNRPD3100100.000Oryctolagus_cuniculus
ENSMUSG00000020180Snrpd310099.213ENSORLG00000010586snrpd3l10099.213Oryzias_latipes
ENSMUSG00000020180Snrpd310099.213ENSORLG00020011769snrpd3l10099.213Oryzias_latipes_hni
ENSMUSG00000020180Snrpd310099.213ENSORLG00015022940snrpd3l10099.213Oryzias_latipes_hsok
ENSMUSG00000020180Snrpd310098.425ENSOMEG00000022734snrpd3l10098.425Oryzias_melastigma
ENSMUSG00000020180Snrpd3100100.000ENSOGAG00000012708SNRPD3100100.000Otolemur_garnettii
ENSMUSG00000020180Snrpd3100100.000ENSOARG00000013984SNRPD3100100.000Ovis_aries
ENSMUSG00000020180Snrpd3100100.000ENSPPAG00000039191SNRPD3100100.000Pan_paniscus
ENSMUSG00000020180Snrpd3100100.000ENSPPRG00000001470SNRPD3100100.000Panthera_pardus
ENSMUSG00000020180Snrpd3100100.000ENSPTIG00000016610SNRPD3100100.000Panthera_tigris_altaica
ENSMUSG00000020180Snrpd3100100.000ENSPTRG00000014176SNRPD3100100.000Pan_troglodytes
ENSMUSG00000020180Snrpd3100100.000ENSPANG00000009279SNRPD3100100.000Papio_anubis
ENSMUSG00000020180Snrpd310096.850ENSPKIG00000006412snrpd3l10096.850Paramormyrops_kingsleyae
ENSMUSG00000020180Snrpd310098.413ENSPSIG00000010022-10098.413Pelodiscus_sinensis
ENSMUSG00000020180Snrpd39895.968ENSPMGG00000004486snrpd3l10095.968Periophthalmus_magnuspinnatus
ENSMUSG00000020180Snrpd3100100.000ENSPCIG00000010910SNRPD384100.000Phascolarctos_cinereus
ENSMUSG00000020180Snrpd310098.425ENSPFOG00000019673snrpd3l10098.425Poecilia_formosa
ENSMUSG00000020180Snrpd310098.425ENSPLAG00000023249snrpd3l10098.425Poecilia_latipinna
ENSMUSG00000020180Snrpd310098.425ENSPMEG00000008482snrpd3l10098.425Poecilia_mexicana
ENSMUSG00000020180Snrpd384100.000ENSPREG00000007532snrpd3l87100.000Poecilia_reticulata
ENSMUSG00000020180Snrpd3100100.000ENSPPYG00000011648SNRPD3100100.000Pongo_abelii
ENSMUSG00000020180Snrpd3100100.000ENSPCAG00000002065SNRPD3100100.000Procavia_capensis
ENSMUSG00000020180Snrpd3100100.000ENSPCOG00000011842SNRPD3100100.000Propithecus_coquereli
ENSMUSG00000020180Snrpd310099.206ENSPVAG00000011405SNRPD310099.206Pteropus_vampyrus
ENSMUSG00000020180Snrpd310099.213ENSPNYG00000013344snrpd3l10099.213Pundamilia_nyererei
ENSMUSG00000020180Snrpd310095.276ENSPNAG00000010547snrpd310095.276Pygocentrus_nattereri
ENSMUSG00000020180Snrpd310094.531ENSPNAG00000008683snrpd3l10094.531Pygocentrus_nattereri
ENSMUSG00000020180Snrpd3100100.000ENSRNOG00000050410Snrpd3100100.000Rattus_norvegicus
ENSMUSG00000020180Snrpd3100100.000ENSRBIG00000029017SNRPD3100100.000Rhinopithecus_bieti
ENSMUSG00000020180Snrpd3100100.000ENSRROG00000031152SNRPD3100100.000Rhinopithecus_roxellana
ENSMUSG00000020180Snrpd38243.478YLR147CSMD39247.368Saccharomyces_cerevisiae
ENSMUSG00000020180Snrpd310096.850ENSSFOG00015014180snrpd3l10096.850Scleropages_formosus
ENSMUSG00000020180Snrpd310096.850ENSSFOG00015007002snrpd3l10096.850Scleropages_formosus
ENSMUSG00000020180Snrpd310099.213ENSSMAG00000019307snrpd3l10099.213Scophthalmus_maximus
ENSMUSG00000020180Snrpd310099.213ENSSDUG00000006870snrpd3l10099.213Seriola_dumerili
ENSMUSG00000020180Snrpd310099.213ENSSLDG00000022664snrpd3l10099.213Seriola_lalandi_dorsalis
ENSMUSG00000020180Snrpd3100100.000ENSSARG00000002357SNRPD3100100.000Sorex_araneus
ENSMUSG00000020180Snrpd310099.206ENSSPUG00000014285SNRPD310099.206Sphenodon_punctatus
ENSMUSG00000020180Snrpd3100100.000ENSSSCG00000010058SNRPD3100100.000Sus_scrofa
ENSMUSG00000020180Snrpd3100100.000ENSTGUG00000010079SNRPD3100100.000Taeniopygia_guttata
ENSMUSG00000020180Snrpd384100.000ENSTRUG00000023976snrpd3l90100.000Takifugu_rubripes
ENSMUSG00000020180Snrpd310098.425ENSTNIG00000005323snrpd3l10098.425Tetraodon_nigroviridis
ENSMUSG00000020180Snrpd3100100.000ENSTBEG00000014334SNRPD3100100.000Tupaia_belangeri
ENSMUSG00000020180Snrpd3100100.000ENSTTRG00000006022SNRPD3100100.000Tursiops_truncatus
ENSMUSG00000020180Snrpd3100100.000ENSUAMG00000010767SNRPD3100100.000Ursus_americanus
ENSMUSG00000020180Snrpd3100100.000ENSUMAG00000001670SNRPD3100100.000Ursus_maritimus
ENSMUSG00000020180Snrpd3100100.000ENSVPAG00000000241SNRPD3100100.000Vicugna_pacos
ENSMUSG00000020180Snrpd384100.000ENSVVUG00000019340SNRPD353100.000Vulpes_vulpes
ENSMUSG00000020180Snrpd310083.594ENSXETG00000024918snrpd310083.594Xenopus_tropicalis
ENSMUSG00000020180Snrpd310098.425ENSXCOG00000004795snrpd3l10098.425Xiphophorus_couchianus
ENSMUSG00000020180Snrpd310098.425ENSXMAG00000001133snrpd3l10098.425Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000243commitment complex21873635.IBAComponent
GO:0000387spliceosomal snRNP assembly21873635.IBAProcess
GO:0000387spliceosomal snRNP assembly-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0005634nucleus15369763.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005682U5 snRNP21873635.IBAComponent
GO:0005683U7 snRNP-ISOComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005687U4 snRNP21873635.IBAComponent
GO:0005687U4 snRNP-ISOComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0005697telomerase holoenzyme complex-ISOComponent
GO:0005737cytoplasm15369763.IDAComponent
GO:0005829cytosol-ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0006479protein methylation18495660.ISOProcess
GO:0008380RNA splicing-IEAProcess
GO:0016604nuclear body-ISOComponent
GO:0019899enzyme binding-ISOFunction
GO:0034709methylosome-ISOComponent
GO:0034715pICln-Sm protein complex21873635.IBAComponent
GO:0034715pICln-Sm protein complex-ISOComponent
GO:0034719SMN-Sm protein complex21873635.IBAComponent
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0070034telomerase RNA binding-ISOFunction
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071208histone pre-mRNA DCP binding19470752.IDAFunction
GO:0071209U7 snRNA binding-ISOFunction
GO:1990446U1 snRNP binding-ISOFunction

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