EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020211 (Gene tree)
Gene ID: 20222
Gene Symbol: Sf3a2
Alias: 66kDa|PRP11|SFA66|Sap62
Full Name: splicing factor 3a%2C subunit 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 6727 bases
Position: chr10:80798198-80804924
Accession: 104912
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000114164	zf-met	PF12874.7	1.1e-06	1	1
ENSMUSP00000117160	zf-met	PF12874.7	2.1e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148665	-	2213	XM_006513394	ENSMUSP00000117160	485 (aa)	XP_006513457	G3UVU2
ENSMUST00000139461	-	727	-	-	- (aa)	-	-
ENSMUST00000147440	-	373	-	ENSMUSP00000116478	67 (aa)	-	D3Z5A6
ENSMUST00000151928	-	781	XM_006513397	ENSMUSP00000114164	194 (aa)	XP_006513460	D3YW09

Gene Model

Click here to download ENSMUSG00000020211's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020211's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020211	Sf3a2	94	99.451	ENSG00000104897	SF3A2	100	99.259	Homo_sapiens
ENSMUSG00000020211	Sf3a2	94	95.604	ENSAPOG00000003916	sf3a2	73	95.370	Acanthochromis_polyacanthus
ENSMUSG00000020211	Sf3a2	94	100.000	ENSAMEG00000005469	SF3A2	52	100.000	Ailuropoda_melanoleuca
ENSMUSG00000020211	Sf3a2	94	96.154	ENSACIG00000018153	sf3a2	73	95.370	Amphilophus_citrinellus
ENSMUSG00000020211	Sf3a2	94	95.604	ENSAOCG00000015960	sf3a2	73	95.370	Amphiprion_ocellaris
ENSMUSG00000020211	Sf3a2	94	95.604	ENSAPEG00000012336	sf3a2	73	95.370	Amphiprion_percula
ENSMUSG00000020211	Sf3a2	94	95.604	ENSATEG00000015449	sf3a2	76	93.333	Anabas_testudineus
ENSMUSG00000020211	Sf3a2	99	95.855	ENSANAG00000034031	-	92	95.855	Aotus_nancymaae
ENSMUSG00000020211	Sf3a2	94	96.703	ENSACLG00000002356	sf3a2	77	93.778	Astatotilapia_calliptera
ENSMUSG00000020211	Sf3a2	94	96.703	ENSAMXG00000032428	sf3a2	74	94.144	Astyanax_mexicanus
ENSMUSG00000020211	Sf3a2	94	100.000	ENSBTAG00000025452	SF3A2	50	100.000	Bos_taurus
ENSMUSG00000020211	Sf3a2	94	80.769	WBGene00008683	repo-1	99	77.376	Caenorhabditis_elegans
ENSMUSG00000020211	Sf3a2	94	99.451	ENSCJAG00000013206	-	52	99.582	Callithrix_jacchus
ENSMUSG00000020211	Sf3a2	94	100.000	ENSCAFG00000019414	SF3A2	94	80.467	Canis_familiaris
ENSMUSG00000020211	Sf3a2	94	100.000	ENSCAFG00020018153	SF3A2	50	100.000	Canis_lupus_dingo
ENSMUSG00000020211	Sf3a2	94	100.000	ENSCHIG00000018323	SF3A2	50	100.000	Capra_hircus
ENSMUSG00000020211	Sf3a2	100	95.876	ENSCAPG00000003402	-	95	95.876	Cavia_aperea
ENSMUSG00000020211	Sf3a2	94	100.000	ENSCPOG00000032868	SF3A2	53	100.000	Cavia_porcellus
ENSMUSG00000020211	Sf3a2	99	96.373	ENSCCAG00000009812	SF3A2	91	96.373	Cebus_capucinus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSCATG00000038453	SF3A2	52	99.582	Cercocebus_atys
ENSMUSG00000020211	Sf3a2	94	100.000	ENSCLAG00000008987	SF3A2	100	90.535	Chinchilla_lanigera
ENSMUSG00000020211	Sf3a2	94	99.451	ENSCSAG00000011717	SF3A2	51	99.582	Chlorocebus_sabaeus
ENSMUSG00000020211	Sf3a2	94	98.901	ENSCPBG00000018569	SF3A2	72	97.788	Chrysemys_picta_bellii
ENSMUSG00000020211	Sf3a2	94	86.264	ENSCING00000003319	zf(matrin)-2	63	84.091	Ciona_intestinalis
ENSMUSG00000020211	Sf3a2	94	84.615	ENSCSAVG00000007862	-	59	83.636	Ciona_savignyi
ENSMUSG00000020211	Sf3a2	94	99.451	ENSCANG00000024451	SF3A2	52	99.582	Colobus_angolensis_palliatus
ENSMUSG00000020211	Sf3a2	100	97.732	ENSCGRG00001001802	Sf3a2	100	97.732	Cricetulus_griseus_chok1gshd
ENSMUSG00000020211	Sf3a2	100	98.454	ENSCGRG00000011089	Sf3a2	100	98.454	Cricetulus_griseus_crigri
ENSMUSG00000020211	Sf3a2	94	96.154	ENSCSEG00000014308	sf3a2	79	93.304	Cynoglossus_semilaevis
ENSMUSG00000020211	Sf3a2	94	96.703	ENSCVAG00000021349	sf3a2	73	95.833	Cyprinodon_variegatus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSDARG00000021107	sf3a2	81	93.750	Danio_rerio
ENSMUSG00000020211	Sf3a2	94	100.000	ENSDORG00000014445	Sf3a2	52	99.582	Dipodomys_ordii
ENSMUSG00000020211	Sf3a2	94	85.246	FBgn0036314	Sf3a2	86	82.379	Drosophila_melanogaster
ENSMUSG00000020211	Sf3a2	70	100.000	ENSETEG00000016949	-	58	100.000	Echinops_telfairi
ENSMUSG00000020211	Sf3a2	94	100.000	ENSEASG00005021972	SF3A2	52	100.000	Equus_asinus_asinus
ENSMUSG00000020211	Sf3a2	94	97.253	ENSELUG00000008471	sf3a2	74	94.222	Esox_lucius
ENSMUSG00000020211	Sf3a2	94	99.451	ENSFCAG00000030476	SF3A2	55	99.582	Felis_catus
ENSMUSG00000020211	Sf3a2	79	98.039	ENSFALG00000013785	-	100	70.757	Ficedula_albicollis
ENSMUSG00000020211	Sf3a2	100	95.876	ENSFDAG00000020911	-	99	95.876	Fukomys_damarensis
ENSMUSG00000020211	Sf3a2	94	96.154	ENSFHEG00000002392	sf3a2	74	95.370	Fundulus_heteroclitus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSGMOG00000012186	sf3a2	72	95.370	Gadus_morhua
ENSMUSG00000020211	Sf3a2	94	97.802	ENSGALG00000021679	SF3A2	72	97.345	Gallus_gallus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSGAFG00000008478	sf3a2	73	95.370	Gambusia_affinis
ENSMUSG00000020211	Sf3a2	94	96.703	ENSGACG00000015255	sf3a2	74	96.296	Gasterosteus_aculeatus
ENSMUSG00000020211	Sf3a2	70	98.529	ENSGAGG00000008500	SF3A2	67	97.222	Gopherus_agassizii
ENSMUSG00000020211	Sf3a2	94	99.451	ENSGGOG00000006613	SF3A2	52	99.582	Gorilla_gorilla
ENSMUSG00000020211	Sf3a2	94	96.703	ENSHBUG00000021796	sf3a2	77	93.778	Haplochromis_burtoni
ENSMUSG00000020211	Sf3a2	94	100.000	ENSHGLG00000015102	SF3A2	88	100.000	Heterocephalus_glaber_female
ENSMUSG00000020211	Sf3a2	94	100.000	ENSHGLG00100000418	SF3A2	88	100.000	Heterocephalus_glaber_male
ENSMUSG00000020211	Sf3a2	94	96.154	ENSHCOG00000001223	sf3a2	77	93.750	Hippocampus_comes
ENSMUSG00000020211	Sf3a2	94	96.154	ENSIPUG00000019071	sf3a2	72	95.370	Ictalurus_punctatus
ENSMUSG00000020211	Sf3a2	100	94.444	ENSSTOG00000007495	SF3A2	100	94.650	Ictidomys_tridecemlineatus
ENSMUSG00000020211	Sf3a2	100	97.423	ENSJJAG00000010635	Sf3a2	100	97.423	Jaculus_jaculus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSKMAG00000006295	sf3a2	73	95.370	Kryptolebias_marmoratus
ENSMUSG00000020211	Sf3a2	94	96.703	ENSLBEG00000000677	sf3a2	76	93.778	Labrus_bergylta
ENSMUSG00000020211	Sf3a2	94	96.703	ENSLACG00000008744	SF3A2	72	95.575	Latimeria_chalumnae
ENSMUSG00000020211	Sf3a2	94	97.253	ENSLOCG00000005835	sf3a2	70	96.296	Lepisosteus_oculatus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSMFAG00000002638	SF3A2	52	99.582	Macaca_fascicularis
ENSMUSG00000020211	Sf3a2	94	99.451	ENSMMUG00000010111	SF3A2	52	99.582	Macaca_mulatta
ENSMUSG00000020211	Sf3a2	94	99.451	ENSMNEG00000036916	SF3A2	51	99.582	Macaca_nemestrina
ENSMUSG00000020211	Sf3a2	94	95.604	ENSMAMG00000009881	sf3a2	76	93.304	Mastacembelus_armatus
ENSMUSG00000020211	Sf3a2	94	96.703	ENSMZEG00005025609	sf3a2	77	93.778	Maylandia_zebra
ENSMUSG00000020211	Sf3a2	94	97.802	ENSMGAG00000001950	SF3A2	72	97.345	Meleagris_gallopavo
ENSMUSG00000020211	Sf3a2	100	98.454	ENSMAUG00000005644	-	100	98.454	Mesocricetus_auratus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSMICG00000015443	SF3A2	52	99.582	Microcebus_murinus
ENSMUSG00000020211	Sf3a2	100	95.464	ENSMOCG00000007216	Sf3a2	100	95.670	Microtus_ochrogaster
ENSMUSG00000020211	Sf3a2	94	84.699	ENSMMOG00000010657	sf3a2	85	81.250	Mola_mola
ENSMUSG00000020211	Sf3a2	94	95.604	ENSMALG00000020442	sf3a2	77	91.667	Monopterus_albus
ENSMUSG00000020211	Sf3a2	100	100.000	MGP_CAROLIEiJ_G0015602	-	100	100.000	Mus_caroli
ENSMUSG00000020211	Sf3a2	100	98.969	MGP_PahariEiJ_G0031015	-	100	98.969	Mus_pahari
ENSMUSG00000020211	Sf3a2	100	100.000	MGP_SPRETEiJ_G0016420	-	100	100.000	Mus_spretus
ENSMUSG00000020211	Sf3a2	94	98.901	ENSMPUG00000006956	SF3A2	52	99.163	Mustela_putorius_furo
ENSMUSG00000020211	Sf3a2	94	99.451	ENSMLUG00000004426	-	54	99.582	Myotis_lucifugus
ENSMUSG00000020211	Sf3a2	100	96.392	ENSNGAG00000023309	-	100	96.392	Nannospalax_galili
ENSMUSG00000020211	Sf3a2	94	96.703	ENSNBRG00000019872	sf3a2	77	93.778	Neolamprologus_brichardi
ENSMUSG00000020211	Sf3a2	94	100.000	ENSODEG00000013722	-	100	97.861	Octodon_degus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSONIG00000010198	sf3a2	77	93.333	Oreochromis_niloticus
ENSMUSG00000020211	Sf3a2	94	98.901	ENSOANG00000013649	-	98	99.024	Ornithorhynchus_anatinus
ENSMUSG00000020211	Sf3a2	94	95.055	ENSORLG00000015301	sf3a2	74	94.444	Oryzias_latipes
ENSMUSG00000020211	Sf3a2	94	95.055	ENSORLG00020017235	sf3a2	74	94.444	Oryzias_latipes_hni
ENSMUSG00000020211	Sf3a2	94	95.055	ENSORLG00015017116	sf3a2	74	94.444	Oryzias_latipes_hsok
ENSMUSG00000020211	Sf3a2	94	95.055	ENSOMEG00000020860	sf3a2	63	95.055	Oryzias_melastigma
ENSMUSG00000020211	Sf3a2	94	99.451	ENSOGAG00000033389	SF3A2	52	99.582	Otolemur_garnettii
ENSMUSG00000020211	Sf3a2	94	100.000	ENSOARG00000014357	SF3A2	86	100.000	Ovis_aries
ENSMUSG00000020211	Sf3a2	100	75.829	ENSPPAG00000037864	-	50	84.937	Pan_paniscus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSPPRG00000007798	SF3A2	51	99.582	Panthera_pardus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSPTRG00000010227	SF3A2	93	64.410	Pan_troglodytes
ENSMUSG00000020211	Sf3a2	94	99.451	ENSPANG00000007949	SF3A2	52	99.582	Papio_anubis
ENSMUSG00000020211	Sf3a2	94	96.703	ENSPKIG00000009487	sf3a2	71	94.222	Paramormyrops_kingsleyae
ENSMUSG00000020211	Sf3a2	94	98.901	ENSPSIG00000010839	SF3A2	72	96.491	Pelodiscus_sinensis
ENSMUSG00000020211	Sf3a2	94	95.604	ENSPMGG00000017249	sf3a2	91	84.746	Periophthalmus_magnuspinnatus
ENSMUSG00000020211	Sf3a2	94	100.000	ENSPEMG00000021288	Sf3a2	100	94.639	Peromyscus_maniculatus_bairdii
ENSMUSG00000020211	Sf3a2	94	96.154	ENSPFOG00000015945	sf3a2	73	95.370	Poecilia_formosa
ENSMUSG00000020211	Sf3a2	94	96.154	ENSPLAG00000010052	sf3a2	73	95.370	Poecilia_latipinna
ENSMUSG00000020211	Sf3a2	94	96.154	ENSPMEG00000000184	sf3a2	73	95.370	Poecilia_mexicana
ENSMUSG00000020211	Sf3a2	94	96.154	ENSPREG00000017808	sf3a2	73	95.370	Poecilia_reticulata
ENSMUSG00000020211	Sf3a2	94	99.451	ENSPPYG00000009342	SF3A2	52	99.582	Pongo_abelii
ENSMUSG00000020211	Sf3a2	94	99.451	ENSPCOG00000020295	SF3A2	53	99.582	Propithecus_coquereli
ENSMUSG00000020211	Sf3a2	94	96.703	ENSPNYG00000006928	sf3a2	77	93.778	Pundamilia_nyererei
ENSMUSG00000020211	Sf3a2	94	96.703	ENSPNAG00000027582	sf3a2	72	95.833	Pygocentrus_nattereri
ENSMUSG00000020211	Sf3a2	100	96.495	ENSRNOG00000019349	Sf3a2	100	96.495	Rattus_norvegicus
ENSMUSG00000020211	Sf3a2	94	99.451	ENSRBIG00000026709	SF3A2	62	99.582	Rhinopithecus_bieti
ENSMUSG00000020211	Sf3a2	94	99.451	ENSRROG00000034440	SF3A2	51	99.582	Rhinopithecus_roxellana
ENSMUSG00000020211	Sf3a2	86	98.795	ENSSBOG00000026071	SF3A2	93	79.694	Saimiri_boliviensis_boliviensis
ENSMUSG00000020211	Sf3a2	81	85.443	ENSSHAG00000011646	-	77	88.837	Sarcophilus_harrisii
ENSMUSG00000020211	Sf3a2	94	99.451	ENSSHAG00000011677	-	100	98.785	Sarcophilus_harrisii
ENSMUSG00000020211	Sf3a2	94	96.703	ENSSFOG00015010920	sf3a2	64	92.920	Scleropages_formosus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSSMAG00000002629	sf3a2	75	95.833	Scophthalmus_maximus
ENSMUSG00000020211	Sf3a2	94	96.154	ENSSDUG00000015810	sf3a2	77	93.333	Seriola_dumerili
ENSMUSG00000020211	Sf3a2	94	96.154	ENSSLDG00000010874	sf3a2	78	92.544	Seriola_lalandi_dorsalis
ENSMUSG00000020211	Sf3a2	94	95.604	ENSSPAG00000004960	sf3a2	77	92.105	Stegastes_partitus
ENSMUSG00000020211	Sf3a2	94	98.901	ENSSSCG00000039757	SF3A2	52	99.163	Sus_scrofa
ENSMUSG00000020211	Sf3a2	94	97.802	ENSTGUG00000000305	SF3A2	100	98.049	Taeniopygia_guttata
ENSMUSG00000020211	Sf3a2	94	95.604	ENSTRUG00000009045	sf3a2	75	95.370	Takifugu_rubripes
ENSMUSG00000020211	Sf3a2	94	95.055	ENSTNIG00000015318	sf3a2	75	94.907	Tetraodon_nigroviridis
ENSMUSG00000020211	Sf3a2	94	79.670	ENSTTRG00000010177	-	52	84.519	Tursiops_truncatus
ENSMUSG00000020211	Sf3a2	94	100.000	ENSVVUG00000002578	SF3A2	50	100.000	Vulpes_vulpes
ENSMUSG00000020211	Sf3a2	94	97.802	ENSXETG00000024943	sf3a2	54	96.429	Xenopus_tropicalis
ENSMUSG00000020211	Sf3a2	94	96.154	ENSXCOG00000008222	sf3a2	74	95.370	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	21873635.	IBA	Process
GO:0000375	RNA splicing, via transesterification reactions	11602354.	TAS	Process
GO:0000398	mRNA splicing, via spliceosome	11602354.	TAS	Process
GO:0005515	protein binding	19324890.	IPI	Function
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component