EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020315 (Gene tree)
Gene ID: 20742
Gene Symbol: Sptbn1
Alias: 9930031C03Rik|Spnb-2|Spnb2|beta fodrin|brain spectrin|elf1|elf3|non-erythrocytic|spectrin G
Full Name: spectrin beta%2C non-erythrocytic 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 168781
Position: chr11: 30099395-30268175
Accession: 98388
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127209	-	744	-	-	- (aa)	-	-
ENSMUST00000133466	-	3084	-	-	- (aa)	-	-
ENSMUST00000006629	-	8461	XM_006514599	ENSMUSP00000006629	2363 (aa)	XP_006514662	Q62261
ENSMUST00000145315	-	2956	-	-	- (aa)	-	-
ENSMUST00000124231	-	6524	-	ENSMUSP00000114841	2092 (aa)	-	A0A0A0MQG2
ENSMUST00000149117	-	3342	-	-	- (aa)	-	-
ENSMUST00000102838	-	9107	-	ENSMUSP00000099902	2154 (aa)	-	Q62261
ENSMUST00000011877	-	8238	XM_006514600	ENSMUSP00000011877	2363 (aa)	XP_006514663	Q62261

Gene Model

Click here to download ENSMUSG00000020315's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020315's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020315	Sptbn1	100	98.948	ENSG00000115306	SPTBN1	100	99.565	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000281	mitotic cytokinesis	-	ISO	Process
GO:0003779	actin binding	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	-	ISO	Function
GO:0005515	protein binding	12522145.12543979.15262991.	IPI	Function
GO:0005516	calmodulin binding	-	IEA	Function
GO:0005543	phospholipid binding	-	IEA	Function
GO:0005634	nucleus	12543979.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	12543979.	IDA	Component
GO:0007009	plasma membrane organization	-	ISO	Process
GO:0007182	common-partner SMAD protein phosphorylation	12543979.	IDA	Process
GO:0008091	spectrin	-	IEA	Component
GO:0014069	postsynaptic density	17114649.	IDA	Component
GO:0016020	membrane	18723693.	IDA	Component
GO:0030506	ankyrin binding	-	ISO	Function
GO:0030673	axolemma	21966409.	IDA	Component
GO:0030863	cortical cytoskeleton	18723693.	IDA	Component
GO:0031430	M band	15262991.	IDA	Component
GO:0032437	cuticular plate	18796539.	IDA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0043001	Golgi to plasma membrane protein transport	-	ISO	Process
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0051020	GTPase binding	-	ISO	Function
GO:0051693	actin filament capping	-	IEA	Process
GO:0060390	regulation of SMAD protein signal transduction	12543979.	IDA	Process
GO:0071709	membrane assembly	-	ISO	Process
GO:0072659	protein localization to plasma membrane	17620337.	IMP	Process
GO:0072659	protein localization to plasma membrane	-	ISO	Process
GO:0098794	postsynapse	-	ISO	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:1900042	positive regulation of interleukin-2 secretion	-	ISO	Process
GO:1903076	regulation of protein localization to plasma membrane	-	ISO	Process
GO:1903078	positive regulation of protein localization to plasma membrane	-	ISO	Process