EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020362 (Gene tree)
Gene ID: 104625
Gene Symbol: Cnot6
Alias: A230103N10Rik
Full Name: CCR4-NOT transcription complex%2C subunit 6
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 41221 bases
Position: chr11:49671503-49712723
Accession: 2144529
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020624	Exo_endo_phos	PF03372.23	8.9e-22	1	1
ENSMUSP00000121239	Exo_endo_phos	PF03372.23	9.2e-22	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145353	-	5736	XM_006531940	ENSMUSP00000121239	557 (aa)	XP_006532003	Q8K3P5
ENSMUST00000109183	-	2241	-	-	- (aa)	-	-
ENSMUST00000145424	-	600	-	-	- (aa)	-	-
ENSMUST00000151090	-	830	-	-	- (aa)	-	-
ENSMUST00000020624	-	2498	XM_017314215	ENSMUSP00000020624	552 (aa)	-	Q8K3P5

Gene Model

Click here to download ENSMUSG00000020362's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020362's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020362	Cnot6	100	77.355	ENSMUSG00000034724	Cnot6l	100	77.355

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020362	Cnot6	100	96.230	ENSG00000113300	CNOT6	100	100.000	Homo_sapiens
ENSMUSG00000020362	Cnot6	100	86.225	ENSAPOG00000009994	cnot6b	100	86.225	Acanthochromis_polyacanthus
ENSMUSG00000020362	Cnot6	100	96.780	ENSAMEG00000000949	CNOT6	99	96.780	Ailuropoda_melanoleuca
ENSMUSG00000020362	Cnot6	100	85.740	ENSACIG00000016566	cnot6b	100	85.740	Amphilophus_citrinellus
ENSMUSG00000020362	Cnot6	100	86.225	ENSAOCG00000006893	cnot6b	100	86.225	Amphiprion_ocellaris
ENSMUSG00000020362	Cnot6	100	86.225	ENSAPEG00000016949	cnot6b	100	86.225	Amphiprion_percula
ENSMUSG00000020362	Cnot6	100	84.258	ENSATEG00000007862	cnot6b	100	84.258	Anabas_testudineus
ENSMUSG00000020362	Cnot6	100	95.153	ENSAPLG00000012715	CNOT6	99	95.153	Anas_platyrhynchos
ENSMUSG00000020362	Cnot6	100	92.460	ENSACAG00000016548	CNOT6	100	92.460	Anolis_carolinensis
ENSMUSG00000020362	Cnot6	100	96.589	ENSANAG00000030436	CNOT6	96	96.589	Aotus_nancymaae
ENSMUSG00000020362	Cnot6	100	84.258	ENSACLG00000008279	cnot6b	100	85.152	Astatotilapia_calliptera
ENSMUSG00000020362	Cnot6	100	84.767	ENSAMXG00000034694	cnot6b	100	84.767	Astyanax_mexicanus
ENSMUSG00000020362	Cnot6	100	86.022	ENSAMXG00000019140	cnot6a	100	86.022	Astyanax_mexicanus
ENSMUSG00000020362	Cnot6	100	96.768	ENSBTAG00000017362	CNOT6	100	96.768	Bos_taurus
ENSMUSG00000020362	Cnot6	100	96.409	ENSCJAG00000009795	CNOT6	100	96.409	Callithrix_jacchus
ENSMUSG00000020362	Cnot6	100	97.127	ENSCAFG00000000464	CNOT6	100	97.127	Canis_familiaris
ENSMUSG00000020362	Cnot6	100	97.127	ENSCAFG00020002441	CNOT6	100	97.127	Canis_lupus_dingo
ENSMUSG00000020362	Cnot6	100	96.409	ENSCHIG00000019100	CNOT6	100	96.409	Capra_hircus
ENSMUSG00000020362	Cnot6	100	94.794	ENSTSYG00000003982	CNOT6	100	94.794	Carlito_syrichta
ENSMUSG00000020362	Cnot6	100	92.460	ENSCPOG00000035657	CNOT6	100	92.460	Cavia_porcellus
ENSMUSG00000020362	Cnot6	100	92.460	ENSCCAG00000033670	CNOT6	100	92.460	Cebus_capucinus
ENSMUSG00000020362	Cnot6	100	96.230	ENSCATG00000042014	CNOT6	100	96.230	Cercocebus_atys
ENSMUSG00000020362	Cnot6	100	96.230	ENSCLAG00000010489	CNOT6	100	96.230	Chinchilla_lanigera
ENSMUSG00000020362	Cnot6	100	96.230	ENSCSAG00000008165	CNOT6	100	96.230	Chlorocebus_sabaeus
ENSMUSG00000020362	Cnot6	100	95.691	ENSCHOG00000009680	CNOT6	100	95.691	Choloepus_hoffmanni
ENSMUSG00000020362	Cnot6	100	94.434	ENSCPBG00000008908	CNOT6	100	94.434	Chrysemys_picta_bellii
ENSMUSG00000020362	Cnot6	100	96.409	ENSCANG00000026756	CNOT6	100	96.409	Colobus_angolensis_palliatus
ENSMUSG00000020362	Cnot6	100	99.819	ENSCGRG00001011452	Cnot6	100	99.819	Cricetulus_griseus_chok1gshd
ENSMUSG00000020362	Cnot6	100	97.127	ENSCGRG00000010407	Cnot6	100	97.127	Cricetulus_griseus_crigri
ENSMUSG00000020362	Cnot6	100	85.331	ENSCSEG00000010939	cnot6b	100	85.331	Cynoglossus_semilaevis
ENSMUSG00000020362	Cnot6	100	84.946	ENSCVAG00000010538	cnot6b	100	84.946	Cyprinodon_variegatus
ENSMUSG00000020362	Cnot6	100	83.333	ENSDARG00000101072	cnot6b	100	83.333	Danio_rerio
ENSMUSG00000020362	Cnot6	100	85.484	ENSDARG00000008255	cnot6a	100	85.484	Danio_rerio
ENSMUSG00000020362	Cnot6	100	96.409	ENSDNOG00000041644	CNOT6	100	96.409	Dasypus_novemcinctus
ENSMUSG00000020362	Cnot6	100	87.276	ENSDORG00000001708	Cnot6	100	87.276	Dipodomys_ordii
ENSMUSG00000020362	Cnot6	100	77.102	ENSETEG00000006975	CNOT6	100	77.102	Echinops_telfairi
ENSMUSG00000020362	Cnot6	100	96.230	ENSEASG00005012794	-	100	96.230	Equus_asinus_asinus
ENSMUSG00000020362	Cnot6	89	92.698	ENSEASG00005012957	-	98	92.698	Equus_asinus_asinus
ENSMUSG00000020362	Cnot6	100	91.304	ENSECAG00000012704	-	99	91.304	Equus_caballus
ENSMUSG00000020362	Cnot6	100	96.948	ENSECAG00000019325	CNOT6	100	96.948	Equus_caballus
ENSMUSG00000020362	Cnot6	100	95.691	ENSEEUG00000015382	CNOT6	100	95.691	Erinaceus_europaeus
ENSMUSG00000020362	Cnot6	100	82.540	ENSELUG00000015981	cnot6b	99	82.540	Esox_lucius
ENSMUSG00000020362	Cnot6	100	81.362	ENSELUG00000024580	cnot6a	100	81.362	Esox_lucius
ENSMUSG00000020362	Cnot6	100	97.127	ENSFCAG00000001881	CNOT6	100	97.127	Felis_catus
ENSMUSG00000020362	Cnot6	100	95.332	ENSFALG00000007699	CNOT6	100	95.332	Ficedula_albicollis
ENSMUSG00000020362	Cnot6	100	95.871	ENSFDAG00000001999	CNOT6	100	95.871	Fukomys_damarensis
ENSMUSG00000020362	Cnot6	65	88.095	ENSFHEG00000013756	cnot6b	94	92.308	Fundulus_heteroclitus
ENSMUSG00000020362	Cnot6	95	84.121	ENSGMOG00000009767	cnot6b	99	84.121	Gadus_morhua
ENSMUSG00000020362	Cnot6	100	95.332	ENSGALG00000034316	CNOT6	100	95.332	Gallus_gallus
ENSMUSG00000020362	Cnot6	100	85.125	ENSGAFG00000008525	cnot6b	100	85.125	Gambusia_affinis
ENSMUSG00000020362	Cnot6	95	82.420	ENSGACG00000018046	cnot6b	99	82.420	Gasterosteus_aculeatus
ENSMUSG00000020362	Cnot6	100	78.636	ENSGAGG00000012176	CNOT6	100	78.636	Gopherus_agassizii
ENSMUSG00000020362	Cnot6	100	96.230	ENSGGOG00000003675	CNOT6	100	96.230	Gorilla_gorilla
ENSMUSG00000020362	Cnot6	100	84.436	ENSHBUG00000002819	cnot6b	100	85.331	Haplochromis_burtoni
ENSMUSG00000020362	Cnot6	100	96.409	ENSHGLG00000017756	CNOT6	100	96.409	Heterocephalus_glaber_female
ENSMUSG00000020362	Cnot6	100	96.409	ENSHGLG00100005747	CNOT6	100	96.409	Heterocephalus_glaber_male
ENSMUSG00000020362	Cnot6	100	83.574	ENSHCOG00000016176	cnot6b	100	84.477	Hippocampus_comes
ENSMUSG00000020362	Cnot6	100	84.946	ENSIPUG00000019831	cnot6a	100	84.946	Ictalurus_punctatus
ENSMUSG00000020362	Cnot6	100	84.229	ENSIPUG00000017482	cnot6b	100	84.229	Ictalurus_punctatus
ENSMUSG00000020362	Cnot6	100	96.589	ENSSTOG00000002803	CNOT6	100	96.589	Ictidomys_tridecemlineatus
ENSMUSG00000020362	Cnot6	100	96.230	ENSJJAG00000012296	Cnot6	100	96.230	Jaculus_jaculus
ENSMUSG00000020362	Cnot6	100	86.022	ENSKMAG00000004640	cnot6b	100	86.022	Kryptolebias_marmoratus
ENSMUSG00000020362	Cnot6	100	83.363	ENSLBEG00000027917	cnot6b	100	84.258	Labrus_bergylta
ENSMUSG00000020362	Cnot6	100	89.068	ENSLOCG00000010102	cnot6b	99	89.068	Lepisosteus_oculatus
ENSMUSG00000020362	Cnot6	100	96.948	ENSLAFG00000016742	CNOT6	100	96.948	Loxodonta_africana
ENSMUSG00000020362	Cnot6	100	96.230	ENSMFAG00000030867	CNOT6	100	96.230	Macaca_fascicularis
ENSMUSG00000020362	Cnot6	100	96.230	ENSMMUG00000018690	CNOT6	100	96.230	Macaca_mulatta
ENSMUSG00000020362	Cnot6	100	96.230	ENSMNEG00000038565	CNOT6	100	96.230	Macaca_nemestrina
ENSMUSG00000020362	Cnot6	100	96.230	ENSMLEG00000010555	CNOT6	100	96.230	Mandrillus_leucophaeus
ENSMUSG00000020362	Cnot6	100	86.404	ENSMAMG00000007515	cnot6b	100	86.404	Mastacembelus_armatus
ENSMUSG00000020362	Cnot6	100	84.258	ENSMZEG00005012899	cnot6b	100	85.152	Maylandia_zebra
ENSMUSG00000020362	Cnot6	100	99.820	ENSMAUG00000019798	Cnot6	100	99.820	Mesocricetus_auratus
ENSMUSG00000020362	Cnot6	100	94.794	ENSMICG00000013018	-	100	94.794	Microcebus_murinus
ENSMUSG00000020362	Cnot6	98	86.213	ENSMICG00000028378	-	99	86.213	Microcebus_murinus
ENSMUSG00000020362	Cnot6	100	99.820	ENSMOCG00000021662	Cnot6	100	99.820	Microtus_ochrogaster
ENSMUSG00000020362	Cnot6	100	83.906	ENSMMOG00000003227	cnot6b	100	83.906	Mola_mola
ENSMUSG00000020362	Cnot6	100	95.153	ENSMODG00000003979	CNOT6	100	95.153	Monodelphis_domestica
ENSMUSG00000020362	Cnot6	100	86.047	ENSMALG00000014251	cnot6b	100	86.047	Monopterus_albus
ENSMUSG00000020362	Cnot6	100	100.000	MGP_CAROLIEiJ_G0016277	Cnot6	100	100.000	Mus_caroli
ENSMUSG00000020362	Cnot6	100	100.000	MGP_PahariEiJ_G0017413	Cnot6	100	100.000	Mus_pahari
ENSMUSG00000020362	Cnot6	100	99.641	MGP_SPRETEiJ_G0017122	Cnot6	100	99.641	Mus_spretus
ENSMUSG00000020362	Cnot6	100	96.948	ENSMPUG00000000587	CNOT6	96	96.948	Mustela_putorius_furo
ENSMUSG00000020362	Cnot6	100	94.484	ENSMLUG00000010257	CNOT6	100	94.484	Myotis_lucifugus
ENSMUSG00000020362	Cnot6	100	98.743	ENSNGAG00000008269	Cnot6	100	98.743	Nannospalax_galili
ENSMUSG00000020362	Cnot6	100	84.436	ENSNBRG00000010798	cnot6b	100	85.331	Neolamprologus_brichardi
ENSMUSG00000020362	Cnot6	100	95.833	ENSNLEG00000002322	CNOT6	100	95.833	Nomascus_leucogenys
ENSMUSG00000020362	Cnot6	81	97.196	ENSMEUG00000000025	CNOT6	81	97.196	Notamacropus_eugenii
ENSMUSG00000020362	Cnot6	88	94.988	ENSOPRG00000008244	-	88	94.988	Ochotona_princeps
ENSMUSG00000020362	Cnot6	100	95.332	ENSODEG00000007041	CNOT6	100	95.332	Octodon_degus
ENSMUSG00000020362	Cnot6	75	84.397	ENSONIG00000013027	cnot6b	99	84.397	Oreochromis_niloticus
ENSMUSG00000020362	Cnot6	100	94.255	ENSOANG00000010226	CNOT6	100	94.255	Ornithorhynchus_anatinus
ENSMUSG00000020362	Cnot6	100	95.349	ENSOCUG00000011083	CNOT6	100	95.349	Oryctolagus_cuniculus
ENSMUSG00000020362	Cnot6	100	84.794	ENSORLG00000005059	cnot6b	100	84.794	Oryzias_latipes
ENSMUSG00000020362	Cnot6	100	84.794	ENSORLG00020012784	cnot6b	100	84.794	Oryzias_latipes_hni
ENSMUSG00000020362	Cnot6	94	83.939	ENSORLG00015022658	cnot6b	98	83.939	Oryzias_latipes_hsok
ENSMUSG00000020362	Cnot6	100	84.973	ENSOMEG00000005295	cnot6b	100	84.973	Oryzias_melastigma
ENSMUSG00000020362	Cnot6	94	95.992	ENSOGAG00000032470	CNOT6	100	95.992	Otolemur_garnettii
ENSMUSG00000020362	Cnot6	97	96.125	ENSOARG00000001003	CNOT6	100	96.125	Ovis_aries
ENSMUSG00000020362	Cnot6	100	96.230	ENSPPAG00000032253	CNOT6	100	96.230	Pan_paniscus
ENSMUSG00000020362	Cnot6	100	96.948	ENSPPRG00000011912	CNOT6	100	96.948	Panthera_pardus
ENSMUSG00000020362	Cnot6	100	96.948	ENSPTIG00000016794	CNOT6	100	96.948	Panthera_tigris_altaica
ENSMUSG00000020362	Cnot6	100	96.230	ENSPTRG00000017636	CNOT6	100	96.230	Pan_troglodytes
ENSMUSG00000020362	Cnot6	100	96.230	ENSPANG00000016191	CNOT6	100	96.230	Papio_anubis
ENSMUSG00000020362	Cnot6	100	86.022	ENSPKIG00000021368	cnot6b	100	86.022	Paramormyrops_kingsleyae
ENSMUSG00000020362	Cnot6	98	94.853	ENSPSIG00000017307	CNOT6	100	94.853	Pelodiscus_sinensis
ENSMUSG00000020362	Cnot6	100	85.560	ENSPMGG00000011238	cnot6b	100	85.560	Periophthalmus_magnuspinnatus
ENSMUSG00000020362	Cnot6	100	98.743	ENSPEMG00000000627	Cnot6	100	98.743	Peromyscus_maniculatus_bairdii
ENSMUSG00000020362	Cnot6	100	95.153	ENSPCIG00000020319	CNOT6	99	95.153	Phascolarctos_cinereus
ENSMUSG00000020362	Cnot6	100	84.946	ENSPFOG00000006291	cnot6b	100	84.946	Poecilia_formosa
ENSMUSG00000020362	Cnot6	100	81.555	ENSPLAG00000008266	cnot6b	100	81.555	Poecilia_latipinna
ENSMUSG00000020362	Cnot6	100	85.125	ENSPMEG00000009091	cnot6b	100	85.125	Poecilia_mexicana
ENSMUSG00000020362	Cnot6	100	84.448	ENSPREG00000003713	cnot6b	100	84.448	Poecilia_reticulata
ENSMUSG00000020362	Cnot6	100	96.230	ENSPPYG00000016137	CNOT6	100	96.230	Pongo_abelii
ENSMUSG00000020362	Cnot6	71	96.992	ENSPCAG00000005599	-	59	100.000	Procavia_capensis
ENSMUSG00000020362	Cnot6	100	91.203	ENSPCOG00000017359	CNOT6	100	91.921	Propithecus_coquereli
ENSMUSG00000020362	Cnot6	100	91.921	ENSPVAG00000003069	CNOT6	100	91.921	Pteropus_vampyrus
ENSMUSG00000020362	Cnot6	100	84.079	ENSPNYG00000000321	cnot6b	100	84.973	Pundamilia_nyererei
ENSMUSG00000020362	Cnot6	100	86.201	ENSPNAG00000029586	cnot6a	100	86.201	Pygocentrus_nattereri
ENSMUSG00000020362	Cnot6	100	84.946	ENSPNAG00000028816	cnot6b	100	84.946	Pygocentrus_nattereri
ENSMUSG00000020362	Cnot6	100	98.923	ENSRNOG00000054891	Cnot6	100	98.923	Rattus_norvegicus
ENSMUSG00000020362	Cnot6	100	96.050	ENSRBIG00000004309	CNOT6	100	96.050	Rhinopithecus_bieti
ENSMUSG00000020362	Cnot6	100	96.050	ENSRROG00000035378	CNOT6	100	96.537	Rhinopithecus_roxellana
ENSMUSG00000020362	Cnot6	100	96.409	ENSSBOG00000030494	CNOT6	100	96.409	Saimiri_boliviensis_boliviensis
ENSMUSG00000020362	Cnot6	100	95.153	ENSSHAG00000017436	CNOT6	100	95.153	Sarcophilus_harrisii
ENSMUSG00000020362	Cnot6	100	87.276	ENSSFOG00015015133	CNOT6	100	87.276	Scleropages_formosus
ENSMUSG00000020362	Cnot6	100	85.484	ENSSFOG00015022383	cnot6a	96	85.484	Scleropages_formosus
ENSMUSG00000020362	Cnot6	100	84.079	ENSSMAG00000003084	cnot6b	100	84.079	Scophthalmus_maximus
ENSMUSG00000020362	Cnot6	100	85.868	ENSSDUG00000004151	cnot6b	100	85.868	Seriola_dumerili
ENSMUSG00000020362	Cnot6	100	85.152	ENSSLDG00000004448	cnot6b	100	86.047	Seriola_lalandi_dorsalis
ENSMUSG00000020362	Cnot6	64	76.816	ENSSARG00000012650	-	100	76.816	Sorex_araneus
ENSMUSG00000020362	Cnot6	100	94.075	ENSSPUG00000007893	CNOT6	100	94.075	Sphenodon_punctatus
ENSMUSG00000020362	Cnot6	100	86.047	ENSSPAG00000000149	cnot6b	100	86.047	Stegastes_partitus
ENSMUSG00000020362	Cnot6	100	96.589	ENSSSCG00000014009	CNOT6	100	97.186	Sus_scrofa
ENSMUSG00000020362	Cnot6	100	94.973	ENSTGUG00000001119	CNOT6	100	94.973	Taeniopygia_guttata
ENSMUSG00000020362	Cnot6	100	83.483	ENSTRUG00000002818	cnot6b	100	83.483	Takifugu_rubripes
ENSMUSG00000020362	Cnot6	100	83.842	ENSTNIG00000004443	cnot6b	99	83.842	Tetraodon_nigroviridis
ENSMUSG00000020362	Cnot6	87	66.119	ENSTBEG00000017094	-	100	66.119	Tupaia_belangeri
ENSMUSG00000020362	Cnot6	100	96.768	ENSTTRG00000009363	CNOT6	100	96.768	Tursiops_truncatus
ENSMUSG00000020362	Cnot6	77	97.902	ENSUAMG00000004579	CNOT6	88	97.902	Ursus_americanus
ENSMUSG00000020362	Cnot6	100	92.466	ENSUMAG00000024577	CNOT6	100	92.466	Ursus_maritimus
ENSMUSG00000020362	Cnot6	83	96.028	ENSVPAG00000003593	CNOT6	83	96.028	Vicugna_pacos
ENSMUSG00000020362	Cnot6	100	97.127	ENSVVUG00000026940	CNOT6	100	97.127	Vulpes_vulpes
ENSMUSG00000020362	Cnot6	100	81.917	ENSXCOG00000003360	cnot6b	100	81.917	Xiphophorus_couchianus
ENSMUSG00000020362	Cnot6	100	85.125	ENSXMAG00000008730	cnot6b	100	85.125	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004532	exoribonuclease activity	-	ISO	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030014	CCR4-NOT complex	-	ISO	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0070966	nuclear-transcribed mRNA catabolic process, no-go decay	-	ISO	Process
GO:2000327	positive regulation of nuclear receptor transcription coactivator activity	-	ISO	Process