EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020402 (Gene tree)
Gene ID: 22333
Gene Symbol: Vdac1
Alias: Vdac5
Full Name: voltage-dependent anion channel 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 28538
Position: chr11: 52360860-52389397
Accession: 106919
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000157052	-	600	-	-	- (aa)	-	-
ENSMUST00000102758	-	2022	XM_017314500	ENSMUSP00000099819	283 (aa)	-	Q60932
ENSMUST00000153339	-	637	-	-	- (aa)	-	-
ENSMUST00000125694	-	951	-	ENSMUSP00000116919	254 (aa)	-	F2Z471
ENSMUST00000020673	-	891	-	ENSMUSP00000020673	296 (aa)	-	Q60932

Gene Model

Click here to download ENSMUSG00000020402's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04020	Calcium signaling pathway	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG
mmu04217	Necroptosis	KEGG
mmu04218	Cellular senescence	KEGG
mmu04621	NOD-like receptor signaling pathway	KEGG
mmu04979	Cholesterol metabolism	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG
mmu05164	Influenza A	KEGG
mmu05166	Human T-cell leukemia virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020402's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020402	Vdac1	98	41.071	WBGene00019900	vdac-1	98	41.071	Caenorhabditis_elegans
ENSMUSG00000020402	Vdac1	100	98.587	ENSG00000213585	VDAC1	100	98.587	Homo_sapiens
ENSMUSG00000020402	Vdac1	100	74.205	ENSG00000165637	VDAC2	96	74.539	Homo_sapiens
ENSMUSG00000020402	Vdac1	100	74.205	ENSMUSG00000021771	Vdac2	100	74.205	Mus_musculus
ENSMUSG00000020402	Vdac1	100	67.491	ENSMUSG00000008892	Vdac3	100	67.491	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001662	behavioral fear response	11907043.	IMP	Process
GO:0005253	anion channel activity	-	ISO	Function
GO:0005515	protein binding	22079573.25470454.	IPI	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	17376863.19646951.23028046.26767982.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005741	mitochondrial outer membrane	21873635.	IBA	Component
GO:0005741	mitochondrial outer membrane	17376863.	ISO	Component
GO:0005741	mitochondrial outer membrane	18385140.	ISS	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	18385140.	ISS	Component
GO:0005757	mitochondrial permeability transition pore complex	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006811	ion transport	-	IEA	Process
GO:0006820	anion transport	-	ISO	Process
GO:0006851	mitochondrial calcium ion transmembrane transport	-	ISO	Process
GO:0006915	apoptotic process	-	ISO	Process
GO:0007268	chemical synaptic transmission	11907043.	IMP	Process
GO:0007270	neuron-neuron synaptic transmission	11907043.	IMP	Process
GO:0007612	learning	11907043.	IMP	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0008308	voltage-gated anion channel activity	21873635.	IBA	Function
GO:0008308	voltage-gated anion channel activity	18988731.	IDA	Function
GO:0008308	voltage-gated anion channel activity	-	ISO	Function
GO:0015288	porin activity	-	IEA	Function
GO:0016020	membrane	18988731.	IDA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044325	ion channel binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0046930	pore complex	-	IEA	Component
GO:0055085	transmembrane transport	-	IEA	Process
GO:1903146	regulation of autophagy of mitochondrion	25470454.	IMP	Process
GO:2000378	negative regulation of reactive oxygen species metabolic process	25470454.	IMP	Process