EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020430 (Gene tree)
Gene ID: 64934
Gene Symbol: Pes1
Alias: -
Full Name: pescadillo ribosomal biogenesis factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 16030 bases
Position: chr11:3963975-3980004
Accession: 1890613
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020705	Pescadillo_N	PF06732.11	1.3e-125	1	1
ENSMUSP00000105612	Pescadillo_N	PF06732.11	6.3e-123	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000130973	-	497	-	-	- (aa)	-	-
ENSMUST00000020705	-	2911	XM_017314702	ENSMUSP00000020705	584 (aa)	XP_017170191	Q9EQ61
ENSMUST00000137544	-	879	-	-	- (aa)	-	-
ENSMUST00000109985	-	2923	-	ENSMUSP00000105612	588 (aa)	-	Q5SQ20

Gene Model

Click here to download ENSMUSG00000020430's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020430's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020430	Pes1	99	89.097	ENSG00000100029	PES1	100	92.593	Homo_sapiens
ENSMUSG00000020430	Pes1	98	71.478	ENSAPOG00000010054	pes	99	71.624	Acanthochromis_polyacanthus
ENSMUSG00000020430	Pes1	100	87.606	ENSAMEG00000007417	PES1	100	87.606	Ailuropoda_melanoleuca
ENSMUSG00000020430	Pes1	98	71.777	ENSACIG00000017610	pes	99	70.890	Amphilophus_citrinellus
ENSMUSG00000020430	Pes1	98	71.007	ENSAOCG00000008883	pes	99	70.137	Amphiprion_ocellaris
ENSMUSG00000020430	Pes1	98	71.478	ENSAPEG00000022652	pes	99	71.111	Amphiprion_percula
ENSMUSG00000020430	Pes1	98	69.739	ENSATEG00000007439	pes	99	69.363	Anabas_testudineus
ENSMUSG00000020430	Pes1	93	75.000	ENSAPLG00000014852	PES1	99	73.022	Anas_platyrhynchos
ENSMUSG00000020430	Pes1	98	75.820	ENSACAG00000009723	PES1	99	77.338	Anolis_carolinensis
ENSMUSG00000020430	Pes1	98	72.000	ENSANAG00000021598	-	94	71.626	Aotus_nancymaae
ENSMUSG00000020430	Pes1	99	89.097	ENSANAG00000036411	PES1	99	88.927	Aotus_nancymaae
ENSMUSG00000020430	Pes1	98	71.130	ENSACLG00000000815	pes	99	70.719	Astatotilapia_calliptera
ENSMUSG00000020430	Pes1	99	61.880	ENSAMXG00000001216	pes	99	61.953	Astyanax_mexicanus
ENSMUSG00000020430	Pes1	100	81.068	ENSBTAG00000007728	PES1	100	82.686	Bos_taurus
ENSMUSG00000020430	Pes1	77	49.890	WBGene00003063	lpd-7	79	51.810	Caenorhabditis_elegans
ENSMUSG00000020430	Pes1	99	89.438	ENSCJAG00000010617	PES1	99	88.927	Callithrix_jacchus
ENSMUSG00000020430	Pes1	100	88.718	ENSCAFG00000012792	PES1	100	88.718	Canis_familiaris
ENSMUSG00000020430	Pes1	100	88.870	ENSCAFG00020000977	PES1	100	88.870	Canis_lupus_dingo
ENSMUSG00000020430	Pes1	100	86.905	ENSCHIG00000015760	PES1	100	87.075	Capra_hircus
ENSMUSG00000020430	Pes1	100	90.290	ENSTSYG00000009798	PES1	100	90.290	Carlito_syrichta
ENSMUSG00000020430	Pes1	99	74.873	ENSCAPG00000012218	-	99	74.363	Cavia_aperea
ENSMUSG00000020430	Pes1	86	87.450	ENSCAPG00000007736	-	91	87.450	Cavia_aperea
ENSMUSG00000020430	Pes1	99	74.703	ENSCPOG00000022594	-	99	74.194	Cavia_porcellus
ENSMUSG00000020430	Pes1	100	83.077	ENSCPOG00000039303	-	100	82.906	Cavia_porcellus
ENSMUSG00000020430	Pes1	100	88.027	ENSCPOG00000003565	-	100	88.305	Cavia_porcellus
ENSMUSG00000020430	Pes1	99	88.927	ENSCCAG00000026457	PES1	99	88.416	Cebus_capucinus
ENSMUSG00000020430	Pes1	99	88.285	ENSCATG00000036948	PES1	99	88.285	Cercocebus_atys
ENSMUSG00000020430	Pes1	100	89.573	ENSCLAG00000010775	PES1	100	89.744	Chinchilla_lanigera
ENSMUSG00000020430	Pes1	99	87.925	ENSCSAG00000009207	PES1	99	88.435	Chlorocebus_sabaeus
ENSMUSG00000020430	Pes1	99	78.840	ENSCPBG00000007548	PES1	99	79.010	Chrysemys_picta_bellii
ENSMUSG00000020430	Pes1	99	89.573	ENSCANG00000039970	PES1	99	88.889	Colobus_angolensis_palliatus
ENSMUSG00000020430	Pes1	61	97.183	ENSCGRG00000015052	Pes1	97	97.183	Cricetulus_griseus_crigri
ENSMUSG00000020430	Pes1	98	71.652	ENSCSEG00000017612	pes	100	71.282	Cynoglossus_semilaevis
ENSMUSG00000020430	Pes1	98	72.077	ENSCVAG00000011600	pes	99	70.890	Cyprinodon_variegatus
ENSMUSG00000020430	Pes1	97	71.228	ENSDARG00000018902	pes	99	71.502	Danio_rerio
ENSMUSG00000020430	Pes1	98	58.188	ENSDNOG00000031909	-	100	58.188	Dasypus_novemcinctus
ENSMUSG00000020430	Pes1	100	88.034	ENSDNOG00000015709	-	100	88.034	Dasypus_novemcinctus
ENSMUSG00000020430	Pes1	96	87.701	ENSDORG00000016636	Pes1	100	88.968	Dipodomys_ordii
ENSMUSG00000020430	Pes1	81	57.143	ENSEBUG00000010234	pes	99	58.058	Eptatretus_burgeri
ENSMUSG00000020430	Pes1	95	71.199	ENSEASG00005010295	PES1	100	69.898	Equus_asinus_asinus
ENSMUSG00000020430	Pes1	100	88.067	ENSECAG00000002578	PES1	100	88.403	Equus_caballus
ENSMUSG00000020430	Pes1	98	70.690	ENSELUG00000003253	pes	99	71.186	Esox_lucius
ENSMUSG00000020430	Pes1	100	88.586	ENSFCAG00000008655	PES1	100	88.927	Felis_catus
ENSMUSG00000020430	Pes1	93	75.818	ENSFALG00000006909	PES1	99	73.703	Ficedula_albicollis
ENSMUSG00000020430	Pes1	100	88.832	ENSFDAG00000019029	PES1	100	88.325	Fukomys_damarensis
ENSMUSG00000020430	Pes1	98	67.133	ENSFHEG00000000287	pes	99	66.781	Fundulus_heteroclitus
ENSMUSG00000020430	Pes1	99	69.416	ENSGMOG00000013010	pes	99	69.416	Gadus_morhua
ENSMUSG00000020430	Pes1	98	78.223	ENSGALG00000007778	PES1	99	78.238	Gallus_gallus
ENSMUSG00000020430	Pes1	98	71.902	ENSGAFG00000012399	pes	99	71.527	Gambusia_affinis
ENSMUSG00000020430	Pes1	99	69.283	ENSGACG00000009302	pes	99	69.795	Gasterosteus_aculeatus
ENSMUSG00000020430	Pes1	99	78.157	ENSGAGG00000010897	PES1	99	78.840	Gopherus_agassizii
ENSMUSG00000020430	Pes1	99	68.313	ENSGGOG00000028472	-	99	68.654	Gorilla_gorilla
ENSMUSG00000020430	Pes1	99	89.438	ENSGGOG00000008530	PES1	99	89.267	Gorilla_gorilla
ENSMUSG00000020430	Pes1	82	83.871	ENSHBUG00000008000	pes	98	83.871	Haplochromis_burtoni
ENSMUSG00000020430	Pes1	100	90.694	ENSHGLG00000018472	PES1	100	89.509	Heterocephalus_glaber_female
ENSMUSG00000020430	Pes1	100	89.966	ENSHGLG00100004887	PES1	100	89.286	Heterocephalus_glaber_male
ENSMUSG00000020430	Pes1	99	68.847	ENSHCOG00000016666	pes	99	69.707	Hippocampus_comes
ENSMUSG00000020430	Pes1	98	70.383	ENSIPUG00000020261	pes1	99	69.811	Ictalurus_punctatus
ENSMUSG00000020430	Pes1	100	90.769	ENSSTOG00000013937	PES1	100	90.769	Ictidomys_tridecemlineatus
ENSMUSG00000020430	Pes1	100	90.273	ENSJJAG00000001782	-	100	90.102	Jaculus_jaculus
ENSMUSG00000020430	Pes1	85	82.723	ENSJJAG00000010640	-	93	87.838	Jaculus_jaculus
ENSMUSG00000020430	Pes1	98	72.522	ENSKMAG00000015285	pes	99	71.918	Kryptolebias_marmoratus
ENSMUSG00000020430	Pes1	98	67.535	ENSLBEG00000012366	pes	99	67.123	Labrus_bergylta
ENSMUSG00000020430	Pes1	98	74.520	ENSLACG00000017116	PES1	99	74.010	Latimeria_chalumnae
ENSMUSG00000020430	Pes1	98	65.794	ENSLOCG00000003935	pes	99	65.128	Lepisosteus_oculatus
ENSMUSG00000020430	Pes1	79	66.875	ENSLAFG00000022882	PES1	100	66.247	Loxodonta_africana
ENSMUSG00000020430	Pes1	99	88.927	ENSMFAG00000044708	PES1	99	88.756	Macaca_fascicularis
ENSMUSG00000020430	Pes1	99	88.756	ENSMMUG00000017562	PES1	99	88.586	Macaca_mulatta
ENSMUSG00000020430	Pes1	99	88.927	ENSMNEG00000029489	PES1	99	88.756	Macaca_nemestrina
ENSMUSG00000020430	Pes1	99	87.925	ENSMLEG00000038584	PES1	99	88.435	Mandrillus_leucophaeus
ENSMUSG00000020430	Pes1	99	64.626	ENSMLEG00000030317	-	99	63.946	Mandrillus_leucophaeus
ENSMUSG00000020430	Pes1	98	72.174	ENSMAMG00000014668	pes	99	71.575	Mastacembelus_armatus
ENSMUSG00000020430	Pes1	100	92.007	ENSMAUG00000018433	Pes1	100	91.823	Mesocricetus_auratus
ENSMUSG00000020430	Pes1	100	88.586	ENSMICG00000010123	PES1	100	89.267	Microcebus_murinus
ENSMUSG00000020430	Pes1	100	93.367	ENSMOCG00000021971	Pes1	100	92.687	Microtus_ochrogaster
ENSMUSG00000020430	Pes1	98	64.510	ENSMMOG00000017812	pes	99	64.433	Mola_mola
ENSMUSG00000020430	Pes1	98	79.545	ENSMODG00000009483	PES1	99	79.210	Monodelphis_domestica
ENSMUSG00000020430	Pes1	98	71.826	ENSMALG00000012929	pes	99	70.890	Monopterus_albus
ENSMUSG00000020430	Pes1	100	93.003	MGP_CAROLIEiJ_G0016021	Pes1	100	93.003	Mus_caroli
ENSMUSG00000020430	Pes1	100	100.000	MGP_PahariEiJ_G0016870	-	100	96.944	Mus_pahari
ENSMUSG00000020430	Pes1	100	97.970	MGP_SPRETEiJ_G0016862	Pes1	100	97.970	Mus_spretus
ENSMUSG00000020430	Pes1	100	88.416	ENSMPUG00000012950	PES1	100	88.756	Mustela_putorius_furo
ENSMUSG00000020430	Pes1	100	91.638	ENSNGAG00000015282	Pes1	100	91.809	Nannospalax_galili
ENSMUSG00000020430	Pes1	98	71.254	ENSNBRG00000006301	pes	99	70.719	Neolamprologus_brichardi
ENSMUSG00000020430	Pes1	99	80.272	ENSNLEG00000003908	PES1	99	80.612	Nomascus_leucogenys
ENSMUSG00000020430	Pes1	97	76.357	ENSMEUG00000011656	PES1	90	86.456	Notamacropus_eugenii
ENSMUSG00000020430	Pes1	100	84.654	ENSOPRG00000000636	PES1	100	84.992	Ochotona_princeps
ENSMUSG00000020430	Pes1	100	88.625	ENSODEG00000003187	PES1	100	88.455	Octodon_degus
ENSMUSG00000020430	Pes1	98	73.264	ENSONIG00000013543	pes	99	72.696	Oreochromis_niloticus
ENSMUSG00000020430	Pes1	61	75.069	ENSOANG00000012901	-	98	73.867	Ornithorhynchus_anatinus
ENSMUSG00000020430	Pes1	99	85.690	ENSOCUG00000009658	PES1	100	86.542	Oryctolagus_cuniculus
ENSMUSG00000020430	Pes1	98	70.506	ENSORLG00000007881	pes	100	70.085	Oryzias_latipes
ENSMUSG00000020430	Pes1	98	71.478	ENSORLG00020000368	pes	100	71.111	Oryzias_latipes_hni
ENSMUSG00000020430	Pes1	98	70.435	ENSORLG00015002220	pes	100	70.085	Oryzias_latipes_hsok
ENSMUSG00000020430	Pes1	98	71.951	ENSOMEG00000002922	pes	100	70.769	Oryzias_melastigma
ENSMUSG00000020430	Pes1	98	86.655	ENSOGAG00000005804	PES1	100	86.348	Otolemur_garnettii
ENSMUSG00000020430	Pes1	95	68.458	ENSOARG00000008214	PES1	100	69.671	Ovis_aries
ENSMUSG00000020430	Pes1	99	89.438	ENSPPAG00000029696	PES1	99	89.267	Pan_paniscus
ENSMUSG00000020430	Pes1	100	88.927	ENSPPRG00000024146	PES1	100	89.267	Panthera_pardus
ENSMUSG00000020430	Pes1	76	85.938	ENSPTIG00000021654	PES1	100	86.384	Panthera_tigris_altaica
ENSMUSG00000020430	Pes1	99	61.565	ENSPTRG00000045557	-	99	61.921	Pan_troglodytes
ENSMUSG00000020430	Pes1	99	89.608	ENSPTRG00000014251	PES1	99	89.438	Pan_troglodytes
ENSMUSG00000020430	Pes1	99	88.095	ENSPANG00000009607	PES1	99	88.605	Papio_anubis
ENSMUSG00000020430	Pes1	97	69.363	ENSPKIG00000024750	pes	99	69.076	Paramormyrops_kingsleyae
ENSMUSG00000020430	Pes1	98	70.928	ENSPMGG00000019024	pes	100	70.447	Periophthalmus_magnuspinnatus
ENSMUSG00000020430	Pes1	100	92.373	ENSPEMG00000012585	Pes1	100	92.034	Peromyscus_maniculatus_bairdii
ENSMUSG00000020430	Pes1	98	78.883	ENSPCIG00000023994	PES1	99	78.388	Phascolarctos_cinereus
ENSMUSG00000020430	Pes1	98	71.254	ENSPFOG00000014821	pes	99	71.404	Poecilia_formosa
ENSMUSG00000020430	Pes1	98	71.429	ENSPLAG00000003811	pes	99	71.575	Poecilia_latipinna
ENSMUSG00000020430	Pes1	98	71.429	ENSPMEG00000019878	pes	99	71.404	Poecilia_mexicana
ENSMUSG00000020430	Pes1	98	69.580	ENSPREG00000022586	pes	99	70.224	Poecilia_reticulata
ENSMUSG00000020430	Pes1	99	89.267	ENSPPYG00000011716	PES1	99	88.756	Pongo_abelii
ENSMUSG00000020430	Pes1	76	90.102	ENSPCAG00000011542	PES1	75	91.026	Procavia_capensis
ENSMUSG00000020430	Pes1	100	87.585	ENSPCOG00000016226	PES1	100	88.435	Propithecus_coquereli
ENSMUSG00000020430	Pes1	99	69.138	ENSPNAG00000020800	pes	99	69.125	Pygocentrus_nattereri
ENSMUSG00000020430	Pes1	100	94.027	ENSRNOG00000004515	Pes1	100	93.174	Rattus_norvegicus
ENSMUSG00000020430	Pes1	99	88.055	ENSRBIG00000040634	PES1	99	88.396	Rhinopithecus_bieti
ENSMUSG00000020430	Pes1	99	65.753	ENSRBIG00000034572	-	99	65.068	Rhinopithecus_bieti
ENSMUSG00000020430	Pes1	99	88.055	ENSRROG00000028779	PES1	99	88.396	Rhinopithecus_roxellana
ENSMUSG00000020430	Pes1	72	44.565	YGR103W	NOP7	97	40.000	Saccharomyces_cerevisiae
ENSMUSG00000020430	Pes1	99	89.249	ENSSBOG00000026073	PES1	99	89.420	Saimiri_boliviensis_boliviensis
ENSMUSG00000020430	Pes1	96	78.169	ENSSHAG00000002920	PES1	96	78.169	Sarcophilus_harrisii
ENSMUSG00000020430	Pes1	98	68.750	ENSSFOG00015005010	pes1	99	68.268	Scleropages_formosus
ENSMUSG00000020430	Pes1	99	70.890	ENSSMAG00000012102	pes	99	71.062	Scophthalmus_maximus
ENSMUSG00000020430	Pes1	98	71.280	ENSSDUG00000013213	pes	99	71.721	Seriola_dumerili
ENSMUSG00000020430	Pes1	98	71.701	ENSSLDG00000025373	pes	99	71.624	Seriola_lalandi_dorsalis
ENSMUSG00000020430	Pes1	98	77.257	ENSSPUG00000018150	PES1	99	76.621	Sphenodon_punctatus
ENSMUSG00000020430	Pes1	98	72.174	ENSSPAG00000018970	pes	99	71.502	Stegastes_partitus
ENSMUSG00000020430	Pes1	100	85.284	ENSSSCG00000010010	PES1	100	86.667	Sus_scrofa
ENSMUSG00000020430	Pes1	63	66.310	ENSTGUG00000015553	PES1	100	66.578	Taeniopygia_guttata
ENSMUSG00000020430	Pes1	98	70.157	ENSTRUG00000015909	pes	99	69.759	Takifugu_rubripes
ENSMUSG00000020430	Pes1	90	75.510	ENSTNIG00000015898	pes	99	75.510	Tetraodon_nigroviridis
ENSMUSG00000020430	Pes1	99	87.522	ENSTBEG00000009825	PES1	99	87.868	Tupaia_belangeri
ENSMUSG00000020430	Pes1	95	84.135	ENSTTRG00000001543	PES1	100	85.205	Tursiops_truncatus
ENSMUSG00000020430	Pes1	100	88.285	ENSUAMG00000006854	PES1	100	88.455	Ursus_americanus
ENSMUSG00000020430	Pes1	100	86.288	ENSUMAG00000016429	PES1	100	86.789	Ursus_maritimus
ENSMUSG00000020430	Pes1	100	87.671	ENSVVUG00000029961	-	100	87.671	Vulpes_vulpes
ENSMUSG00000020430	Pes1	100	88.699	ENSVVUG00000002684	-	100	88.699	Vulpes_vulpes
ENSMUSG00000020430	Pes1	100	66.836	ENSXETG00000030097	PES1	100	66.497	Xenopus_tropicalis
ENSMUSG00000020430	Pes1	98	70.506	ENSXCOG00000017009	pes	99	70.154	Xiphophorus_couchianus
ENSMUSG00000020430	Pes1	98	70.506	ENSXMAG00000007708	pes	99	69.983	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	25190460.	IMP	Process
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	ISO	Process
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	ISO	Process
GO:0000793	condensed chromosome	12237316.	IDA	Component
GO:0005515	protein binding	15225545.17308336.	IPI	Function
GO:0005634	nucleus	11112348.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	12237316.15225545.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006364	rRNA processing	15225545.	IGI	Process
GO:0006364	rRNA processing	15225545.	IMP	Process
GO:0006364	rRNA processing	-	ISO	Process
GO:0007000	nucleolus organization	12237316.	IMP	Process
GO:0008283	cell proliferation	-	ISO	Process
GO:0030687	preribosome, large subunit precursor	-	ISO	Component
GO:0033365	protein localization to organelle	15225545.	IMP	Process
GO:0042254	ribosome biogenesis	12237316.	IMP	Process
GO:0051726	regulation of cell cycle	-	ISO	Process
GO:0070545	PeBoW complex	21873635.	IBA	Component
GO:0070545	PeBoW complex	16738141.	IDA	Component
GO:0070545	PeBoW complex	-	ISO	Component