EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020453 (Gene tree)
Gene ID: 56218
Gene Symbol: Patz1
Alias: 8430401L15Rik|MAZR|POZ-AT hook-zinc finger protein|Zfp278
Full Name: POZ (BTB) and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 20210 bases
Position: chr11:3288874-3309083
Accession: 1891832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000105670	zf-C2H2	PF00096.26	5e-26	1	5
ENSMUSP00000105670	zf-C2H2	PF00096.26	5e-26	2	5
ENSMUSP00000105670	zf-C2H2	PF00096.26	5e-26	3	5
ENSMUSP00000105670	zf-C2H2	PF00096.26	5e-26	4	5
ENSMUSP00000105670	zf-C2H2	PF00096.26	5e-26	5	5
ENSMUSP00000050684	zf-C2H2	PF00096.26	6.4e-20	1	4
ENSMUSP00000050684	zf-C2H2	PF00096.26	6.4e-20	2	4
ENSMUSP00000050684	zf-C2H2	PF00096.26	6.4e-20	3	4
ENSMUSP00000050684	zf-C2H2	PF00096.26	6.4e-20	4	4
ENSMUSP00000091103	zf-C2H2	PF00096.26	2.4e-16	1	3
ENSMUSP00000091103	zf-C2H2	PF00096.26	2.4e-16	2	3
ENSMUSP00000091103	zf-C2H2	PF00096.26	2.4e-16	3	3
ENSMUSP00000092043	zf-C2H2	PF00096.26	2.8e-15	1	3
ENSMUSP00000092043	zf-C2H2	PF00096.26	2.8e-15	2	3
ENSMUSP00000092043	zf-C2H2	PF00096.26	2.8e-15	3	3
ENSMUSP00000105670	zf-met	PF12874.7	4.7e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000057089	-	3118	-	ENSMUSP00000050684	641 (aa)	-	Q9JMG9
ENSMUST00000142561	-	798	-	-	- (aa)	-	-
ENSMUST00000093402	-	3173	-	ENSMUSP00000091103	537 (aa)	-	Q5NBZ1
ENSMUST00000144396	-	844	-	-	- (aa)	-	-
ENSMUST00000153603	-	456	-	-	- (aa)	-	-
ENSMUST00000094471	-	2930	-	ENSMUSP00000092043	537 (aa)	-	Q5NBZ2
ENSMUST00000101644	-	1853	NR_045109	-	- (aa)	-	-
ENSMUST00000123983	-	1249	-	-	- (aa)	-	-
ENSMUST00000110043	-	3702	-	ENSMUSP00000105670	687 (aa)	-	Q5NBY9
ENSMUST00000154319	-	495	-	ENSMUSP00000122832	70 (aa)	-	Q5NBY8
ENSMUST00000134089	-	1904	-	ENSMUSP00000138522	102 (aa)	-	Q7TNQ3
ENSMUST00000136285	-	652	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020453's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020453	Patz1	88	36.232	ENSMUSG00000049672	Zbtb14	90	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020453	Patz1	100	98.981	ENSG00000100105	PATZ1	100	98.981	Homo_sapiens
ENSMUSG00000020453	Patz1	99	60.803	ENSAPOG00000018447	patz1	100	59.520	Acanthochromis_polyacanthus
ENSMUSG00000020453	Patz1	100	98.690	ENSAMEG00000007074	PATZ1	100	98.690	Ailuropoda_melanoleuca
ENSMUSG00000020453	Patz1	100	60.425	ENSACIG00000016779	patz1	100	60.155	Amphilophus_citrinellus
ENSMUSG00000020453	Patz1	100	57.983	ENSAPEG00000013354	patz1	100	57.983	Amphiprion_percula
ENSMUSG00000020453	Patz1	100	63.137	ENSATEG00000011260	patz1	100	62.745	Anabas_testudineus
ENSMUSG00000020453	Patz1	85	90.925	ENSAPLG00000003934	PATZ1	99	90.753	Anas_platyrhynchos
ENSMUSG00000020453	Patz1	100	98.981	ENSANAG00000029603	PATZ1	100	98.981	Aotus_nancymaae
ENSMUSG00000020453	Patz1	97	62.424	ENSAMXG00000002273	patz1	98	60.862	Astyanax_mexicanus
ENSMUSG00000020453	Patz1	100	98.752	ENSBTAG00000005478	PATZ1	100	98.752	Bos_taurus
ENSMUSG00000020453	Patz1	100	98.981	ENSCJAG00000010978	PATZ1	100	98.981	Callithrix_jacchus
ENSMUSG00000020453	Patz1	100	98.908	ENSCAFG00000013087	PATZ1	100	98.836	Canis_familiaris
ENSMUSG00000020453	Patz1	100	98.284	ENSCHIG00000020203	PATZ1	100	98.284	Capra_hircus
ENSMUSG00000020453	Patz1	100	98.908	ENSTSYG00000033183	PATZ1	100	98.908	Carlito_syrichta
ENSMUSG00000020453	Patz1	100	98.981	ENSCCAG00000028772	PATZ1	100	98.981	Cebus_capucinus
ENSMUSG00000020453	Patz1	100	98.981	ENSCATG00000006101	PATZ1	100	98.981	Cercocebus_atys
ENSMUSG00000020453	Patz1	100	88.841	ENSCPBG00000011277	PATZ1	100	88.551	Chrysemys_picta_bellii
ENSMUSG00000020453	Patz1	100	98.981	ENSCANG00000024972	PATZ1	100	98.981	Colobus_angolensis_palliatus
ENSMUSG00000020453	Patz1	100	97.380	ENSCGRG00001004071	Patz1	100	97.380	Cricetulus_griseus_chok1gshd
ENSMUSG00000020453	Patz1	93	98.134	ENSCGRG00000004814	Patz1	100	98.134	Cricetulus_griseus_crigri
ENSMUSG00000020453	Patz1	100	55.168	ENSCSEG00000001385	patz1	100	55.182	Cynoglossus_semilaevis
ENSMUSG00000020453	Patz1	100	58.997	ENSCVAG00000007684	patz1	100	59.380	Cyprinodon_variegatus
ENSMUSG00000020453	Patz1	97	60.679	ENSDARG00000076584	patz1	98	58.815	Danio_rerio
ENSMUSG00000020453	Patz1	97	95.420	ENSDNOG00000003183	PATZ1	100	98.061	Dasypus_novemcinctus
ENSMUSG00000020453	Patz1	100	99.220	ENSDORG00000023834	Patz1	100	99.220	Dipodomys_ordii
ENSMUSG00000020453	Patz1	100	98.752	ENSECAG00000025030	PATZ1	100	98.752	Equus_caballus
ENSMUSG00000020453	Patz1	99	61.509	ENSELUG00000002333	patz1	100	57.977	Esox_lucius
ENSMUSG00000020453	Patz1	100	98.908	ENSFCAG00000030253	PATZ1	100	98.908	Felis_catus
ENSMUSG00000020453	Patz1	86	91.356	ENSFALG00000007450	PATZ1	99	91.312	Ficedula_albicollis
ENSMUSG00000020453	Patz1	96	97.076	ENSFDAG00000005614	PATZ1	100	97.076	Fukomys_damarensis
ENSMUSG00000020453	Patz1	100	57.918	ENSFHEG00000014755	patz1	100	57.625	Fundulus_heteroclitus
ENSMUSG00000020453	Patz1	98	54.979	ENSGMOG00000001062	patz1	98	54.709	Gadus_morhua
ENSMUSG00000020453	Patz1	100	88.201	ENSGALG00000006934	PATZ1	100	88.201	Gallus_gallus
ENSMUSG00000020453	Patz1	100	59.029	ENSGAFG00000010053	patz1	100	58.003	Gambusia_affinis
ENSMUSG00000020453	Patz1	85	91.595	ENSGAGG00000003214	PATZ1	100	91.424	Gopherus_agassizii
ENSMUSG00000020453	Patz1	100	99.127	ENSGGOG00000017171	PATZ1	100	99.127	Gorilla_gorilla
ENSMUSG00000020453	Patz1	98	62.648	ENSHCOG00000017644	patz1	98	61.191	Hippocampus_comes
ENSMUSG00000020453	Patz1	97	60.489	ENSIPUG00000017653	patz1	97	53.890	Ictalurus_punctatus
ENSMUSG00000020453	Patz1	100	98.690	ENSSTOG00000020707	PATZ1	100	98.690	Ictidomys_tridecemlineatus
ENSMUSG00000020453	Patz1	100	97.533	ENSJJAG00000015259	Patz1	100	97.533	Jaculus_jaculus
ENSMUSG00000020453	Patz1	100	57.775	ENSKMAG00000008157	patz1	100	57.872	Kryptolebias_marmoratus
ENSMUSG00000020453	Patz1	100	98.108	ENSLAFG00000002317	PATZ1	100	98.108	Loxodonta_africana
ENSMUSG00000020453	Patz1	100	98.836	ENSMFAG00000040968	PATZ1	100	98.836	Macaca_fascicularis
ENSMUSG00000020453	Patz1	100	98.836	ENSMNEG00000037588	PATZ1	100	98.836	Macaca_nemestrina
ENSMUSG00000020453	Patz1	100	98.981	ENSMLEG00000030938	PATZ1	100	98.981	Mandrillus_leucophaeus
ENSMUSG00000020453	Patz1	100	57.625	ENSMAMG00000023652	patz1	100	57.918	Mastacembelus_armatus
ENSMUSG00000020453	Patz1	85	87.350	ENSMGAG00000008439	PATZ1	100	87.179	Meleagris_gallopavo
ENSMUSG00000020453	Patz1	100	99.127	ENSMAUG00000004129	Patz1	100	99.127	Mesocricetus_auratus
ENSMUSG00000020453	Patz1	100	98.752	ENSMICG00000005430	PATZ1	100	98.752	Microcebus_murinus
ENSMUSG00000020453	Patz1	100	98.981	ENSMOCG00000014488	Patz1	100	98.981	Microtus_ochrogaster
ENSMUSG00000020453	Patz1	99	55.664	ENSMMOG00000021679	patz1	100	49.168	Mola_mola
ENSMUSG00000020453	Patz1	100	57.001	ENSMALG00000021172	patz1	100	57.001	Monopterus_albus
ENSMUSG00000020453	Patz1	100	100.000	MGP_CAROLIEiJ_G0016007	Patz1	100	100.000	Mus_caroli
ENSMUSG00000020453	Patz1	100	100.000	MGP_PahariEiJ_G0016884	Patz1	100	100.000	Mus_pahari
ENSMUSG00000020453	Patz1	100	100.000	MGP_SPRETEiJ_G0016846	Patz1	100	100.000	Mus_spretus
ENSMUSG00000020453	Patz1	100	98.596	ENSMLUG00000009942	PATZ1	100	98.596	Myotis_lucifugus
ENSMUSG00000020453	Patz1	100	99.418	ENSNGAG00000010268	Patz1	100	99.418	Nannospalax_galili
ENSMUSG00000020453	Patz1	100	60.232	ENSNBRG00000016032	patz1	100	59.961	Neolamprologus_brichardi
ENSMUSG00000020453	Patz1	68	93.548	ENSMEUG00000016293	PATZ1	100	93.548	Notamacropus_eugenii
ENSMUSG00000020453	Patz1	100	97.972	ENSODEG00000003589	PATZ1	100	97.972	Octodon_degus
ENSMUSG00000020453	Patz1	100	58.918	ENSONIG00000004248	patz1	100	58.858	Oreochromis_niloticus
ENSMUSG00000020453	Patz1	100	92.743	ENSOANG00000014654	PATZ1	100	93.469	Ornithorhynchus_anatinus
ENSMUSG00000020453	Patz1	100	58.931	ENSORLG00020010937	patz1	100	58.931	Oryzias_latipes_hni
ENSMUSG00000020453	Patz1	100	58.297	ENSORLG00015007396	patz1	100	58.297	Oryzias_latipes_hsok
ENSMUSG00000020453	Patz1	100	57.755	ENSOMEG00000006636	patz1	100	57.755	Oryzias_melastigma
ENSMUSG00000020453	Patz1	100	98.544	ENSOGAG00000027905	PATZ1	100	98.544	Otolemur_garnettii
ENSMUSG00000020453	Patz1	100	99.127	ENSPPAG00000033227	PATZ1	100	99.127	Pan_paniscus
ENSMUSG00000020453	Patz1	100	98.908	ENSPPRG00000001573	PATZ1	100	98.908	Panthera_pardus
ENSMUSG00000020453	Patz1	86	98.651	ENSPTIG00000007937	PATZ1	91	98.651	Panthera_tigris_altaica
ENSMUSG00000020453	Patz1	100	99.127	ENSPTRG00000014268	PATZ1	100	99.127	Pan_troglodytes
ENSMUSG00000020453	Patz1	100	98.981	ENSPANG00000006821	PATZ1	100	98.981	Papio_anubis
ENSMUSG00000020453	Patz1	100	62.127	ENSPKIG00000019584	patz1	100	61.381	Paramormyrops_kingsleyae
ENSMUSG00000020453	Patz1	71	79.275	ENSPSIG00000016553	-	91	82.809	Pelodiscus_sinensis
ENSMUSG00000020453	Patz1	58	95.455	ENSPSIG00000011562	-	100	96.000	Pelodiscus_sinensis
ENSMUSG00000020453	Patz1	100	57.303	ENSPMGG00000010196	patz1	100	57.584	Periophthalmus_magnuspinnatus
ENSMUSG00000020453	Patz1	100	99.064	ENSPEMG00000005321	Patz1	100	99.064	Peromyscus_maniculatus_bairdii
ENSMUSG00000020453	Patz1	100	57.771	ENSPLAG00000010425	patz1	100	57.771	Poecilia_latipinna
ENSMUSG00000020453	Patz1	100	57.856	ENSPMEG00000000255	patz1	100	57.856	Poecilia_mexicana
ENSMUSG00000020453	Patz1	100	57.320	ENSPREG00000002440	patz1	100	57.320	Poecilia_reticulata
ENSMUSG00000020453	Patz1	100	98.836	ENSPPYG00000011732	PATZ1	100	98.836	Pongo_abelii
ENSMUSG00000020453	Patz1	100	98.596	ENSPCOG00000019729	PATZ1	100	98.596	Propithecus_coquereli
ENSMUSG00000020453	Patz1	100	98.690	ENSPVAG00000001749	PATZ1	100	98.690	Pteropus_vampyrus
ENSMUSG00000020453	Patz1	100	59.384	ENSPNYG00000013542	patz1	100	59.187	Pundamilia_nyererei
ENSMUSG00000020453	Patz1	84	60.454	ENSPNAG00000017222	patz1	99	59.486	Pygocentrus_nattereri
ENSMUSG00000020453	Patz1	100	98.981	ENSRBIG00000044231	PATZ1	100	98.981	Rhinopithecus_bieti
ENSMUSG00000020453	Patz1	100	98.981	ENSRROG00000037155	PATZ1	100	98.981	Rhinopithecus_roxellana
ENSMUSG00000020453	Patz1	100	98.981	ENSSBOG00000003894	PATZ1	100	98.981	Saimiri_boliviensis_boliviensis
ENSMUSG00000020453	Patz1	79	88.462	ENSSFOG00015013244	patz1	78	88.462	Scleropages_formosus
ENSMUSG00000020453	Patz1	100	86.629	ENSSPUG00000015298	PATZ1	100	86.344	Sphenodon_punctatus
ENSMUSG00000020453	Patz1	85	98.110	ENSSSCG00000010027	PATZ1	100	98.134	Sus_scrofa
ENSMUSG00000020453	Patz1	100	58.127	ENSTRUG00000015366	patz1	100	58.402	Takifugu_rubripes
ENSMUSG00000020453	Patz1	100	98.690	ENSTTRG00000010279	PATZ1	100	98.690	Tursiops_truncatus
ENSMUSG00000020453	Patz1	100	98.908	ENSUAMG00000015014	PATZ1	100	98.908	Ursus_americanus
ENSMUSG00000020453	Patz1	100	72.754	ENSXETG00000004190	patz1	100	72.029	Xenopus_tropicalis
ENSMUSG00000020453	Patz1	100	58.150	ENSXMAG00000015531	patz1	100	58.150	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	10669750.	IDA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	10669750.	IDA	Function
GO:0003677	DNA binding	16491076.	IDA	Function
GO:0003682	chromatin binding	16491076.	IDA	Function
GO:0005515	protein binding	15102471.16491076.	IPI	Function
GO:0005634	nucleus	16491076.18241078.	IDA	Component
GO:0005634	nucleus	10713105.	ISS	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	16491076.	IPI	Process
GO:0007283	spermatogenesis	18241078.	IMP	Process
GO:0008584	male gonad development	18241078.	IMP	Process
GO:0010468	regulation of gene expression	16491076.	IDA	Process
GO:0010596	negative regulation of endothelial cell migration	27983982.	IMP	Process
GO:0030217	T cell differentiation	16491076.	IDA	Process
GO:0045892	negative regulation of transcription, DNA-templated	10713105.	ISS	Process
GO:0045893	positive regulation of transcription, DNA-templated	10669750.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	10669750.	IDA	Process