EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020456 (Gene tree)
Gene ID: 18293
Gene Symbol: Ogdh
Alias: 2210403E04Rik|2210412K19Rik|alpha-ketoglutarate dehydrogenase|d1401
Full Name: oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 65010
Position: chr11: 6291633-6356642
Accession: 1098267
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000093350	-	4075	XM_006514582	ENSMUSP00000091041	1034 (aa)	XP_006514645	Q60597
ENSMUST00000101554	-	4106	-	ENSMUSP00000099090	1023 (aa)	-	Q60597
ENSMUST00000125929	-	779	-	-	- (aa)	-	-
ENSMUST00000135124	-	621	-	ENSMUSP00000117505	84 (aa)	-	Q5SVY1
ENSMUST00000003461	-	4127	XM_006514585	ENSMUSP00000003461	1023 (aa)	XP_006514648	Q60597
ENSMUST00000140765	-	702	-	ENSMUSP00000117323	123 (aa)	-	Q5SVY0
ENSMUST00000081894	-	4114	XM_006514586	ENSMUSP00000080569	1019 (aa)	XP_006514649	Z4YJV4

Gene Model

Click here to download ENSMUSG00000020456's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020456's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020456	Ogdh	98	61.785	FBgn0010352	Nc73EF	98	61.785	Drosophila_melanogaster
ENSMUSG00000020456	Ogdh	100	97.619	ENSG00000105953	OGDH	100	96.209	Homo_sapiens
ENSMUSG00000020456	Ogdh	95	46.613	YIL125W	KGD1	96	46.613	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004591	oxoglutarate dehydrogenase (succinyl-transferring) activity	21873635.	IBA	Function
GO:0004591	oxoglutarate dehydrogenase (succinyl-transferring) activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	17322295.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006096	glycolytic process	-	IEA	Process
GO:0006099	tricarboxylic acid cycle	21873635.	IBA	Process
GO:0006099	tricarboxylic acid cycle	-	ISO	Process
GO:0006103	2-oxoglutarate metabolic process	-	ISO	Process
GO:0006104	succinyl-CoA metabolic process	-	ISO	Process
GO:0006734	NADH metabolic process	-	ISO	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	-	IEA	Function
GO:0021695	cerebellar cortex development	16901643.	IEP	Process
GO:0021756	striatum development	16901643.	IEP	Process
GO:0021766	hippocampus development	16901643.	IEP	Process
GO:0021794	thalamus development	16901643.	IEP	Process
GO:0021860	pyramidal neuron development	16901643.	IEP	Process
GO:0022028	tangential migration from the subventricular zone to the olfactory bulb	16901643.	IEP	Process
GO:0030976	thiamine pyrophosphate binding	-	ISO	Function
GO:0031072	heat shock protein binding	-	ISO	Function
GO:0034602	oxoglutarate dehydrogenase (NAD+) activity	17322295.	IDA	Function
GO:0045252	oxoglutarate dehydrogenase complex	21873635.	IBA	Component
GO:0045252	oxoglutarate dehydrogenase complex	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0051087	chaperone binding	-	ISO	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0061034	olfactory bulb mitral cell layer development	16901643.	IEP	Process
GO:0106077	histone succinylation	-	ISO	Process