EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020458 (Gene tree)
Gene ID: 68585
Gene Symbol: Rtn4
Alias: 1110020G17Rik|C130026I10Rik|NOGO|NgA|Nogo-A|Nogo-B
Full Name: reticulon 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 51385
Position: chr11: 29692947-29744331
Accession: 1915835
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126162	-	907	-	-	- (aa)	-	-
ENSMUST00000170731	-	1272	-	ENSMUSP00000126413	356 (aa)	-	Q8BH78
ENSMUST00000078830	-	3615	-	ENSMUSP00000077875	356 (aa)	-	Q8BH78
ENSMUST00000156217	-	790	-	-	- (aa)	-	-
ENSMUST00000125735	-	566	-	-	- (aa)	-	-
ENSMUST00000102842	-	2257	-	ENSMUSP00000099906	375 (aa)	-	Q8BHF5
ENSMUST00000102843	-	4618	-	ENSMUSP00000099907	1162 (aa)	-	Q99P72
ENSMUST00000102841	-	4060	-	ENSMUSP00000099905	1046 (aa)	-	Q99P72
ENSMUST00000060992	-	1773	-	ENSMUSP00000053754	199 (aa)	-	Q99P72
ENSMUST00000141719	-	697	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020458's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05010	Alzheimer disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020458's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020458	Rtn4	100	97.487	ENSG00000115310	RTN4	100	97.487	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001525	angiogenesis	15034570.	IMP	Process
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0002523	leukocyte migration involved in inflammatory response	21183689.	IMP	Process
GO:0005515	protein binding	11201742.18986647.23909438.24453941.25917084.26301690.	IPI	Function
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005635	nuclear envelope	11126360.	ISS	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	12225863.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	26301690.27786289.	IDA	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0007029	endoplasmic reticulum organization	-	ISO	Process
GO:0007399	nervous system development	12225863.	IDA	Process
GO:0007413	axonal fasciculation	21873635.	IBA	Process
GO:0007413	axonal fasciculation	20573699.	IMP	Process
GO:0007413	axonal fasciculation	-	ISO	Process
GO:0010634	positive regulation of epithelial cell migration	-	ISO	Process
GO:0010977	negative regulation of neuron projection development	-	ISO	Process
GO:0014069	postsynaptic density	17114649.	IDA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0021801	cerebral cortex radial glia guided migration	20093372.	IMP	Process
GO:0022009	central nervous system vasculogenesis	23625008.	IMP	Process
GO:0030054	cell junction	-	ISO	Component
GO:0030176	integral component of endoplasmic reticulum membrane	-	ISO	Component
GO:0030176	integral component of endoplasmic reticulum membrane	10667797.	ISS	Component
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0030334	regulation of cell migration	-	ISO	Process
GO:0030424	axon	26718118.	IDA	Component
GO:0030517	negative regulation of axon extension	20573699.	IMP	Process
GO:0030517	negative regulation of axon extension	-	ISO	Process
GO:0030517	negative regulation of axon extension	10667797.	ISS	Process
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033601	positive regulation of mammary gland epithelial cell proliferation	-	ISO	Process
GO:0033603	positive regulation of dopamine secretion	-	ISO	Process
GO:0034165	positive regulation of toll-like receptor 9 signaling pathway	25917084.	IMP	Process
GO:0035022	positive regulation of Rac protein signal transduction	19805174.	IMP	Process
GO:0035441	cell migration involved in vasculogenesis	23625008.	IMP	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0042995	cell projection	15121177.	IDA	Component
GO:0043005	neuron projection	-	ISO	Component
GO:0043025	neuronal cell body	15121177.	IDA	Component
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043209	myelin sheath	-	ISO	Component
GO:0044294	dendritic growth cone	26718118.	IDA	Component
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045296	cadherin binding	-	ISO	Function
GO:0045665	negative regulation of neuron differentiation	-	ISO	Process
GO:0045687	positive regulation of glial cell differentiation	-	ISO	Process
GO:0045766	positive regulation of angiogenesis	19805174.	IMP	Process
GO:0048694	positive regulation of collateral sprouting of injured axon	12718855.	IMP	Process
GO:0050771	negative regulation of axonogenesis	-	ISO	Process
GO:0050821	protein stabilization	27353365.	IMP	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0051292	nuclear pore complex assembly	-	ISO	Process
GO:0051897	positive regulation of protein kinase B signaling	-	ISO	Process
GO:0051930	regulation of sensory perception of pain	-	ISO	Process
GO:0051960	regulation of nervous system development	20573699.	IMP	Process
GO:0060317	cardiac epithelial to mesenchymal transition	19156209.	IMP	Process
GO:0060907	positive regulation of macrophage cytokine production	19805174.	IMP	Process
GO:0061462	protein localization to lysosome	25917084.	IMP	Process
GO:0070571	negative regulation of neuron projection regeneration	-	ISO	Process
GO:0071456	cellular response to hypoxia	27763637.	IDA	Process
GO:0071782	endoplasmic reticulum tubular network	-	ISO	Component
GO:0071786	endoplasmic reticulum tubular network organization	-	ISO	Process
GO:0071787	endoplasmic reticulum tubular network formation	-	ISO	Process
GO:0090156	cellular sphingolipid homeostasis	26301690.	IMP	Process
GO:0098826	endoplasmic reticulum tubular network membrane	-	ISO	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099061	integral component of postsynaptic density membrane	-	ISO	Component
GO:0120078	cell adhesion involved in sprouting angiogenesis	-	ISO	Process
GO:1902624	positive regulation of neutrophil migration	21183689.	IMP	Process
GO:1903860	negative regulation of dendrite extension	12718855.	IMP	Process
GO:1905523	positive regulation of macrophage migration	19805174.	IMP	Process
GO:1905552	positive regulation of protein localization to endoplasmic reticulum	-	ISO	Process
GO:1905580	positive regulation of ERBB3 signaling pathway	-	ISO	Process
GO:1905653	positive regulation of artery morphogenesis	19805174.	IMP	Process
GO:1905943	negative regulation of formation of growth cone in injured axon	12718855.	IMP	Process
GO:1990809	endoplasmic reticulum tubular network membrane organization	-	ISO	Process
GO:2000172	regulation of branching morphogenesis of a nerve	20573699.	IMP	Process
GO:2000172	regulation of branching morphogenesis of a nerve	-	ISO	Process
GO:2000347	positive regulation of hepatocyte proliferation	23299899.	IMP	Process
GO:2001213	negative regulation of vasculogenesis	23625008.	IMP	Process