EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000020464 (Gene tree)
Gene ID
71701
Gene Symbol
Pnpt1
Alias
1200003F12Rik|PNPase|polynucleotide phosphorylase
Full Name
polyribonucleotide nucleotidyltransferase 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
31085 bases
Position
chr11:29130744-29161828
Accession
1918951
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000020756KH_1PF00013.295.1e-0711
ENSMUSP00000020756RNase_PHPF01138.211.1e-3812
ENSMUSP00000020756RNase_PHPF01138.211.1e-3822
ENSMUSP00000020756PNPasePF03726.143.9e-0711
ENSMUSP00000020756S1PF00575.237.1e-0611
ENSMUSP00000020756RNase_PH_CPF03725.156.3e-1611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000131527-587--- (aa)--
ENSMUST00000148173-459--- (aa)--
ENSMUST00000154924-3368--- (aa)--
ENSMUST00000020756-2707XM_006514813ENSMUSP00000020756783 (aa)XP_006514876Q8K1R3
Gene Model
Click here to download ENSMUSG00000020464's gene model file
Pathways
Pathway IDPathway NameSource
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020464's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000020464Pnpt19991.049ENSG00000138035PNPT19891.623Homo_sapiens
ENSMUSG00000020464Pnpt19476.510ENSAPOG00000005581PNPT19976.171Acanthochromis_polyacanthus
ENSMUSG00000020464Pnpt19990.568ENSAMEG00000003772PNPT19890.850Ailuropoda_melanoleuca
ENSMUSG00000020464Pnpt19277.210ENSACIG00000010140PNPT19977.210Amphilophus_citrinellus
ENSMUSG00000020464Pnpt19676.053ENSAOCG00000020109PNPT19975.686Amphiprion_ocellaris
ENSMUSG00000020464Pnpt19475.372ENSAPEG00000002299PNPT19975.372Amphiprion_percula
ENSMUSG00000020464Pnpt19378.601ENSATEG00000011164PNPT19578.601Anabas_testudineus
ENSMUSG00000020464Pnpt19380.680ENSAPLG00000002885PNPT19980.680Anas_platyrhynchos
ENSMUSG00000020464Pnpt19977.876ENSACAG00000003692PNPT19679.869Anolis_carolinensis
ENSMUSG00000020464Pnpt19991.097ENSANAG00000023709PNPT19791.361Aotus_nancymaae
ENSMUSG00000020464Pnpt19676.347ENSACLG00000024267PNPT19976.347Astatotilapia_calliptera
ENSMUSG00000020464Pnpt19178.116ENSAMXG00000042321PNPT19978.116Astyanax_mexicanus
ENSMUSG00000020464Pnpt19989.780ENSBTAG00000008909PNPT19889.700Bos_taurus
ENSMUSG00000020464Pnpt19241.379WBGene00015266BE0003N10.19641.379Caenorhabditis_elegans
ENSMUSG00000020464Pnpt19991.355ENSCJAG00000009740PNPT19791.864Callithrix_jacchus
ENSMUSG00000020464Pnpt19985.897ENSCAFG00000002891PNPT19885.863Canis_familiaris
ENSMUSG00000020464Pnpt19991.203ENSCAFG00020026841PNPT19791.230Canis_lupus_dingo
ENSMUSG00000020464Pnpt19985.899ENSCHIG00000025034PNPT19885.770Capra_hircus
ENSMUSG00000020464Pnpt19990.452ENSTSYG00000006536PNPT19890.470Carlito_syrichta
ENSMUSG00000020464Pnpt19171.053ENSCAPG00000013300PNPT19971.193Cavia_aperea
ENSMUSG00000020464Pnpt19989.548ENSCPOG00000011008PNPT19889.687Cavia_porcellus
ENSMUSG00000020464Pnpt19990.452ENSCCAG00000037909PNPT19790.838Cebus_capucinus
ENSMUSG00000020464Pnpt19968.475ENSCATG00000036442-9768.497Cercocebus_atys
ENSMUSG00000020464Pnpt19989.642ENSCATG00000031551PNPT19890.314Cercocebus_atys
ENSMUSG00000020464Pnpt19990.323ENSCLAG00000006240PNPT19890.339Chinchilla_lanigera
ENSMUSG00000020464Pnpt19990.805ENSCSAG00000014324PNPT19891.503Chlorocebus_sabaeus
ENSMUSG00000020464Pnpt19279.750ENSCHOG00000007360PNPT110079.726Choloepus_hoffmanni
ENSMUSG00000020464Pnpt19979.172ENSCPBG00000020856PNPT19581.770Chrysemys_picta_bellii
ENSMUSG00000020464Pnpt19970.423ENSCANG00000028159-9871.035Colobus_angolensis_palliatus
ENSMUSG00000020464Pnpt19990.409ENSCANG00000034019PNPT19891.099Colobus_angolensis_palliatus
ENSMUSG00000020464Pnpt19992.574ENSCGRG00001012245Pnpt19793.734Cricetulus_griseus_chok1gshd
ENSMUSG00000020464Pnpt19993.161ENSCGRG00000007624Pnpt19893.611Cricetulus_griseus_crigri
ENSMUSG00000020464Pnpt19174.543ENSCSEG00000000809PNPT19974.543Cynoglossus_semilaevis
ENSMUSG00000020464Pnpt17780.072ENSCVAG00000010037PNPT19680.072Cyprinodon_variegatus
ENSMUSG00000020464Pnpt19989.548ENSDNOG00000046753PNPT19889.583Dasypus_novemcinctus
ENSMUSG00000020464Pnpt19990.815ENSDORG00000011409Pnpt19891.384Dipodomys_ordii
ENSMUSG00000020464Pnpt19356.250FBgn0039846PNPase9556.250Drosophila_melanogaster
ENSMUSG00000020464Pnpt19966.753ENSETEG00000001582-9866.970Echinops_telfairi
ENSMUSG00000020464Pnpt19154.444ENSEBUG00000010305PNPT19454.444Eptatretus_burgeri
ENSMUSG00000020464Pnpt19991.462ENSEASG00005001974PNPT19891.253Equus_asinus_asinus
ENSMUSG00000020464Pnpt19991.591ENSECAG00000020058PNPT19892.807Equus_caballus
ENSMUSG00000020464Pnpt19980.284ENSEEUG00000015610PNPT19780.834Erinaceus_europaeus
ENSMUSG00000020464Pnpt19576.604ENSELUG00000004795PNPT19876.431Esox_lucius
ENSMUSG00000020464Pnpt19991.074ENSFCAG00000013236PNPT19890.992Felis_catus
ENSMUSG00000020464Pnpt19380.193ENSFALG00000011214PNPT19980.193Ficedula_albicollis
ENSMUSG00000020464Pnpt19989.642ENSFDAG00000017446PNPT19889.948Fukomys_damarensis
ENSMUSG00000020464Pnpt19676.260ENSFHEG00000006495PNPT19877.732Fundulus_heteroclitus
ENSMUSG00000020464Pnpt19474.290ENSGMOG00000006805PNPT19674.290Gadus_morhua
ENSMUSG00000020464Pnpt19480.597ENSGALG00000043545PNPT19280.597Gallus_gallus
ENSMUSG00000020464Pnpt19676.127ENSGAFG00000019681PNPT19876.870Gambusia_affinis
ENSMUSG00000020464Pnpt19674.934ENSGACG00000010840PNPT19874.934Gasterosteus_aculeatus
ENSMUSG00000020464Pnpt19991.049ENSGGOG00000006867PNPT19891.623Gorilla_gorilla
ENSMUSG00000020464Pnpt19976.903ENSGGOG00000041496-9877.487Gorilla_gorilla
ENSMUSG00000020464Pnpt19676.084ENSHBUG00000013041PNPT19976.184Haplochromis_burtoni
ENSMUSG00000020464Pnpt19990.427ENSHGLG00000007480PNPT19890.209Heterocephalus_glaber_female
ENSMUSG00000020464Pnpt18982.665ENSHGLG00000010054-9086.574Heterocephalus_glaber_female
ENSMUSG00000020464Pnpt19990.427ENSHGLG00100010920PNPT19890.209Heterocephalus_glaber_male
ENSMUSG00000020464Pnpt19977.490ENSHGLG00100007397-9680.191Heterocephalus_glaber_male
ENSMUSG00000020464Pnpt19463.723ENSHCOG00000002817PNPT110063.723Hippocampus_comes
ENSMUSG00000020464Pnpt19377.534ENSIPUG00000014624PNPT19977.534Ictalurus_punctatus
ENSMUSG00000020464Pnpt19990.665ENSSTOG00000006304PNPT19891.123Ictidomys_tridecemlineatus
ENSMUSG00000020464Pnpt19990.710ENSJJAG00000019227Pnpt19891.384Jaculus_jaculus
ENSMUSG00000020464Pnpt19676.393ENSKMAG00000017389PNPT19876.393Kryptolebias_marmoratus
ENSMUSG00000020464Pnpt19576.954ENSLBEG00000027692PNPT19875.962Labrus_bergylta
ENSMUSG00000020464Pnpt19079.549ENSLACG00000011059PNPT19980.780Latimeria_chalumnae
ENSMUSG00000020464Pnpt19576.502ENSLOCG00000015375PNPT19476.502Lepisosteus_oculatus
ENSMUSG00000020464Pnpt19982.519ENSLAFG00000021462PNPT19882.445Loxodonta_africana
ENSMUSG00000020464Pnpt19990.793ENSMFAG00000001927PNPT19891.623Macaca_fascicularis
ENSMUSG00000020464Pnpt17992.647ENSMMUG00000007003PNPT19992.647Macaca_mulatta
ENSMUSG00000020464Pnpt19392.582ENSMNEG00000038589PNPT19992.582Macaca_nemestrina
ENSMUSG00000020464Pnpt19987.852ENSMLEG00000038706PNPT19788.482Mandrillus_leucophaeus
ENSMUSG00000020464Pnpt19966.538ENSMLEG00000028524-9767.192Mandrillus_leucophaeus
ENSMUSG00000020464Pnpt19970.356ENSMAMG00000021954PNPT19672.922Mastacembelus_armatus
ENSMUSG00000020464Pnpt19676.347ENSMZEG00005027363PNPT19976.347Maylandia_zebra
ENSMUSG00000020464Pnpt19380.328ENSMGAG00000001952PNPT19980.328Meleagris_gallopavo
ENSMUSG00000020464Pnpt110092.785ENSMAUG00000013652Pnpt19794.125Mesocricetus_auratus
ENSMUSG00000020464Pnpt19990.665ENSMICG00000009369PNPT19890.992Microcebus_murinus
ENSMUSG00000020464Pnpt19993.686ENSMOCG00000002820Pnpt19893.904Microtus_ochrogaster
ENSMUSG00000020464Pnpt19273.793ENSMMOG00000007480PNPT19973.793Mola_mola
ENSMUSG00000020464Pnpt19981.772ENSMODG00000001984PNPT19683.533Monodelphis_domestica
ENSMUSG00000020464Pnpt19875.032ENSMALG00000018484PNPT19976.184Monopterus_albus
ENSMUSG00000020464Pnpt110098.852MGP_CAROLIEiJ_G0016153Pnpt110098.852Mus_caroli
ENSMUSG00000020464Pnpt110097.577MGP_PahariEiJ_G0016737Pnpt110097.577Mus_pahari
ENSMUSG00000020464Pnpt110099.235MGP_SPRETEiJ_G0016996Pnpt110099.333Mus_spretus
ENSMUSG00000020464Pnpt19990.710ENSMPUG00000002353PNPT19790.731Mustela_putorius_furo
ENSMUSG00000020464Pnpt19989.691ENSMLUG00000003886PNPT19889.883Myotis_lucifugus
ENSMUSG00000020464Pnpt19993.532ENSNGAG00000020856-9893.603Nannospalax_galili
ENSMUSG00000020464Pnpt17867.652ENSNBRG00000012517PNPT18776.059Neolamprologus_brichardi
ENSMUSG00000020464Pnpt19987.980ENSNLEG00000009354PNPT19888.613Nomascus_leucogenys
ENSMUSG00000020464Pnpt19181.090ENSNLEG00000003327-9781.090Nomascus_leucogenys
ENSMUSG00000020464Pnpt19987.468ENSOPRG00000010232-9887.630Ochotona_princeps
ENSMUSG00000020464Pnpt19989.935ENSODEG00000012137PNPT19890.078Octodon_degus
ENSMUSG00000020464Pnpt19974.936ENSONIG00000000983PNPT19875.584Oreochromis_niloticus
ENSMUSG00000020464Pnpt19085.613ENSOANG00000011178PNPT19985.613Ornithorhynchus_anatinus
ENSMUSG00000020464Pnpt19991.366ENSOCUG00000006889PNPT19891.395Oryctolagus_cuniculus
ENSMUSG00000020464Pnpt19974.300ENSORLG00000004335PNPT19675.690Oryzias_latipes
ENSMUSG00000020464Pnpt19974.427ENSORLG00015018951PNPT19978.099Oryzias_latipes_hsok
ENSMUSG00000020464Pnpt19988.593ENSOGAG00000009840PNPT19888.875Otolemur_garnettii
ENSMUSG00000020464Pnpt19989.406ENSOARG00000002164PNPT19889.309Ovis_aries
ENSMUSG00000020464Pnpt19974.041ENSPPAG00000040514-9774.607Pan_paniscus
ENSMUSG00000020464Pnpt19092.563ENSPPAG00000024705PNPT19792.563Pan_paniscus
ENSMUSG00000020464Pnpt19991.591ENSPPRG00000001366PNPT19891.514Panthera_pardus
ENSMUSG00000020464Pnpt19991.721ENSPTIG00000014915PNPT19891.645Panthera_tigris_altaica
ENSMUSG00000020464Pnpt19873.896ENSPTRG00000051411-9973.953Pan_troglodytes
ENSMUSG00000020464Pnpt19991.049ENSPTRG00000011934PNPT19891.623Pan_troglodytes
ENSMUSG00000020464Pnpt19991.049ENSPANG00000022846PNPT19891.754Papio_anubis
ENSMUSG00000020464Pnpt19973.174ENSPKIG00000021612PNPT19974.140Paramormyrops_kingsleyae
ENSMUSG00000020464Pnpt19879.896ENSPSIG00000013120PNPT19682.273Pelodiscus_sinensis
ENSMUSG00000020464Pnpt110092.875ENSPEMG00000004284Pnpt19893.506Peromyscus_maniculatus_bairdii
ENSMUSG00000020464Pnpt19273.554ENSPMAG00000008932PNPT19873.554Petromyzon_marinus
ENSMUSG00000020464Pnpt19983.290ENSPCIG00000010236PNPT19784.031Phascolarctos_cinereus
ENSMUSG00000020464Pnpt19775.524ENSPFOG00000010229PNPT19975.524Poecilia_formosa
ENSMUSG00000020464Pnpt19775.654ENSPLAG00000009008PNPT19975.654Poecilia_latipinna
ENSMUSG00000020464Pnpt19775.524ENSPMEG00000004192PNPT19977.383Poecilia_mexicana
ENSMUSG00000020464Pnpt19177.685ENSPREG00000003072PNPT19877.685Poecilia_reticulata
ENSMUSG00000020464Pnpt19990.537ENSPPYG00000012399PNPT19891.099Pongo_abelii
ENSMUSG00000020464Pnpt19280.583ENSPCAG00000010806PNPT19980.468Procavia_capensis
ENSMUSG00000020464Pnpt19280.360ENSPCOG00000015664PNPT19980.360Propithecus_coquereli
ENSMUSG00000020464Pnpt17984.579ENSPVAG00000005379PNPT18775.934Pteropus_vampyrus
ENSMUSG00000020464Pnpt19375.890ENSPNYG00000000363PNPT19775.890Pundamilia_nyererei
ENSMUSG00000020464Pnpt19579.840ENSPNAG00000010891PNPT19779.840Pygocentrus_nattereri
ENSMUSG00000020464Pnpt19796.570ENSRNOG00000003600Pnpt19896.349Rattus_norvegicus
ENSMUSG00000020464Pnpt19990.537ENSRBIG00000043016PNPT19891.230Rhinopithecus_bieti
ENSMUSG00000020464Pnpt19990.409ENSRROG00000040537PNPT19891.099Rhinopithecus_roxellana
ENSMUSG00000020464Pnpt19988.774ENSSBOG00000032574PNPT19992.593Saimiri_boliviensis_boliviensis
ENSMUSG00000020464Pnpt16287.064ENSSHAG00000014040PNPT19986.992Sarcophilus_harrisii
ENSMUSG00000020464Pnpt19369.368ENSSFOG00015017596PNPT19569.368Scleropages_formosus
ENSMUSG00000020464Pnpt19476.049ENSSMAG00000018471PNPT19975.205Scophthalmus_maximus
ENSMUSG00000020464Pnpt19577.151ENSSDUG00000018584PNPT19777.151Seriola_dumerili
ENSMUSG00000020464Pnpt19577.688ENSSLDG00000023385PNPT19976.323Seriola_lalandi_dorsalis
ENSMUSG00000020464Pnpt18684.082ENSSARG00000012819PNPT18583.903Sorex_araneus
ENSMUSG00000020464Pnpt19976.658ENSSPUG00000011785PNPT19778.261Sphenodon_punctatus
ENSMUSG00000020464Pnpt19574.967ENSSPAG00000016880PNPT19875.035Stegastes_partitus
ENSMUSG00000020464Pnpt19990.556ENSSSCG00000031882PNPT19890.339Sus_scrofa
ENSMUSG00000020464Pnpt19380.247ENSTGUG00000006908PNPT19980.247Taeniopygia_guttata
ENSMUSG00000020464Pnpt19474.899ENSTRUG00000005495PNPT19874.211Takifugu_rubripes
ENSMUSG00000020464Pnpt19376.301ENSTNIG00000007460PNPT19975.335Tetraodon_nigroviridis
ENSMUSG00000020464Pnpt19961.133ENSTBEG00000010788PNPT19761.227Tupaia_belangeri
ENSMUSG00000020464Pnpt19391.862ENSTTRG00000000029PNPT19991.862Tursiops_truncatus
ENSMUSG00000020464Pnpt19294.070ENSUAMG00000017133PNPT19993.013Ursus_americanus
ENSMUSG00000020464Pnpt19990.815ENSUMAG00000018844PNPT19690.838Ursus_maritimus
ENSMUSG00000020464Pnpt19981.677ENSVPAG00000007097PNPT19781.806Vicugna_pacos
ENSMUSG00000020464Pnpt19990.815ENSVVUG00000010034PNPT19790.838Vulpes_vulpes
ENSMUSG00000020464Pnpt19579.217ENSXETG00000006075pnpt19479.217Xenopus_tropicalis
ENSMUSG00000020464Pnpt19278.056ENSXCOG00000013381PNPT19778.056Xiphophorus_couchianus
ENSMUSG00000020464Pnpt19676.127ENSXMAG00000016907PNPT19878.194Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:00001753'-5'-exoribonuclease activity21873635.IBAFunction
GO:00001753'-5'-exoribonuclease activity-ISOFunction
GO:0000957mitochondrial RNA catabolic process21873635.IBAProcess
GO:0000957mitochondrial RNA catabolic process-ISOProcess
GO:0000958mitochondrial mRNA catabolic process21873635.IBAProcess
GO:0000958mitochondrial mRNA catabolic process20691904.IMPProcess
GO:0000958mitochondrial mRNA catabolic process-ISOProcess
GO:0000962positive regulation of mitochondrial RNA catabolic process-ISOProcess
GO:0000963mitochondrial RNA processing21873635.IBAProcess
GO:0000964mitochondrial RNA 5'-end processing-ISOProcess
GO:0000965mitochondrial RNA 3'-end processing21873635.IBAProcess
GO:0000965mitochondrial RNA 3'-end processing-ISOProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0004518nuclease activity-IEAFunction
GO:0004527exonuclease activity-IEAFunction
GO:0004654polyribonucleotide nucleotidyltransferase activity21873635.IBAFunction
GO:0004654polyribonucleotide nucleotidyltransferase activity-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion18614015.HDAComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion16966381.IDAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005758mitochondrial intermembrane space16966381.IDAComponent
GO:0005758mitochondrial intermembrane space-ISOComponent
GO:0005789endoplasmic reticulum membrane-ISOComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0006401RNA catabolic process21873635.IBAProcess
GO:0006401RNA catabolic process-ISOProcess
GO:0006402mRNA catabolic process-ISOProcess
GO:0008266poly(U) RNA binding-ISOFunction
GO:0016020membrane-IEAComponent
GO:0016740transferase activity-IEAFunction
GO:0016779nucleotidyltransferase activity-IEAFunction
GO:0016787hydrolase activity-IEAFunction
GO:0034046poly(G) binding-ISOFunction
GO:0034599cellular response to oxidative stress-ISOProcess
GO:0035198miRNA binding-ISOFunction
GO:0035458cellular response to interferon-beta-ISOProcess
GO:0035927RNA import into mitochondrion-ISOProcess
GO:0035928rRNA import into mitochondrion-ISOProcess
GO:0042788polysomal ribosome-ISOComponent
GO:0043457regulation of cellular respiration16966381.20691904.IMPProcess
GO:0043631RNA polyadenylation-ISOProcess
GO:0045025mitochondrial degradosome-ISOComponent
GO:0045926negative regulation of growth-ISOProcess
GO:0051260protein homooligomerization-ISOProcess
GO:0061014positive regulation of mRNA catabolic process-ISOProcess
GO:0070207protein homotrimerization-ISOProcess
GO:0070584mitochondrion morphogenesis16966381.20691904.IMPProcess
GO:0071042nuclear polyadenylation-dependent mRNA catabolic process-ISOProcess
GO:0071850mitotic cell cycle arrest-ISOProcess
GO:0097222mitochondrial mRNA polyadenylation-ISOProcess
GO:2000627positive regulation of miRNA catabolic process-ISOProcess
GO:2000772regulation of cellular senescence-ISOProcess

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