EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020561 (Gene tree)
Gene ID: 28071
Gene Symbol: Twistnb
Alias: 2810024J17Rik|D16Wsu83e
Full Name: twist basic helix-loop-helix transcription factor 1 neighbor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 11758 bases
Position: chr12:33429635-33441392
Accession: 106292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000020877	SHS2_Rpb7-N	PF03876.17	3.7e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219758	-	935	-	-	- (aa)	-	-
ENSMUST00000219769	-	405	-	-	- (aa)	-	-
ENSMUST00000218748	-	316	-	-	- (aa)	-	-
ENSMUST00000020877	-	4325	-	ENSMUSP00000020877	330 (aa)	-	Q78WZ7

Gene Model

Click here to download ENSMUSG00000020561's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020561	Twistnb	99	75.455	ENSG00000105849	TWISTNB	96	75.227	Homo_sapiens
ENSMUSG00000020561	Twistnb	65	53.052	ENSAPOG00000011796	twistnb	51	55.670	Acanthochromis_polyacanthus
ENSMUSG00000020561	Twistnb	100	65.104	ENSAMEG00000008558	TWISTNB	74	87.129	Ailuropoda_melanoleuca
ENSMUSG00000020561	Twistnb	71	49.573	ENSACIG00000020400	twistnb	53	54.545	Amphilophus_citrinellus
ENSMUSG00000020561	Twistnb	51	63.905	ENSACAG00000011817	TWISTNB	86	63.905	Anolis_carolinensis
ENSMUSG00000020561	Twistnb	99	75.455	ENSANAG00000026418	TWISTNB	99	72.997	Aotus_nancymaae
ENSMUSG00000020561	Twistnb	60	53.769	ENSAMXG00000035868	twistnb	59	54.639	Astyanax_mexicanus
ENSMUSG00000020561	Twistnb	100	73.134	ENSBTAG00000006721	TWISTNB	99	70.746	Bos_taurus
ENSMUSG00000020561	Twistnb	99	76.133	ENSCJAG00000001148	TWISTNB	99	74.926	Callithrix_jacchus
ENSMUSG00000020561	Twistnb	100	69.942	ENSCAFG00000002511	TWISTNB	99	72.254	Canis_familiaris
ENSMUSG00000020561	Twistnb	100	70.760	ENSCAFG00020002140	TWISTNB	92	73.099	Canis_lupus_dingo
ENSMUSG00000020561	Twistnb	94	75.000	ENSCHIG00000024078	TWISTNB	99	71.217	Capra_hircus
ENSMUSG00000020561	Twistnb	100	73.964	ENSTSYG00000001471	TWISTNB	99	72.781	Carlito_syrichta
ENSMUSG00000020561	Twistnb	100	76.331	ENSCPOG00000031651	TWISTNB	99	72.781	Cavia_porcellus
ENSMUSG00000020561	Twistnb	99	75.684	ENSCCAG00000026416	TWISTNB	99	75.074	Cebus_capucinus
ENSMUSG00000020561	Twistnb	99	74.545	ENSCATG00000035621	TWISTNB	96	74.320	Cercocebus_atys
ENSMUSG00000020561	Twistnb	100	76.696	ENSCLAG00000012696	TWISTNB	99	76.331	Chinchilla_lanigera
ENSMUSG00000020561	Twistnb	99	74.848	ENSCSAG00000013544	TWISTNB	96	74.622	Chlorocebus_sabaeus
ENSMUSG00000020561	Twistnb	79	83.333	ENSCHOG00000006034	TWISTNB	66	83.333	Choloepus_hoffmanni
ENSMUSG00000020561	Twistnb	89	61.486	ENSCPBG00000000367	TWISTNB	91	60.000	Chrysemys_picta_bellii
ENSMUSG00000020561	Twistnb	99	74.848	ENSCANG00000038759	TWISTNB	96	74.622	Colobus_angolensis_palliatus
ENSMUSG00000020561	Twistnb	100	82.727	ENSCGRG00001000499	Twistnb	100	80.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000020561	Twistnb	100	72.619	ENSDNOG00000006438	-	99	72.700	Dasypus_novemcinctus
ENSMUSG00000020561	Twistnb	93	74.434	ENSDORG00000007795	Twistnb	99	73.913	Dipodomys_ordii
ENSMUSG00000020561	Twistnb	100	76.558	ENSEASG00005021702	TWISTNB	95	76.261	Equus_asinus_asinus
ENSMUSG00000020561	Twistnb	100	76.558	ENSECAG00000014563	TWISTNB	95	76.261	Equus_caballus
ENSMUSG00000020561	Twistnb	91	46.226	ENSELUG00000000098	TWISTNB	53	58.115	Esox_lucius
ENSMUSG00000020561	Twistnb	98	78.328	ENSFCAG00000025987	TWISTNB	99	76.190	Felis_catus
ENSMUSG00000020561	Twistnb	79	51.799	ENSFALG00000009761	TWISTNB	89	50.538	Ficedula_albicollis
ENSMUSG00000020561	Twistnb	98	76.292	ENSFDAG00000017368	TWISTNB	99	75.371	Fukomys_damarensis
ENSMUSG00000020561	Twistnb	85	58.681	ENSGALG00000010863	TWISTNB	69	58.511	Gallus_gallus
ENSMUSG00000020561	Twistnb	61	51.923	ENSGACG00000006425	twistnb	66	55.747	Gasterosteus_aculeatus
ENSMUSG00000020561	Twistnb	99	75.758	ENSGGOG00000026888	TWISTNB	96	75.529	Gorilla_gorilla
ENSMUSG00000020561	Twistnb	100	76.331	ENSHGLG00000010976	TWISTNB	99	76.261	Heterocephalus_glaber_female
ENSMUSG00000020561	Twistnb	98	77.914	ENSHGLG00100005410	TWISTNB	99	76.261	Heterocephalus_glaber_male
ENSMUSG00000020561	Twistnb	61	51.244	ENSIPUG00000004117	twistnb	55	51.244	Ictalurus_punctatus
ENSMUSG00000020561	Twistnb	100	78.274	ENSSTOG00000022702	TWISTNB	92	77.679	Ictidomys_tridecemlineatus
ENSMUSG00000020561	Twistnb	99	73.353	ENSJJAG00000015887	Twistnb	99	73.353	Jaculus_jaculus
ENSMUSG00000020561	Twistnb	53	58.621	ENSKMAG00000001591	twistnb	50	57.297	Kryptolebias_marmoratus
ENSMUSG00000020561	Twistnb	90	52.396	ENSLACG00000010508	TWISTNB	52	69.780	Latimeria_chalumnae
ENSMUSG00000020561	Twistnb	66	58.065	ENSLOCG00000011399	twistnb	60	60.804	Lepisosteus_oculatus
ENSMUSG00000020561	Twistnb	100	74.777	ENSLAFG00000008755	TWISTNB	100	73.591	Loxodonta_africana
ENSMUSG00000020561	Twistnb	99	74.848	ENSMFAG00000045328	TWISTNB	96	74.622	Macaca_fascicularis
ENSMUSG00000020561	Twistnb	99	74.848	ENSMMUG00000009609	TWISTNB	96	74.622	Macaca_mulatta
ENSMUSG00000020561	Twistnb	99	74.242	ENSMNEG00000041159	TWISTNB	96	74.018	Macaca_nemestrina
ENSMUSG00000020561	Twistnb	99	74.848	ENSMLEG00000042783	TWISTNB	96	74.622	Mandrillus_leucophaeus
ENSMUSG00000020561	Twistnb	100	77.778	ENSMICG00000036489	TWISTNB	99	77.477	Microcebus_murinus
ENSMUSG00000020561	Twistnb	98	83.851	ENSMOCG00000003458	Twistnb	98	83.750	Microtus_ochrogaster
ENSMUSG00000020561	Twistnb	85	59.507	ENSMODG00000001402	-	64	59.661	Monodelphis_domestica
ENSMUSG00000020561	Twistnb	58	54.737	ENSMALG00000016407	twistnb	50	54.737	Monopterus_albus
ENSMUSG00000020561	Twistnb	100	97.281	MGP_CAROLIEiJ_G0017692	Twistnb	100	97.281	Mus_caroli
ENSMUSG00000020561	Twistnb	100	93.636	MGP_PahariEiJ_G0029450	Twistnb	100	93.636	Mus_pahari
ENSMUSG00000020561	Twistnb	100	98.788	MGP_SPRETEiJ_G0018534	Twistnb	100	98.788	Mus_spretus
ENSMUSG00000020561	Twistnb	100	74.627	ENSMPUG00000013948	TWISTNB	93	74.405	Mustela_putorius_furo
ENSMUSG00000020561	Twistnb	92	71.061	ENSMLUG00000008848	TWISTNB	99	72.026	Myotis_lucifugus
ENSMUSG00000020561	Twistnb	61	88.500	ENSNGAG00000022455	Twistnb	99	88.500	Nannospalax_galili
ENSMUSG00000020561	Twistnb	58	55.440	ENSNBRG00000008652	twistnb	52	55.440	Neolamprologus_brichardi
ENSMUSG00000020561	Twistnb	94	76.603	ENSNLEG00000035755	TWISTNB	91	76.677	Nomascus_leucogenys
ENSMUSG00000020561	Twistnb	100	70.796	ENSOPRG00000016109	TWISTNB	98	68.437	Ochotona_princeps
ENSMUSG00000020561	Twistnb	100	74.926	ENSODEG00000007222	TWISTNB	99	73.373	Octodon_degus
ENSMUSG00000020561	Twistnb	88	45.455	ENSORLG00020002579	twistnb	53	55.941	Oryzias_latipes_hni
ENSMUSG00000020561	Twistnb	99	76.364	ENSOGAG00000009189	TWISTNB	96	76.061	Otolemur_garnettii
ENSMUSG00000020561	Twistnb	94	74.920	ENSOARG00000009803	TWISTNB	98	70.833	Ovis_aries
ENSMUSG00000020561	Twistnb	99	75.758	ENSPPAG00000034623	TWISTNB	96	75.227	Pan_paniscus
ENSMUSG00000020561	Twistnb	98	77.399	ENSPPRG00000005877	TWISTNB	99	74.107	Panthera_pardus
ENSMUSG00000020561	Twistnb	89	76.333	ENSPTIG00000021539	TWISTNB	99	76.846	Panthera_tigris_altaica
ENSMUSG00000020561	Twistnb	99	75.758	ENSPTRG00000018962	TWISTNB	96	75.529	Pan_troglodytes
ENSMUSG00000020561	Twistnb	99	74.545	ENSPANG00000015736	TWISTNB	96	74.320	Papio_anubis
ENSMUSG00000020561	Twistnb	62	58.824	ENSPKIG00000025635	twistnb	51	61.290	Paramormyrops_kingsleyae
ENSMUSG00000020561	Twistnb	85	57.801	ENSPCIG00000017456	TWISTNB	88	57.823	Phascolarctos_cinereus
ENSMUSG00000020561	Twistnb	99	75.152	ENSPPYG00000017752	TWISTNB	96	74.848	Pongo_abelii
ENSMUSG00000020561	Twistnb	99	75.075	ENSPCOG00000017601	TWISTNB	98	76.276	Propithecus_coquereli
ENSMUSG00000020561	Twistnb	99	69.436	ENSPVAG00000015574	TWISTNB	98	71.006	Pteropus_vampyrus
ENSMUSG00000020561	Twistnb	58	56.701	ENSPNYG00000002674	twistnb	51	56.701	Pundamilia_nyererei
ENSMUSG00000020561	Twistnb	92	42.056	ENSPNAG00000011956	twistnb	51	55.615	Pygocentrus_nattereri
ENSMUSG00000020561	Twistnb	98	90.373	ENSRNOG00000010750	Twistnb	100	87.888	Rattus_norvegicus
ENSMUSG00000020561	Twistnb	99	74.848	ENSRBIG00000043007	TWISTNB	95	74.622	Rhinopithecus_bieti
ENSMUSG00000020561	Twistnb	99	74.848	ENSRROG00000040155	TWISTNB	96	74.622	Rhinopithecus_roxellana
ENSMUSG00000020561	Twistnb	99	74.545	ENSSBOG00000023188	TWISTNB	99	73.964	Saimiri_boliviensis_boliviensis
ENSMUSG00000020561	Twistnb	50	60.241	ENSSFOG00015012788	twistnb	52	59.394	Scleropages_formosus
ENSMUSG00000020561	Twistnb	91	50.482	ENSSPUG00000007595	TWISTNB	93	49.829	Sphenodon_punctatus
ENSMUSG00000020561	Twistnb	100	74.251	ENSSSCG00000025298	TWISTNB	99	73.952	Sus_scrofa
ENSMUSG00000020561	Twistnb	92	42.991	ENSTNIG00000017778	twistnb	62	51.471	Tetraodon_nigroviridis
ENSMUSG00000020561	Twistnb	100	74.627	ENSTBEG00000003554	TWISTNB	98	72.537	Tupaia_belangeri
ENSMUSG00000020561	Twistnb	100	75.821	ENSUAMG00000017593	TWISTNB	99	75.224	Ursus_americanus
ENSMUSG00000020561	Twistnb	100	75.821	ENSUMAG00000022203	TWISTNB	99	75.224	Ursus_maritimus
ENSMUSG00000020561	Twistnb	100	71.345	ENSVVUG00000008386	TWISTNB	99	73.392	Vulpes_vulpes
ENSMUSG00000020561	Twistnb	91	43.234	ENSXCOG00000020199	twistnb	78	43.493	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process