EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020661 (Gene tree)
Gene ID: 13435
Gene Symbol: Dnmt3a
Alias: -
Full Name: DNA methyltransferase 3A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 108437
Position: chr12: 3806007-3914443
Accession: 1261827
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174483	-	2613	-	ENSMUSP00000133938	72 (aa)	-	G3UY43
ENSMUST00000172749	-	550	-	ENSMUSP00000134567	184 (aa)	-	G3UZN5
ENSMUST00000174102	-	555	-	ENSMUSP00000134480	140 (aa)	-	G3UZF8
ENSMUST00000174774	-	814	-	ENSMUSP00000134529	181 (aa)	-	G3UZK0
ENSMUST00000111186	-	5424	-	ENSMUSP00000106817	689 (aa)	-	O88508
ENSMUST00000174272	-	369	-	-	- (aa)	-	-
ENSMUST00000173197	-	654	-	ENSMUSP00000133567	94 (aa)	-	G3UX63
ENSMUST00000172913	-	501	-	ENSMUSP00000134496	72 (aa)	-	G3UZH2
ENSMUST00000173700	-	4014	-	-	- (aa)	-	-
ENSMUST00000172689	-	2328	-	ENSMUSP00000133543	689 (aa)	-	O88508
ENSMUST00000172509	-	1115	-	ENSMUSP00000133869	332 (aa)	-	G3UXY2
ENSMUST00000085826	-	1944	-	-	- (aa)	-	-
ENSMUST00000172816	-	467	-	ENSMUSP00000134632	41 (aa)	-	G3UZU0
ENSMUST00000174733	-	502	-	ENSMUSP00000134492	107 (aa)	-	G3UZG8
ENSMUST00000020991	-	9685	XM_006514953	ENSMUSP00000020991	908 (aa)	XP_006515016	O88508
ENSMUST00000174817	-	8737	-	ENSMUSP00000134009	908 (aa)	-	O88508
ENSMUST00000172879	-	732	-	ENSMUSP00000134689	34 (aa)	-	G3UZY8
ENSMUST00000172719	-	827	-	ENSMUSP00000133501	193 (aa)	-	G3UX07

Gene Model

Click here to download ENSMUSG00000020661's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00270	Cysteine and methionine metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu05206	MicroRNAs in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020661's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	16322236.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000775	chromosome, centromeric region	15456878.	IDA	Component
GO:0000791	euchromatin	-	ISO	Component
GO:0000792	heterochromatin	16322236.	IDA	Component
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001741	XY body	20577743.	IDA	Component
GO:0003677	DNA binding	11399089.	IDA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003682	chromatin binding	16322236.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003886	DNA (cytosine-5-)-methyltransferase activity	9662389.11399089.	IDA	Function
GO:0003886	DNA (cytosine-5-)-methyltransferase activity	17938196.	IGI	Function
GO:0003886	DNA (cytosine-5-)-methyltransferase activity	-	ISO	Function
GO:0005515	protein binding	14752048.16322236.16395332.17687327.17713477.17938196.18953337.22516971.24074865.	IPI	Function
GO:0005634	nucleus	14752048.20577743.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005720	nuclear heterochromatin	11934864.	IDA	Component
GO:0005737	cytoplasm	15739230.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006306	DNA methylation	11399089.11934864.	IDA	Process
GO:0006306	DNA methylation	17938196.	IGI	Process
GO:0006306	DNA methylation	-	ISO	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006346	methylation-dependent chromatin silencing	16322236.	IDA	Process
GO:0006346	methylation-dependent chromatin silencing	17938196.	IGI	Process
GO:0006349	regulation of gene expression by genetic imprinting	21047779.	IDA	Process
GO:0006349	regulation of gene expression by genetic imprinting	11934864.15215868.	IMP	Process
GO:0007283	spermatogenesis	11934864.	IMP	Process
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008168	methyltransferase activity	11934864.	TAS	Function
GO:0009008	DNA-methyltransferase activity	-	IEA	Function
GO:0010216	maintenance of DNA methylation	21047779.	TAS	Process
GO:0010468	regulation of gene expression	-	IEA	Process
GO:0010942	positive regulation of cell death	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0032776	DNA methylation on cytosine	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043045	DNA methylation involved in embryo development	10555141.	IGI	Process
GO:0043045	DNA methylation involved in embryo development	15215868.20385583.	IMP	Process
GO:0043046	DNA methylation involved in gamete generation	15215868.	IMP	Process
GO:0044027	hypermethylation of CpG island	21047779.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071230	cellular response to amino acid stimulus	20548288.	IDA	Process