EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020705 (Gene tree)
Gene ID: 72047
Gene Symbol: Ddx42
Alias: 1810047H21Rik|B430002H05Rik|SF3b125
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 32214 bases
Position: chr11:106216926-106249139
Accession: 1919297
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000021046	ResIII	PF04851.15	1.6e-06	1	1
ENSMUSP00000021046	DEAD	PF00270.29	3.9e-49	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000021046	-	4011	XM_017314779	ENSMUSP00000021046	929 (aa)	XP_017170269	Q810A7
ENSMUST00000152860	-	445	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020705's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020705's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020705	Ddx42	50	36.270	ENSMUSG00000070291	Ddx43	74	36.270
ENSMUSG00000020705	Ddx42	51	32.075	ENSMUSG00000026404	Ddx59	74	32.075
ENSMUSG00000020705	Ddx42	59	38.172	ENSMUSG00000020719	Ddx5	88	43.137

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020705	Ddx42	100	95.314	ENSG00000198231	DDX42	100	98.077	Homo_sapiens
ENSMUSG00000020705	Ddx42	91	76.561	ENSAPOG00000017675	ddx42	97	73.855	Acanthochromis_polyacanthus
ENSMUSG00000020705	Ddx42	100	95.085	ENSAMEG00000003200	DDX42	100	95.085	Ailuropoda_melanoleuca
ENSMUSG00000020705	Ddx42	74	76.824	ENSACIG00000007376	ddx42	99	72.257	Amphilophus_citrinellus
ENSMUSG00000020705	Ddx42	91	76.706	ENSAOCG00000003520	ddx42	99	72.076	Amphiprion_ocellaris
ENSMUSG00000020705	Ddx42	91	76.887	ENSAPEG00000000984	ddx42	99	72.029	Amphiprion_percula
ENSMUSG00000020705	Ddx42	99	72.081	ENSATEG00000022920	ddx42	99	72.264	Anabas_testudineus
ENSMUSG00000020705	Ddx42	100	83.421	ENSAPLG00000010544	DDX42	100	84.534	Anas_platyrhynchos
ENSMUSG00000020705	Ddx42	100	84.043	ENSACAG00000003994	DDX42	99	84.574	Anolis_carolinensis
ENSMUSG00000020705	Ddx42	100	96.237	ENSANAG00000035693	DDX42	99	97.443	Aotus_nancymaae
ENSMUSG00000020705	Ddx42	89	76.941	ENSACLG00000025113	ddx42	99	72.641	Astatotilapia_calliptera
ENSMUSG00000020705	Ddx42	81	79.815	ENSAMXG00000011435	ddx42	99	69.835	Astyanax_mexicanus
ENSMUSG00000020705	Ddx42	100	94.338	ENSBTAG00000021058	DDX42	100	94.444	Bos_taurus
ENSMUSG00000020705	Ddx42	64	52.830	WBGene00008119	C46F11.4	78	53.052	Caenorhabditis_elegans
ENSMUSG00000020705	Ddx42	100	96.129	ENSCJAG00000019649	DDX42	99	98.172	Callithrix_jacchus
ENSMUSG00000020705	Ddx42	100	95.080	ENSCAFG00000012818	DDX42	100	95.080	Canis_familiaris
ENSMUSG00000020705	Ddx42	100	95.187	ENSCAFG00020026631	DDX42	100	95.187	Canis_lupus_dingo
ENSMUSG00000020705	Ddx42	100	94.462	ENSCHIG00000014431	DDX42	100	94.462	Capra_hircus
ENSMUSG00000020705	Ddx42	100	94.124	ENSTSYG00000001380	DDX42	100	94.124	Carlito_syrichta
ENSMUSG00000020705	Ddx42	73	75.628	ENSCAPG00000013621	DDX42	94	75.628	Cavia_aperea
ENSMUSG00000020705	Ddx42	100	95.704	ENSCPOG00000005633	DDX42	100	95.704	Cavia_porcellus
ENSMUSG00000020705	Ddx42	100	90.753	ENSCCAG00000020612	DDX42	100	95.068	Cebus_capucinus
ENSMUSG00000020705	Ddx42	100	95.914	ENSCATG00000030490	DDX42	100	95.806	Cercocebus_atys
ENSMUSG00000020705	Ddx42	100	96.348	ENSCLAG00000003497	DDX42	100	95.918	Chinchilla_lanigera
ENSMUSG00000020705	Ddx42	100	91.314	ENSCSAG00000003914	DDX42	100	91.314	Chlorocebus_sabaeus
ENSMUSG00000020705	Ddx42	79	94.643	ENSCHOG00000006241	DDX42	79	94.643	Choloepus_hoffmanni
ENSMUSG00000020705	Ddx42	100	83.716	ENSCPBG00000026682	DDX42	100	83.593	Chrysemys_picta_bellii
ENSMUSG00000020705	Ddx42	100	95.914	ENSCANG00000034663	DDX42	99	97.410	Colobus_angolensis_palliatus
ENSMUSG00000020705	Ddx42	100	97.417	ENSCGRG00001009775	Ddx42	100	97.417	Cricetulus_griseus_chok1gshd
ENSMUSG00000020705	Ddx42	100	97.417	ENSCGRG00000011718	Ddx42	100	97.417	Cricetulus_griseus_crigri
ENSMUSG00000020705	Ddx42	91	74.616	ENSCSEG00000021574	ddx42	99	70.224	Cynoglossus_semilaevis
ENSMUSG00000020705	Ddx42	99	70.224	ENSCVAG00000011404	ddx42	99	71.612	Cyprinodon_variegatus
ENSMUSG00000020705	Ddx42	99	69.286	ENSDARG00000037928	ddx42	99	70.637	Danio_rerio
ENSMUSG00000020705	Ddx42	100	89.019	ENSDNOG00000007961	DDX42	100	89.019	Dasypus_novemcinctus
ENSMUSG00000020705	Ddx42	100	87.687	ENSDORG00000004199	Ddx42	100	87.152	Dipodomys_ordii
ENSMUSG00000020705	Ddx42	66	60.353	FBgn0036104	CG6418	88	55.398	Drosophila_melanogaster
ENSMUSG00000020705	Ddx42	80	73.475	ENSEBUG00000001155	ddx42	91	73.475	Eptatretus_burgeri
ENSMUSG00000020705	Ddx42	100	96.150	ENSEASG00005013089	DDX42	99	97.429	Equus_asinus_asinus
ENSMUSG00000020705	Ddx42	100	96.257	ENSECAG00000022684	DDX42	100	96.257	Equus_caballus
ENSMUSG00000020705	Ddx42	67	97.297	ENSEEUG00000009144	DDX42	85	97.297	Erinaceus_europaeus
ENSMUSG00000020705	Ddx42	100	70.052	ENSELUG00000020593	ddx42	99	70.899	Esox_lucius
ENSMUSG00000020705	Ddx42	100	96.150	ENSFCAG00000003499	DDX42	100	96.150	Felis_catus
ENSMUSG00000020705	Ddx42	96	84.581	ENSFALG00000004675	DDX42	78	84.305	Ficedula_albicollis
ENSMUSG00000020705	Ddx42	100	95.923	ENSFDAG00000020516	DDX42	100	95.923	Fukomys_damarensis
ENSMUSG00000020705	Ddx42	99	69.616	ENSFHEG00000023290	ddx42	99	71.109	Fundulus_heteroclitus
ENSMUSG00000020705	Ddx42	76	78.138	ENSGMOG00000004595	ddx42	79	78.138	Gadus_morhua
ENSMUSG00000020705	Ddx42	100	82.555	ENSGALG00000000581	DDX42	100	82.866	Gallus_gallus
ENSMUSG00000020705	Ddx42	91	74.941	ENSGAFG00000011846	ddx42	96	72.979	Gambusia_affinis
ENSMUSG00000020705	Ddx42	99	68.844	ENSGACG00000009782	ddx42	99	67.550	Gasterosteus_aculeatus
ENSMUSG00000020705	Ddx42	100	83.996	ENSGAGG00000024411	DDX42	99	83.247	Gopherus_agassizii
ENSMUSG00000020705	Ddx42	100	95.914	ENSGGOG00000006779	DDX42	100	95.806	Gorilla_gorilla
ENSMUSG00000020705	Ddx42	89	77.180	ENSHBUG00000008705	ddx42	99	72.853	Haplochromis_burtoni
ENSMUSG00000020705	Ddx42	100	91.613	ENSHGLG00000010024	DDX42	100	91.398	Heterocephalus_glaber_female
ENSMUSG00000020705	Ddx42	100	95.294	ENSHGLG00100004479	-	100	95.294	Heterocephalus_glaber_male
ENSMUSG00000020705	Ddx42	94	73.020	ENSHGLG00100007138	-	95	72.675	Heterocephalus_glaber_male
ENSMUSG00000020705	Ddx42	84	77.863	ENSHCOG00000003357	ddx42	92	77.863	Hippocampus_comes
ENSMUSG00000020705	Ddx42	80	79.789	ENSIPUG00000013327	ddx42	100	69.777	Ictalurus_punctatus
ENSMUSG00000020705	Ddx42	100	96.888	ENSSTOG00000008922	DDX42	100	96.888	Ictidomys_tridecemlineatus
ENSMUSG00000020705	Ddx42	100	95.596	ENSJJAG00000011727	Ddx42	100	95.596	Jaculus_jaculus
ENSMUSG00000020705	Ddx42	90	75.981	ENSKMAG00000009914	ddx42	99	71.852	Kryptolebias_marmoratus
ENSMUSG00000020705	Ddx42	81	76.333	ENSLBEG00000004687	ddx42	99	66.914	Labrus_bergylta
ENSMUSG00000020705	Ddx42	99	76.319	ENSLACG00000013476	DDX42	97	77.610	Latimeria_chalumnae
ENSMUSG00000020705	Ddx42	100	74.866	ENSLOCG00000011764	ddx42	99	75.269	Lepisosteus_oculatus
ENSMUSG00000020705	Ddx42	100	95.591	ENSLAFG00000003249	DDX42	100	95.401	Loxodonta_africana
ENSMUSG00000020705	Ddx42	100	95.914	ENSMFAG00000031356	DDX42	100	95.806	Macaca_fascicularis
ENSMUSG00000020705	Ddx42	100	95.717	ENSMMUG00000016762	DDX42	100	95.610	Macaca_mulatta
ENSMUSG00000020705	Ddx42	100	95.914	ENSMNEG00000038250	DDX42	100	95.806	Macaca_nemestrina
ENSMUSG00000020705	Ddx42	100	95.101	ENSMLEG00000043080	DDX42	100	95.101	Mandrillus_leucophaeus
ENSMUSG00000020705	Ddx42	91	77.241	ENSMAMG00000021888	ddx42	98	71.921	Mastacembelus_armatus
ENSMUSG00000020705	Ddx42	89	76.941	ENSMZEG00005023103	ddx42	99	72.641	Maylandia_zebra
ENSMUSG00000020705	Ddx42	100	83.074	ENSMGAG00000001822	DDX42	100	83.402	Meleagris_gallopavo
ENSMUSG00000020705	Ddx42	76	98.295	ENSMAUG00000020774	-	94	98.295	Mesocricetus_auratus
ENSMUSG00000020705	Ddx42	100	96.237	ENSMICG00000009952	DDX42	100	96.237	Microcebus_murinus
ENSMUSG00000020705	Ddx42	100	96.555	ENSMOCG00000015504	Ddx42	100	96.555	Microtus_ochrogaster
ENSMUSG00000020705	Ddx42	89	72.695	ENSMMOG00000016963	ddx42	87	70.159	Mola_mola
ENSMUSG00000020705	Ddx42	50	97.645	ENSMODG00000009917	-	98	97.645	Monodelphis_domestica
ENSMUSG00000020705	Ddx42	99	71.979	ENSMALG00000007800	ddx42	99	72.805	Monopterus_albus
ENSMUSG00000020705	Ddx42	100	99.677	MGP_CAROLIEiJ_G0017314	Ddx42	100	99.677	Mus_caroli
ENSMUSG00000020705	Ddx42	79	99.851	MGP_PahariEiJ_G0018444	-	100	99.851	Mus_pahari
ENSMUSG00000020705	Ddx42	100	99.462	MGP_SPRETEiJ_G0018158	Ddx42	100	99.462	Mus_spretus
ENSMUSG00000020705	Ddx42	100	95.324	ENSMPUG00000014921	DDX42	100	95.324	Mustela_putorius_furo
ENSMUSG00000020705	Ddx42	100	92.835	ENSMLUG00000011645	DDX42	100	93.256	Myotis_lucifugus
ENSMUSG00000020705	Ddx42	100	97.100	ENSNGAG00000021897	Ddx42	100	97.100	Nannospalax_galili
ENSMUSG00000020705	Ddx42	89	75.627	ENSNBRG00000004466	ddx42	99	71.474	Neolamprologus_brichardi
ENSMUSG00000020705	Ddx42	100	95.806	ENSNLEG00000004248	DDX42	99	97.557	Nomascus_leucogenys
ENSMUSG00000020705	Ddx42	74	82.444	ENSMEUG00000013227	-	85	82.444	Notamacropus_eugenii
ENSMUSG00000020705	Ddx42	100	94.350	ENSOPRG00000014960	DDX42	100	94.456	Ochotona_princeps
ENSMUSG00000020705	Ddx42	100	92.696	ENSODEG00000007810	DDX42	100	92.266	Octodon_degus
ENSMUSG00000020705	Ddx42	89	77.061	ENSONIG00000000734	ddx42	99	72.641	Oreochromis_niloticus
ENSMUSG00000020705	Ddx42	58	92.208	ENSOANG00000000265	DDX42	100	92.208	Ornithorhynchus_anatinus
ENSMUSG00000020705	Ddx42	95	95.388	ENSOCUG00000004304	DDX42	88	95.276	Oryctolagus_cuniculus
ENSMUSG00000020705	Ddx42	100	70.626	ENSORLG00000002395	ddx42	100	69.468	Oryzias_latipes
ENSMUSG00000020705	Ddx42	100	70.957	ENSORLG00020011621	ddx42	100	71.975	Oryzias_latipes_hni
ENSMUSG00000020705	Ddx42	100	70.701	ENSORLG00015004487	ddx42	100	71.762	Oryzias_latipes_hsok
ENSMUSG00000020705	Ddx42	80	82.290	ENSOMEG00000020093	ddx42	100	71.005	Oryzias_melastigma
ENSMUSG00000020705	Ddx42	100	95.096	ENSOGAG00000006872	DDX42	100	95.096	Otolemur_garnettii
ENSMUSG00000020705	Ddx42	100	93.565	ENSOARG00000013540	DDX42	100	93.776	Ovis_aries
ENSMUSG00000020705	Ddx42	100	96.129	ENSPPAG00000007496	DDX42	100	96.022	Pan_paniscus
ENSMUSG00000020705	Ddx42	100	96.043	ENSPPRG00000002740	DDX42	100	96.043	Panthera_pardus
ENSMUSG00000020705	Ddx42	100	95.722	ENSPTIG00000009932	DDX42	100	95.722	Panthera_tigris_altaica
ENSMUSG00000020705	Ddx42	100	96.129	ENSPTRG00000009523	DDX42	100	96.022	Pan_troglodytes
ENSMUSG00000020705	Ddx42	100	95.806	ENSPANG00000020990	DDX42	100	95.699	Papio_anubis
ENSMUSG00000020705	Ddx42	100	70.771	ENSPKIG00000002901	ddx42	99	70.708	Paramormyrops_kingsleyae
ENSMUSG00000020705	Ddx42	86	91.553	ENSPSIG00000010289	DDX42	98	91.256	Pelodiscus_sinensis
ENSMUSG00000020705	Ddx42	100	67.375	ENSPMGG00000009323	ddx42	100	68.332	Periophthalmus_magnuspinnatus
ENSMUSG00000020705	Ddx42	100	97.527	ENSPEMG00000006755	Ddx42	100	97.527	Peromyscus_maniculatus_bairdii
ENSMUSG00000020705	Ddx42	80	72.215	ENSPMAG00000005580	ddx42	100	72.870	Petromyzon_marinus
ENSMUSG00000020705	Ddx42	100	90.572	ENSPCIG00000009093	DDX42	100	90.360	Phascolarctos_cinereus
ENSMUSG00000020705	Ddx42	99	69.917	ENSPFOG00000014104	ddx42	99	71.459	Poecilia_formosa
ENSMUSG00000020705	Ddx42	99	69.917	ENSPLAG00000010522	ddx42	99	71.414	Poecilia_latipinna
ENSMUSG00000020705	Ddx42	100	70.062	ENSPMEG00000010744	ddx42	99	71.668	Poecilia_mexicana
ENSMUSG00000020705	Ddx42	100	69.485	ENSPREG00000009926	ddx42	99	70.509	Poecilia_reticulata
ENSMUSG00000020705	Ddx42	100	93.001	ENSPPYG00000008531	DDX42	100	93.001	Pongo_abelii
ENSMUSG00000020705	Ddx42	92	89.431	ENSPCAG00000002474	DDX42	100	89.431	Procavia_capensis
ENSMUSG00000020705	Ddx42	100	85.882	ENSPCOG00000001559	DDX42	98	89.102	Propithecus_coquereli
ENSMUSG00000020705	Ddx42	100	91.560	ENSPVAG00000000160	DDX42	100	91.560	Pteropus_vampyrus
ENSMUSG00000020705	Ddx42	74	74.928	ENSPNYG00000013954	ddx42	97	70.125	Pundamilia_nyererei
ENSMUSG00000020705	Ddx42	78	81.063	ENSPNAG00000017352	ddx42	99	69.825	Pygocentrus_nattereri
ENSMUSG00000020705	Ddx42	100	98.708	ENSRNOG00000009474	Ddx42	100	98.708	Rattus_norvegicus
ENSMUSG00000020705	Ddx42	100	95.806	ENSRBIG00000004781	DDX42	99	97.410	Rhinopithecus_bieti
ENSMUSG00000020705	Ddx42	100	95.914	ENSRROG00000029794	DDX42	100	95.806	Rhinopithecus_roxellana
ENSMUSG00000020705	Ddx42	100	96.237	ENSSBOG00000029624	DDX42	100	96.237	Saimiri_boliviensis_boliviensis
ENSMUSG00000020705	Ddx42	100	90.890	ENSSHAG00000012896	-	100	90.678	Sarcophilus_harrisii
ENSMUSG00000020705	Ddx42	71	59.970	ENSSHAG00000007919	-	99	59.111	Sarcophilus_harrisii
ENSMUSG00000020705	Ddx42	82	80.438	ENSSFOG00015014064	ddx42	83	80.566	Scleropages_formosus
ENSMUSG00000020705	Ddx42	99	71.230	ENSSMAG00000009077	ddx42	99	72.316	Scophthalmus_maximus
ENSMUSG00000020705	Ddx42	99	72.021	ENSSDUG00000022221	ddx42	99	72.293	Seriola_dumerili
ENSMUSG00000020705	Ddx42	99	71.674	ENSSLDG00000018483	ddx42	99	71.627	Seriola_lalandi_dorsalis
ENSMUSG00000020705	Ddx42	100	94.439	ENSSARG00000009847	DDX42	100	94.439	Sorex_araneus
ENSMUSG00000020705	Ddx42	100	83.817	ENSSPUG00000018806	DDX42	100	83.368	Sphenodon_punctatus
ENSMUSG00000020705	Ddx42	91	76.678	ENSSPAG00000013055	ddx42	99	72.187	Stegastes_partitus
ENSMUSG00000020705	Ddx42	85	93.176	ENSSSCG00000017289	DDX42	97	93.548	Sus_scrofa
ENSMUSG00000020705	Ddx42	100	83.316	ENSTGUG00000001931	DDX42	100	83.316	Taeniopygia_guttata
ENSMUSG00000020705	Ddx42	99	70.204	ENSTRUG00000010711	ddx42	99	79.431	Takifugu_rubripes
ENSMUSG00000020705	Ddx42	82	93.158	ENSTBEG00000010159	DDX42	99	93.158	Tupaia_belangeri
ENSMUSG00000020705	Ddx42	100	95.085	ENSTTRG00000006962	DDX42	100	94.658	Tursiops_truncatus
ENSMUSG00000020705	Ddx42	100	95.192	ENSUAMG00000007321	DDX42	100	95.192	Ursus_americanus
ENSMUSG00000020705	Ddx42	100	94.338	ENSUMAG00000017438	DDX42	100	94.338	Ursus_maritimus
ENSMUSG00000020705	Ddx42	100	86.096	ENSVPAG00000009633	DDX42	100	86.096	Vicugna_pacos
ENSMUSG00000020705	Ddx42	100	95.401	ENSVVUG00000006095	DDX42	100	95.401	Vulpes_vulpes
ENSMUSG00000020705	Ddx42	100	77.101	ENSXETG00000003245	ddx42	100	75.129	Xenopus_tropicalis
ENSMUSG00000020705	Ddx42	84	71.283	ENSXCOG00000017560	ddx42	97	71.483	Xiphophorus_couchianus
ENSMUSG00000020705	Ddx42	100	71.811	ENSXMAG00000008138	ddx42	99	72.270	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008104	protein localization	-	ISO	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042981	regulation of apoptotic process	-	ISO	Process