EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020706 (Gene tree)
Gene ID: 56095
Gene Symbol: Ftsj3
Alias: C79843|D11Ertd400e|Epcs3
Full Name: FtsJ RNA methyltransferase homolog 3 (E. coli)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 6938 bases
Position: chr11:106249142-106256079
Accession: 1860295
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000021048	FtsJ	PF01728.19	1.7e-55	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127803	-	543	-	-	- (aa)	-	-
ENSMUST00000143884	-	700	-	-	- (aa)	-	-
ENSMUST00000126938	-	574	-	-	- (aa)	-	-
ENSMUST00000143729	-	677	-	-	- (aa)	-	-
ENSMUST00000021048	-	3144	-	ENSMUSP00000021048	838 (aa)	-	Q9DBE9
ENSMUST00000154635	-	590	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020706's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020706	Ftsj3	98	87.170	ENSG00000108592	FTSJ3	100	100.000	Homo_sapiens
ENSMUSG00000020706	Ftsj3	72	68.750	ENSAPOG00000005543	ftsj3	86	68.941	Acanthochromis_polyacanthus
ENSMUSG00000020706	Ftsj3	100	87.530	ENSAMEG00000003148	FTSJ3	98	88.179	Ailuropoda_melanoleuca
ENSMUSG00000020706	Ftsj3	100	60.256	ENSAOCG00000023196	ftsj3	96	62.262	Amphiprion_ocellaris
ENSMUSG00000020706	Ftsj3	100	60.140	ENSAPEG00000004250	ftsj3	97	62.188	Amphiprion_percula
ENSMUSG00000020706	Ftsj3	92	60.205	ENSATEG00000010069	ftsj3	96	60.751	Anabas_testudineus
ENSMUSG00000020706	Ftsj3	92	61.111	ENSAPLG00000010362	-	98	61.499	Anas_platyrhynchos
ENSMUSG00000020706	Ftsj3	88	63.469	ENSACAG00000017930	FTSJ3	98	64.603	Anolis_carolinensis
ENSMUSG00000020706	Ftsj3	98	87.424	ENSANAG00000033774	FTSJ3	98	88.029	Aotus_nancymaae
ENSMUSG00000020706	Ftsj3	84	70.787	ENSACLG00000019137	ftsj3	97	70.787	Astatotilapia_calliptera
ENSMUSG00000020706	Ftsj3	99	60.757	ENSAMXG00000021571	ftsj3	94	62.262	Astyanax_mexicanus
ENSMUSG00000020706	Ftsj3	98	88.862	ENSBTAG00000021060	FTSJ3	98	88.983	Bos_taurus
ENSMUSG00000020706	Ftsj3	99	41.029	WBGene00019168	H06I04.3	100	41.069	Caenorhabditis_elegans
ENSMUSG00000020706	Ftsj3	98	86.578	ENSCJAG00000019631	FTSJ3	98	87.062	Callithrix_jacchus
ENSMUSG00000020706	Ftsj3	100	86.801	ENSCAFG00000012770	FTSJ3	98	86.699	Canis_familiaris
ENSMUSG00000020706	Ftsj3	100	87.738	ENSCAFG00020026630	FTSJ3	98	87.651	Canis_lupus_dingo
ENSMUSG00000020706	Ftsj3	98	89.104	ENSCHIG00000025676	FTSJ3	98	88.620	Capra_hircus
ENSMUSG00000020706	Ftsj3	95	81.852	ENSTSYG00000001393	FTSJ3	97	81.576	Carlito_syrichta
ENSMUSG00000020706	Ftsj3	71	80.645	ENSCAPG00000016654	FTSJ3	98	80.242	Cavia_aperea
ENSMUSG00000020706	Ftsj3	98	86.627	ENSCPOG00000011384	FTSJ3	98	86.506	Cavia_porcellus
ENSMUSG00000020706	Ftsj3	98	87.183	ENSCCAG00000023533	-	97	91.493	Cebus_capucinus
ENSMUSG00000020706	Ftsj3	98	86.691	ENSCATG00000018510	FTSJ3	98	86.811	Cercocebus_atys
ENSMUSG00000020706	Ftsj3	98	88.150	ENSCLAG00000003222	FTSJ3	98	88.029	Chinchilla_lanigera
ENSMUSG00000020706	Ftsj3	100	86.967	ENSCSAG00000003921	FTSJ3	98	86.883	Chlorocebus_sabaeus
ENSMUSG00000020706	Ftsj3	99	69.104	ENSCPBG00000010032	FTSJ3	90	83.770	Chrysemys_picta_bellii
ENSMUSG00000020706	Ftsj3	58	57.980	ENSCSAVG00000003607	-	97	41.268	Ciona_savignyi
ENSMUSG00000020706	Ftsj3	98	87.124	ENSCANG00000042921	FTSJ3	98	87.124	Colobus_angolensis_palliatus
ENSMUSG00000020706	Ftsj3	98	91.404	ENSCGRG00001018068	FTSJ3	98	91.646	Cricetulus_griseus_chok1gshd
ENSMUSG00000020706	Ftsj3	98	91.404	ENSCGRG00000010648	FTSJ3	98	91.646	Cricetulus_griseus_crigri
ENSMUSG00000020706	Ftsj3	99	60.511	ENSCSEG00000013468	ftsj3	96	61.302	Cynoglossus_semilaevis
ENSMUSG00000020706	Ftsj3	99	62.976	ENSCVAG00000007484	ftsj3	97	63.341	Cyprinodon_variegatus
ENSMUSG00000020706	Ftsj3	99	61.730	ENSDARG00000104938	ftsj3	97	62.110	Danio_rerio
ENSMUSG00000020706	Ftsj3	100	83.294	ENSDNOG00000002392	FTSJ3	98	83.933	Dasypus_novemcinctus
ENSMUSG00000020706	Ftsj3	98	90.338	ENSDORG00000004200	Ftsj3	98	90.459	Dipodomys_ordii
ENSMUSG00000020706	Ftsj3	99	40.581	FBgn0030720	CG8939	98	39.815	Drosophila_melanogaster
ENSMUSG00000020706	Ftsj3	100	83.235	ENSETEG00000019228	FTSJ3	98	83.693	Echinops_telfairi
ENSMUSG00000020706	Ftsj3	99	52.205	ENSEBUG00000007828	ftsj3	97	51.865	Eptatretus_burgeri
ENSMUSG00000020706	Ftsj3	100	88.124	ENSEASG00005013565	FTSJ3	98	88.299	Equus_asinus_asinus
ENSMUSG00000020706	Ftsj3	98	88.540	ENSECAG00000011995	FTSJ3	98	87.923	Equus_caballus
ENSMUSG00000020706	Ftsj3	99	60.353	ENSELUG00000013501	ftsj3	95	60.261	Esox_lucius
ENSMUSG00000020706	Ftsj3	100	86.770	ENSFCAG00000013983	FTSJ3	98	87.046	Felis_catus
ENSMUSG00000020706	Ftsj3	98	69.286	ENSFALG00000013635	FTSJ3	99	70.238	Ficedula_albicollis
ENSMUSG00000020706	Ftsj3	98	87.030	ENSFDAG00000010274	FTSJ3	98	87.273	Fukomys_damarensis
ENSMUSG00000020706	Ftsj3	99	62.766	ENSFHEG00000007639	ftsj3	97	63.473	Fundulus_heteroclitus
ENSMUSG00000020706	Ftsj3	51	71.396	ENSGMOG00000017184	ftsj3	100	71.167	Gadus_morhua
ENSMUSG00000020706	Ftsj3	98	70.299	ENSGALG00000032993	FTSJ3	99	70.933	Gallus_gallus
ENSMUSG00000020706	Ftsj3	51	72.365	ENSGACG00000009841	ftsj3	100	71.897	Gasterosteus_aculeatus
ENSMUSG00000020706	Ftsj3	99	71.479	ENSGAGG00000006236	FTSJ3	99	72.269	Gopherus_agassizii
ENSMUSG00000020706	Ftsj3	98	87.711	ENSGGOG00000006794	FTSJ3	98	87.831	Gorilla_gorilla
ENSMUSG00000020706	Ftsj3	99	62.663	ENSHBUG00000022331	ftsj3	96	63.278	Haplochromis_burtoni
ENSMUSG00000020706	Ftsj3	98	88.242	ENSHGLG00000012282	FTSJ3	98	87.879	Heterocephalus_glaber_female
ENSMUSG00000020706	Ftsj3	99	88.271	ENSHGLG00100003578	FTSJ3	98	87.879	Heterocephalus_glaber_male
ENSMUSG00000020706	Ftsj3	99	61.775	ENSHCOG00000018770	ftsj3	96	62.156	Hippocampus_comes
ENSMUSG00000020706	Ftsj3	99	61.137	ENSIPUG00000024942	ftsj3	94	62.172	Ictalurus_punctatus
ENSMUSG00000020706	Ftsj3	98	87.937	ENSSTOG00000021265	FTSJ3	98	88.378	Ictidomys_tridecemlineatus
ENSMUSG00000020706	Ftsj3	98	88.136	ENSJJAG00000012822	Ftsj3	98	88.257	Jaculus_jaculus
ENSMUSG00000020706	Ftsj3	99	62.559	ENSKMAG00000021997	ftsj3	96	63.070	Kryptolebias_marmoratus
ENSMUSG00000020706	Ftsj3	99	61.593	ENSLBEG00000027142	ftsj3	96	60.952	Labrus_bergylta
ENSMUSG00000020706	Ftsj3	82	48.880	ENSLACG00000005523	FTSJ3	99	50.000	Latimeria_chalumnae
ENSMUSG00000020706	Ftsj3	99	62.633	ENSLOCG00000008979	ftsj3	98	63.473	Lepisosteus_oculatus
ENSMUSG00000020706	Ftsj3	100	86.207	ENSLAFG00000003252	FTSJ3	98	86.111	Loxodonta_africana
ENSMUSG00000020706	Ftsj3	98	86.779	ENSMFAG00000003764	FTSJ3	98	86.899	Macaca_fascicularis
ENSMUSG00000020706	Ftsj3	98	82.892	ENSMMUG00000016768	FTSJ3	98	82.036	Macaca_mulatta
ENSMUSG00000020706	Ftsj3	98	86.555	ENSMNEG00000029254	FTSJ3	98	86.795	Macaca_nemestrina
ENSMUSG00000020706	Ftsj3	98	87.019	ENSMLEG00000029091	FTSJ3	98	87.260	Mandrillus_leucophaeus
ENSMUSG00000020706	Ftsj3	99	62.782	ENSMZEG00005001992	ftsj3	96	63.309	Maylandia_zebra
ENSMUSG00000020706	Ftsj3	67	73.592	ENSMGAG00000000953	FTSJ3	99	65.434	Meleagris_gallopavo
ENSMUSG00000020706	Ftsj3	98	90.931	ENSMAUG00000015688	Ftsj3	98	91.052	Mesocricetus_auratus
ENSMUSG00000020706	Ftsj3	98	89.480	ENSMICG00000045996	FTSJ3	98	89.722	Microcebus_murinus
ENSMUSG00000020706	Ftsj3	100	91.885	ENSMOCG00000017809	Ftsj3	98	91.636	Microtus_ochrogaster
ENSMUSG00000020706	Ftsj3	66	62.963	ENSMMOG00000019522	ftsj3	89	59.905	Mola_mola
ENSMUSG00000020706	Ftsj3	99	79.048	ENSMODG00000009901	FTSJ3	98	78.382	Monodelphis_domestica
ENSMUSG00000020706	Ftsj3	100	98.449	MGP_CAROLIEiJ_G0017315	Ftsj3	100	98.449	Mus_caroli
ENSMUSG00000020706	Ftsj3	100	97.855	MGP_PahariEiJ_G0018445	Ftsj3	100	97.855	Mus_pahari
ENSMUSG00000020706	Ftsj3	100	99.165	MGP_SPRETEiJ_G0018159	Ftsj3	100	99.165	Mus_spretus
ENSMUSG00000020706	Ftsj3	100	87.411	ENSMPUG00000014911	FTSJ3	98	86.578	Mustela_putorius_furo
ENSMUSG00000020706	Ftsj3	100	88.347	ENSMLUG00000011667	FTSJ3	98	88.527	Myotis_lucifugus
ENSMUSG00000020706	Ftsj3	99	90.602	ENSNGAG00000005899	Ftsj3	98	90.689	Nannospalax_galili
ENSMUSG00000020706	Ftsj3	85	71.123	ENSNBRG00000017453	ftsj3	97	71.348	Neolamprologus_brichardi
ENSMUSG00000020706	Ftsj3	99	87.696	ENSNLEG00000004188	FTSJ3	98	87.666	Nomascus_leucogenys
ENSMUSG00000020706	Ftsj3	100	71.897	ENSMEUG00000013252	FTSJ3	98	73.671	Notamacropus_eugenii
ENSMUSG00000020706	Ftsj3	98	85.988	ENSOPRG00000014985	FTSJ3	98	85.509	Ochotona_princeps
ENSMUSG00000020706	Ftsj3	100	87.857	ENSODEG00000008167	FTSJ3	98	87.651	Octodon_degus
ENSMUSG00000020706	Ftsj3	99	62.901	ENSONIG00000001654	ftsj3	96	63.114	Oreochromis_niloticus
ENSMUSG00000020706	Ftsj3	100	85.629	ENSOCUG00000004319	FTSJ3	98	84.885	Oryctolagus_cuniculus
ENSMUSG00000020706	Ftsj3	99	61.313	ENSORLG00000005910	ftsj3	96	62.275	Oryzias_latipes
ENSMUSG00000020706	Ftsj3	99	61.854	ENSORLG00020021255	ftsj3	89	72.159	Oryzias_latipes_hni
ENSMUSG00000020706	Ftsj3	99	59.469	ENSORLG00015018416	ftsj3	96	61.548	Oryzias_latipes_hsok
ENSMUSG00000020706	Ftsj3	99	61.910	ENSOMEG00000014432	ftsj3	88	71.429	Oryzias_melastigma
ENSMUSG00000020706	Ftsj3	100	88.242	ENSOGAG00000032479	FTSJ3	98	87.817	Otolemur_garnettii
ENSMUSG00000020706	Ftsj3	98	88.875	ENSOARG00000013637	FTSJ3	98	88.875	Ovis_aries
ENSMUSG00000020706	Ftsj3	98	87.515	ENSPPAG00000027297	FTSJ3	98	87.755	Pan_paniscus
ENSMUSG00000020706	Ftsj3	100	86.293	ENSPPRG00000003042	FTSJ3	98	87.046	Panthera_pardus
ENSMUSG00000020706	Ftsj3	100	85.664	ENSPTIG00000012576	FTSJ3	98	86.522	Panthera_tigris_altaica
ENSMUSG00000020706	Ftsj3	98	87.410	ENSPTRG00000009524	FTSJ3	98	87.650	Pan_troglodytes
ENSMUSG00000020706	Ftsj3	98	86.899	ENSPANG00000020978	FTSJ3	98	87.019	Papio_anubis
ENSMUSG00000020706	Ftsj3	77	71.429	ENSPKIG00000012838	ftsj3	96	62.710	Paramormyrops_kingsleyae
ENSMUSG00000020706	Ftsj3	59	83.333	ENSPSIG00000004632	FTSJ3	68	88.043	Pelodiscus_sinensis
ENSMUSG00000020706	Ftsj3	88	66.184	ENSPMGG00000012959	ftsj3	98	55.368	Periophthalmus_magnuspinnatus
ENSMUSG00000020706	Ftsj3	98	93.333	ENSPEMG00000000248	Ftsj3	98	93.576	Peromyscus_maniculatus_bairdii
ENSMUSG00000020706	Ftsj3	100	77.765	ENSPCIG00000009088	FTSJ3	98	79.011	Phascolarctos_cinereus
ENSMUSG00000020706	Ftsj3	99	61.033	ENSPFOG00000023101	ftsj3	97	61.091	Poecilia_formosa
ENSMUSG00000020706	Ftsj3	100	60.864	ENSPLAG00000003846	ftsj3	97	60.973	Poecilia_latipinna
ENSMUSG00000020706	Ftsj3	99	61.150	ENSPMEG00000012692	ftsj3	97	61.210	Poecilia_mexicana
ENSMUSG00000020706	Ftsj3	99	60.890	ENSPREG00000014874	ftsj3	97	61.747	Poecilia_reticulata
ENSMUSG00000020706	Ftsj3	98	86.336	ENSPPYG00000008532	FTSJ3	98	86.215	Pongo_abelii
ENSMUSG00000020706	Ftsj3	99	84.110	ENSPCAG00000002560	FTSJ3	98	83.273	Procavia_capensis
ENSMUSG00000020706	Ftsj3	98	88.285	ENSPCOG00000023921	FTSJ3	98	88.527	Propithecus_coquereli
ENSMUSG00000020706	Ftsj3	100	88.256	ENSPVAG00000000162	FTSJ3	98	88.313	Pteropus_vampyrus
ENSMUSG00000020706	Ftsj3	85	70.681	ENSPNYG00000005108	ftsj3	96	71.348	Pundamilia_nyererei
ENSMUSG00000020706	Ftsj3	97	59.639	ENSPNAG00000022474	ftsj3	94	60.784	Pygocentrus_nattereri
ENSMUSG00000020706	Ftsj3	100	94.875	ENSRNOG00000009857	Ftsj3	99	95.642	Rattus_norvegicus
ENSMUSG00000020706	Ftsj3	98	87.108	ENSRBIG00000039259	FTSJ3	98	86.988	Rhinopithecus_bieti
ENSMUSG00000020706	Ftsj3	98	87.093	ENSRROG00000045002	FTSJ3	98	86.972	Rhinopithecus_roxellana
ENSMUSG00000020706	Ftsj3	54	42.766	YCL054W	-	99	35.576	Saccharomyces_cerevisiae
ENSMUSG00000020706	Ftsj3	99	87.108	ENSSBOG00000031794	FTSJ3	92	87.787	Saimiri_boliviensis_boliviensis
ENSMUSG00000020706	Ftsj3	100	77.817	ENSSHAG00000013062	FTSJ3	98	78.460	Sarcophilus_harrisii
ENSMUSG00000020706	Ftsj3	66	65.714	ENSSFOG00015018053	ftsj3	97	62.336	Scleropages_formosus
ENSMUSG00000020706	Ftsj3	66	63.262	ENSSMAG00000002863	ftsj3	96	60.000	Scophthalmus_maximus
ENSMUSG00000020706	Ftsj3	99	61.385	ENSSDUG00000003385	ftsj3	95	62.246	Seriola_dumerili
ENSMUSG00000020706	Ftsj3	99	61.747	ENSSLDG00000017970	ftsj3	95	62.246	Seriola_lalandi_dorsalis
ENSMUSG00000020706	Ftsj3	92	69.755	ENSSPUG00000012959	FTSJ3	99	69.280	Sphenodon_punctatus
ENSMUSG00000020706	Ftsj3	99	59.977	ENSSPAG00000002390	ftsj3	96	62.102	Stegastes_partitus
ENSMUSG00000020706	Ftsj3	98	87.681	ENSSSCG00000017288	FTSJ3	98	88.043	Sus_scrofa
ENSMUSG00000020706	Ftsj3	99	60.664	ENSTRUG00000017550	ftsj3	88	70.455	Takifugu_rubripes
ENSMUSG00000020706	Ftsj3	99	61.019	ENSTNIG00000015549	ftsj3	98	61.345	Tetraodon_nigroviridis
ENSMUSG00000020706	Ftsj3	98	81.862	ENSTBEG00000010295	FTSJ3	98	81.983	Tupaia_belangeri
ENSMUSG00000020706	Ftsj3	98	87.319	ENSTTRG00000006973	FTSJ3	98	87.077	Tursiops_truncatus
ENSMUSG00000020706	Ftsj3	82	99.254	ENSUAMG00000007332	FTSJ3	94	99.254	Ursus_americanus
ENSMUSG00000020706	Ftsj3	100	87.277	ENSUMAG00000017450	FTSJ3	98	87.560	Ursus_maritimus
ENSMUSG00000020706	Ftsj3	100	87.619	ENSVVUG00000006106	FTSJ3	98	87.530	Vulpes_vulpes
ENSMUSG00000020706	Ftsj3	97	58.706	ENSXETG00000006939	ftsj3	99	58.513	Xenopus_tropicalis
ENSMUSG00000020706	Ftsj3	85	70.330	ENSXCOG00000002999	ftsj3	88	69.886	Xiphophorus_couchianus
ENSMUSG00000020706	Ftsj3	66	65.480	ENSXMAG00000018139	ftsj3	96	61.621	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001510	RNA methylation	-	IEA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008649	rRNA methyltransferase activity	-	IEA	Function
GO:0008650	rRNA (uridine-2'-O-)-methyltransferase activity	21873635.	IBA	Function
GO:0016435	rRNA (guanine) methyltransferase activity	21873635.	IBA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0031167	rRNA methylation	21873635.	IBA	Process
GO:0032259	methylation	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process