EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020721 (Gene tree)
Gene ID: 78455
Gene Symbol: Helz
Alias: 3110078M01Rik|9430093I07Rik|9630002H22Rik
Full Name: helicase with zinc finger domain
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 145897 bases
Position: chr11:107547930-107693826
Accession: 1925705
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000097878	zf-CCCH	PF00642.24	2.3e-07	1	1
ENSMUSP00000102357	zf-CCCH	PF00642.24	3e-07	1	1
ENSMUSP00000074533	zf-CCCH	PF00642.24	3e-07	1	1
ENSMUSP00000074533	ResIII	PF04851.15	8.3e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000075012	-	6218	XM_006534504	ENSMUSP00000074533	1965 (aa)	XP_006534567	Q6DFV5
ENSMUST00000153080	-	553	-	-	- (aa)	-	-
ENSMUST00000100305	-	5953	-	ENSMUSP00000097878	1616 (aa)	-	Q6DFV5
ENSMUST00000106746	-	13147	XM_006534507	ENSMUSP00000102357	1964 (aa)	XP_006534570	Q6DFV5
ENSMUST00000141730	-	687	-	-	- (aa)	-	-
ENSMUST00000154847	-	859	-	-	- (aa)	-	-
ENSMUST00000133862	-	3753	-	ENSMUSP00000117498	935 (aa)	-	A2AAU5
ENSMUST00000143634	-	937	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020721	Helz	100	90.687	ENSG00000198265	HELZ	100	94.356	Homo_sapiens
ENSMUSG00000020721	Helz	83	71.470	ENSAPOG00000001626	helz	100	58.567	Acanthochromis_polyacanthus
ENSMUSG00000020721	Helz	100	89.883	ENSAMEG00000018396	HELZ	100	89.797	Ailuropoda_melanoleuca
ENSMUSG00000020721	Helz	79	72.880	ENSAOCG00000018131	helz	88	73.395	Amphiprion_ocellaris
ENSMUSG00000020721	Helz	95	72.327	ENSATEG00000007191	helz	100	58.314	Anabas_testudineus
ENSMUSG00000020721	Helz	99	83.656	ENSAPLG00000007762	HELZ	100	81.564	Anas_platyrhynchos
ENSMUSG00000020721	Helz	99	80.633	ENSACAG00000000206	HELZ	100	79.009	Anolis_carolinensis
ENSMUSG00000020721	Helz	100	90.326	ENSANAG00000037949	HELZ	100	90.173	Aotus_nancymaae
ENSMUSG00000020721	Helz	99	65.434	ENSAMXG00000020742	helz	100	61.172	Astyanax_mexicanus
ENSMUSG00000020721	Helz	99	89.500	ENSBTAG00000004746	HELZ	100	88.199	Bos_taurus
ENSMUSG00000020721	Helz	100	90.580	ENSCJAG00000032527	HELZ	100	90.428	Callithrix_jacchus
ENSMUSG00000020721	Helz	100	89.980	ENSCAFG00000011422	HELZ	100	89.893	Canis_familiaris
ENSMUSG00000020721	Helz	100	89.278	ENSCAFG00020026103	HELZ	100	89.193	Canis_lupus_dingo
ENSMUSG00000020721	Helz	99	88.062	ENSCHIG00000002760	HELZ	100	86.470	Capra_hircus
ENSMUSG00000020721	Helz	92	93.902	ENSTSYG00000009414	HELZ	94	93.727	Carlito_syrichta
ENSMUSG00000020721	Helz	82	79.536	ENSCAPG00000013940	HELZ	96	82.329	Cavia_aperea
ENSMUSG00000020721	Helz	99	91.182	ENSCPOG00000014911	HELZ	98	90.458	Cavia_porcellus
ENSMUSG00000020721	Helz	100	90.433	ENSCATG00000037268	HELZ	100	90.331	Cercocebus_atys
ENSMUSG00000020721	Helz	99	90.682	ENSCLAG00000004638	HELZ	100	89.415	Chinchilla_lanigera
ENSMUSG00000020721	Helz	100	90.636	ENSCSAG00000004152	HELZ	100	90.534	Chlorocebus_sabaeus
ENSMUSG00000020721	Helz	99	83.645	ENSCPBG00000009548	HELZ	100	81.961	Chrysemys_picta_bellii
ENSMUSG00000020721	Helz	96	91.960	ENSCANG00000029169	HELZ	99	91.688	Colobus_angolensis_palliatus
ENSMUSG00000020721	Helz	100	94.046	ENSCGRG00001015066	Helz	100	93.893	Cricetulus_griseus_chok1gshd
ENSMUSG00000020721	Helz	100	94.043	ENSCGRG00000012094	Helz	100	93.890	Cricetulus_griseus_crigri
ENSMUSG00000020721	Helz	99	62.369	ENSCSEG00000012232	helz	100	58.111	Cynoglossus_semilaevis
ENSMUSG00000020721	Helz	99	65.096	ENSDARG00000030560	helz	100	60.481	Danio_rerio
ENSMUSG00000020721	Helz	100	89.171	ENSDNOG00000007899	HELZ	100	89.070	Dasypus_novemcinctus
ENSMUSG00000020721	Helz	61	96.360	ENSEASG00005015902	HELZ	95	96.360	Equus_asinus_asinus
ENSMUSG00000020721	Helz	100	89.781	ENSECAG00000010404	HELZ	100	89.695	Equus_caballus
ENSMUSG00000020721	Helz	52	97.980	ENSEEUG00000010327	-	56	97.980	Erinaceus_europaeus
ENSMUSG00000020721	Helz	99	63.509	ENSELUG00000014335	helz	100	60.317	Esox_lucius
ENSMUSG00000020721	Helz	100	89.262	ENSFCAG00000011711	HELZ	100	89.075	Felis_catus
ENSMUSG00000020721	Helz	99	83.354	ENSFALG00000002404	HELZ	100	81.168	Ficedula_albicollis
ENSMUSG00000020721	Helz	100	90.025	ENSFDAG00000008065	HELZ	100	90.433	Fukomys_damarensis
ENSMUSG00000020721	Helz	100	66.489	ENSFHEG00000016609	helz	99	66.042	Fundulus_heteroclitus
ENSMUSG00000020721	Helz	90	67.775	ENSGMOG00000009758	helz	97	69.102	Gadus_morhua
ENSMUSG00000020721	Helz	94	84.276	ENSGALG00000027152	HELZ	99	81.866	Gallus_gallus
ENSMUSG00000020721	Helz	85	69.706	ENSGACG00000018530	helz	97	68.301	Gasterosteus_aculeatus
ENSMUSG00000020721	Helz	76	80.684	ENSGAGG00000006506	-	99	82.489	Gopherus_agassizii
ENSMUSG00000020721	Helz	100	90.534	ENSGGOG00000012312	HELZ	100	90.382	Gorilla_gorilla
ENSMUSG00000020721	Helz	99	64.127	ENSHBUG00000015322	helz	100	58.401	Haplochromis_burtoni
ENSMUSG00000020721	Helz	97	95.179	ENSHGLG00000000732	HELZ	100	95.179	Heterocephalus_glaber_female
ENSMUSG00000020721	Helz	100	90.585	ENSHGLG00100002144	HELZ	100	90.433	Heterocephalus_glaber_male
ENSMUSG00000020721	Helz	99	63.164	ENSHCOG00000019617	helz	100	57.527	Hippocampus_comes
ENSMUSG00000020721	Helz	91	73.363	ENSIPUG00000003010	helz	96	72.254	Ictalurus_punctatus
ENSMUSG00000020721	Helz	100	90.789	ENSSTOG00000007818	HELZ	100	90.636	Ictidomys_tridecemlineatus
ENSMUSG00000020721	Helz	99	88.993	ENSJJAG00000019941	Helz	100	87.837	Jaculus_jaculus
ENSMUSG00000020721	Helz	93	72.259	ENSKMAG00000017251	helz	100	57.798	Kryptolebias_marmoratus
ENSMUSG00000020721	Helz	99	71.801	ENSLACG00000010742	HELZ	100	69.277	Latimeria_chalumnae
ENSMUSG00000020721	Helz	99	69.994	ENSLOCG00000013617	helz	100	66.132	Lepisosteus_oculatus
ENSMUSG00000020721	Helz	100	88.759	ENSLAFG00000003860	HELZ	100	88.573	Loxodonta_africana
ENSMUSG00000020721	Helz	100	90.636	ENSMFAG00000045166	HELZ	100	90.534	Macaca_fascicularis
ENSMUSG00000020721	Helz	100	90.636	ENSMMUG00000002959	HELZ	100	90.534	Macaca_mulatta
ENSMUSG00000020721	Helz	100	90.585	ENSMNEG00000037121	HELZ	100	90.483	Macaca_nemestrina
ENSMUSG00000020721	Helz	100	90.636	ENSMLEG00000039575	HELZ	100	90.534	Mandrillus_leucophaeus
ENSMUSG00000020721	Helz	83	72.371	ENSMAMG00000016108	helz	97	61.618	Mastacembelus_armatus
ENSMUSG00000020721	Helz	99	64.067	ENSMZEG00005001957	helz	100	58.278	Maylandia_zebra
ENSMUSG00000020721	Helz	99	82.158	ENSMGAG00000007422	HELZ	100	80.426	Meleagris_gallopavo
ENSMUSG00000020721	Helz	100	92.672	ENSMAUG00000013803	Helz	100	92.468	Mesocricetus_auratus
ENSMUSG00000020721	Helz	100	91.043	ENSMICG00000013321	HELZ	100	90.941	Microcebus_murinus
ENSMUSG00000020721	Helz	97	87.870	ENSMODG00000004034	HELZ	99	87.924	Monodelphis_domestica
ENSMUSG00000020721	Helz	100	98.515	MGP_CAROLIEiJ_G0017337	Helz	100	98.515	Mus_caroli
ENSMUSG00000020721	Helz	100	97.812	MGP_PahariEiJ_G0018467	Helz	100	97.812	Mus_pahari
ENSMUSG00000020721	Helz	100	98.524	MGP_SPRETEiJ_G0018181	Helz	100	98.575	Mus_spretus
ENSMUSG00000020721	Helz	99	88.875	ENSMPUG00000014672	HELZ	100	87.538	Mustela_putorius_furo
ENSMUSG00000020721	Helz	99	90.443	ENSMLUG00000000962	HELZ	100	89.036	Myotis_lucifugus
ENSMUSG00000020721	Helz	100	90.738	ENSNGAG00000023219	Helz	100	90.840	Nannospalax_galili
ENSMUSG00000020721	Helz	85	63.905	ENSNBRG00000003933	helz	94	63.475	Neolamprologus_brichardi
ENSMUSG00000020721	Helz	100	90.280	ENSNLEG00000000218	HELZ	100	90.178	Nomascus_leucogenys
ENSMUSG00000020721	Helz	99	64.827	ENSONIG00000006486	helz	100	59.281	Oreochromis_niloticus
ENSMUSG00000020721	Helz	99	83.076	ENSOANG00000008056	HELZ	100	81.832	Ornithorhynchus_anatinus
ENSMUSG00000020721	Helz	97	89.046	ENSOCUG00000008856	HELZ	100	88.749	Oryctolagus_cuniculus
ENSMUSG00000020721	Helz	99	64.127	ENSORLG00000013894	helz	100	58.794	Oryzias_latipes
ENSMUSG00000020721	Helz	96	66.118	ENSORLG00020021251	helz	99	61.653	Oryzias_latipes_hni
ENSMUSG00000020721	Helz	99	63.794	ENSORLG00015022086	helz	100	58.163	Oryzias_latipes_hsok
ENSMUSG00000020721	Helz	99	64.290	ENSOMEG00000008739	helz	99	58.683	Oryzias_melastigma
ENSMUSG00000020721	Helz	100	90.173	ENSOGAG00000002482	HELZ	100	90.428	Otolemur_garnettii
ENSMUSG00000020721	Helz	99	88.195	ENSOARG00000015884	HELZ	100	86.629	Ovis_aries
ENSMUSG00000020721	Helz	100	90.636	ENSPPAG00000036899	HELZ	100	90.483	Pan_paniscus
ENSMUSG00000020721	Helz	100	89.364	ENSPPRG00000024752	HELZ	100	89.177	Panthera_pardus
ENSMUSG00000020721	Helz	100	88.855	ENSPTIG00000020571	HELZ	100	88.669	Panthera_tigris_altaica
ENSMUSG00000020721	Helz	100	90.479	ENSPTRG00000009562	HELZ	100	90.326	Pan_troglodytes
ENSMUSG00000020721	Helz	91	90.613	ENSPANG00000020569	HELZ	100	90.500	Papio_anubis
ENSMUSG00000020721	Helz	99	68.044	ENSPKIG00000006157	helz	100	63.914	Paramormyrops_kingsleyae
ENSMUSG00000020721	Helz	99	84.303	ENSPSIG00000005225	HELZ	100	82.188	Pelodiscus_sinensis
ENSMUSG00000020721	Helz	96	62.437	ENSPMGG00000002314	helz	77	67.645	Periophthalmus_magnuspinnatus
ENSMUSG00000020721	Helz	99	65.319	ENSPFOG00000013386	helz	100	60.099	Poecilia_formosa
ENSMUSG00000020721	Helz	99	64.110	ENSPLAG00000020664	helz	98	58.784	Poecilia_latipinna
ENSMUSG00000020721	Helz	83	72.038	ENSPMEG00000011144	helz	100	59.447	Poecilia_mexicana
ENSMUSG00000020721	Helz	83	72.029	ENSPREG00000000245	helz	100	59.176	Poecilia_reticulata
ENSMUSG00000020721	Helz	79	93.599	ENSPPYG00000008564	-	100	90.971	Pongo_abelii
ENSMUSG00000020721	Helz	95	90.449	ENSPCAG00000001731	HELZ	95	90.449	Procavia_capensis
ENSMUSG00000020721	Helz	100	89.517	ENSPCOG00000016213	HELZ	100	89.313	Propithecus_coquereli
ENSMUSG00000020721	Helz	99	64.067	ENSPNYG00000018395	helz	100	58.373	Pundamilia_nyererei
ENSMUSG00000020721	Helz	91	73.427	ENSPNAG00000016575	helz	100	61.216	Pygocentrus_nattereri
ENSMUSG00000020721	Helz	100	96.336	ENSRNOG00000003213	Helz	100	96.336	Rattus_norvegicus
ENSMUSG00000020721	Helz	100	89.736	ENSRBIG00000026299	HELZ	100	90.499	Rhinopithecus_bieti
ENSMUSG00000020721	Helz	100	90.585	ENSRROG00000038961	HELZ	100	90.483	Rhinopithecus_roxellana
ENSMUSG00000020721	Helz	100	90.326	ENSSBOG00000033082	HELZ	100	90.275	Saimiri_boliviensis_boliviensis
ENSMUSG00000020721	Helz	99	68.094	ENSSFOG00015005413	helz	100	63.213	Scleropages_formosus
ENSMUSG00000020721	Helz	83	71.024	ENSSMAG00000018328	helz	96	60.776	Scophthalmus_maximus
ENSMUSG00000020721	Helz	95	72.563	ENSSDUG00000011381	helz	100	58.333	Seriola_dumerili
ENSMUSG00000020721	Helz	99	64.036	ENSSLDG00000000611	helz	88	74.277	Seriola_lalandi_dorsalis
ENSMUSG00000020721	Helz	78	86.975	ENSSARG00000004508	HELZ	73	86.975	Sorex_araneus
ENSMUSG00000020721	Helz	99	83.260	ENSSPUG00000011226	HELZ	100	81.240	Sphenodon_punctatus
ENSMUSG00000020721	Helz	95	71.799	ENSSPAG00000012867	helz	100	57.480	Stegastes_partitus
ENSMUSG00000020721	Helz	100	90.132	ENSSSCG00000017272	HELZ	99	91.782	Sus_scrofa
ENSMUSG00000020721	Helz	99	83.531	ENSTGUG00000004401	HELZ	100	81.260	Taeniopygia_guttata
ENSMUSG00000020721	Helz	99	63.117	ENSTRUG00000000488	helz	99	59.207	Takifugu_rubripes
ENSMUSG00000020721	Helz	99	62.855	ENSTNIG00000014131	helz	93	68.429	Tetraodon_nigroviridis
ENSMUSG00000020721	Helz	80	96.489	ENSTBEG00000003140	HELZ	82	96.489	Tupaia_belangeri
ENSMUSG00000020721	Helz	99	89.700	ENSTTRG00000016778	HELZ	100	88.669	Tursiops_truncatus
ENSMUSG00000020721	Helz	99	90.625	ENSUAMG00000005560	HELZ	99	90.304	Ursus_americanus
ENSMUSG00000020721	Helz	100	88.714	ENSUMAG00000018753	HELZ	99	92.428	Ursus_maritimus
ENSMUSG00000020721	Helz	96	88.960	ENSVPAG00000001848	HELZ	100	88.924	Vicugna_pacos
ENSMUSG00000020721	Helz	100	89.934	ENSVVUG00000006563	HELZ	100	89.848	Vulpes_vulpes
ENSMUSG00000020721	Helz	99	76.592	ENSXETG00000015395	helz	100	73.087	Xenopus_tropicalis
ENSMUSG00000020721	Helz	100	58.815	ENSXMAG00000006535	helz	100	58.532	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	20305823.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0035194	posttranscriptional gene silencing by RNA	21873635.	IBA	Process
GO:0043186	P granule	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function