EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000134209	-	434	-	-	- (aa)	-	-
ENSMUST00000143351	-	649	-	-	- (aa)	-	-
ENSMUST00000138998	-	760	-	-	- (aa)	-	-
ENSMUST00000127126	-	478	-	-	- (aa)	-	-
ENSMUST00000021085	-	2230	XM_006533670	ENSMUSP00000021085	656 (aa)	XP_006533733	Q8R480
ENSMUST00000135893	-	600	-	-	- (aa)	-	-
ENSMUST00000144473	-	823	-	ENSMUSP00000116069	274 (aa)	-	Z4YLV0
ENSMUST00000128745	-	452	-	-	- (aa)	-	-
ENSMUST00000140986	-	841	-	ENSMUSP00000117333	280 (aa)	-	Z4YM95

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005643	nuclear pore	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	15995708.	ISA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	15995708.	ISA	Component
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006935	chemotaxis	15995708.	IDA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0019221	cytokine-mediated signaling pathway	15995708.	ISA	Process
GO:0030032	lamellipodium assembly	15995708.	IDA	Process
GO:0031080	nuclear pore outer ring	21873635.	IBA	Component
GO:0031080	nuclear pore outer ring	-	ISO	Component
GO:0031727	CCR2 chemokine receptor binding	15995708.	ISA	Function
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0048246	macrophage chemotaxis	15995708.	IDA	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0072006	nephron development	-	ISO	Process