EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020770 (Gene tree)
Gene ID: 217331
Gene Symbol: Unk
Alias: B230379M23Rik|Zc3h5
Full Name: unkempt family zinc finger
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 30893 bases
Position: chr11:116030322-116061214
Accession: 2442456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000102060	zf-CCCH	PF00642.24	0.00052	1	1
ENSMUSP00000021116	zf-CCCH	PF00642.24	0.00053	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000176212	-	817	-	-	- (aa)	-	-
ENSMUST00000150759	-	3692	-	-	- (aa)	-	-
ENSMUST00000176788	-	471	-	-	- (aa)	-	-
ENSMUST00000175702	-	724	-	-	- (aa)	-	-
ENSMUST00000140683	-	600	-	-	- (aa)	-	-
ENSMUST00000021116	-	3735	XM_006533088	ENSMUSP00000021116	810 (aa)	XP_006533151	Q8BL48
ENSMUST00000106452	-	3696	-	ENSMUSP00000102060	797 (aa)	-	Q8BL48

Gene Model

Click here to download ENSMUSG00000020770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020770's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000020770	Unk	80	77.627	ENSMUSG00000015127	Unkl	91	77.627

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020770	Unk	98	95.322	ENSG00000132478	UNK	97	100.000	Homo_sapiens
ENSMUSG00000020770	Unk	98	95.575	ENSAMEG00000009769	UNK	89	95.575	Ailuropoda_melanoleuca
ENSMUSG00000020770	Unk	96	57.431	ENSATEG00000004212	unk	94	57.522	Anabas_testudineus
ENSMUSG00000020770	Unk	96	87.773	ENSAPLG00000014891	UNK	100	87.773	Anas_platyrhynchos
ENSMUSG00000020770	Unk	100	84.281	ENSACAG00000007303	UNK	98	85.130	Anolis_carolinensis
ENSMUSG00000020770	Unk	98	95.322	ENSANAG00000017139	UNK	98	95.322	Aotus_nancymaae
ENSMUSG00000020770	Unk	62	62.933	ENSAMXG00000031804	unk	55	63.022	Astyanax_mexicanus
ENSMUSG00000020770	Unk	98	94.943	ENSBTAG00000016287	UNK	98	94.943	Bos_taurus
ENSMUSG00000020770	Unk	98	95.322	ENSCJAG00000014056	UNK	98	95.322	Callithrix_jacchus
ENSMUSG00000020770	Unk	98	95.322	ENSCAFG00000004925	UNK	89	95.322	Canis_familiaris
ENSMUSG00000020770	Unk	98	95.322	ENSCAFG00020004454	UNK	98	95.322	Canis_lupus_dingo
ENSMUSG00000020770	Unk	98	94.564	ENSCHIG00000015385	UNK	98	94.564	Capra_hircus
ENSMUSG00000020770	Unk	98	95.070	ENSTSYG00000008096	UNK	98	95.070	Carlito_syrichta
ENSMUSG00000020770	Unk	85	97.819	ENSCAPG00000008657	UNK	93	97.819	Cavia_aperea
ENSMUSG00000020770	Unk	98	95.954	ENSCPOG00000012679	UNK	98	95.954	Cavia_porcellus
ENSMUSG00000020770	Unk	98	95.322	ENSCCAG00000031100	UNK	98	95.322	Cebus_capucinus
ENSMUSG00000020770	Unk	98	95.322	ENSCATG00000038041	UNK	98	95.322	Cercocebus_atys
ENSMUSG00000020770	Unk	98	96.334	ENSCLAG00000008106	UNK	98	96.334	Chinchilla_lanigera
ENSMUSG00000020770	Unk	98	95.196	ENSCSAG00000004859	UNK	98	95.196	Chlorocebus_sabaeus
ENSMUSG00000020770	Unk	100	84.764	ENSCPBG00000028046	UNK	99	85.624	Chrysemys_picta_bellii
ENSMUSG00000020770	Unk	98	95.449	ENSCANG00000033795	UNK	98	95.449	Colobus_angolensis_palliatus
ENSMUSG00000020770	Unk	100	97.407	ENSCGRG00001024874	Unk	100	97.407	Cricetulus_griseus_chok1gshd
ENSMUSG00000020770	Unk	100	97.037	ENSCGRG00000008631	Unk	100	97.037	Cricetulus_griseus_crigri
ENSMUSG00000020770	Unk	96	58.077	ENSCSEG00000020209	unk	95	58.450	Cynoglossus_semilaevis
ENSMUSG00000020770	Unk	96	58.621	ENSDARG00000000935	unk	94	59.770	Danio_rerio
ENSMUSG00000020770	Unk	98	94.185	ENSDNOG00000038145	UNK	86	94.185	Dasypus_novemcinctus
ENSMUSG00000020770	Unk	98	96.081	ENSDORG00000008133	Unk	98	96.081	Dipodomys_ordii
ENSMUSG00000020770	Unk	73	86.294	ENSETEG00000019640	UNK	100	84.918	Echinops_telfairi
ENSMUSG00000020770	Unk	98	95.702	ENSEASG00005002430	UNK	98	95.702	Equus_asinus_asinus
ENSMUSG00000020770	Unk	98	95.575	ENSECAG00000024672	UNK	99	95.484	Equus_caballus
ENSMUSG00000020770	Unk	85	100.000	ENSEEUG00000013779	UNK	85	100.000	Erinaceus_europaeus
ENSMUSG00000020770	Unk	96	56.305	ENSELUG00000023290	unk	95	58.000	Esox_lucius
ENSMUSG00000020770	Unk	98	95.070	ENSFCAG00000005757	UNK	98	95.070	Felis_catus
ENSMUSG00000020770	Unk	96	87.629	ENSFALG00000001035	UNK	94	87.629	Ficedula_albicollis
ENSMUSG00000020770	Unk	98	94.697	ENSFDAG00000009316	UNK	98	94.697	Fukomys_damarensis
ENSMUSG00000020770	Unk	83	73.795	ENSGMOG00000014314	unk	81	74.174	Gadus_morhua
ENSMUSG00000020770	Unk	100	85.006	ENSGALG00000002278	UNK	98	85.998	Gallus_gallus
ENSMUSG00000020770	Unk	100	84.764	ENSGAGG00000007411	UNK	98	85.750	Gopherus_agassizii
ENSMUSG00000020770	Unk	98	95.322	ENSGGOG00000009203	UNK	98	95.322	Gorilla_gorilla
ENSMUSG00000020770	Unk	100	96.790	ENSHGLG00000007512	UNK	100	96.790	Heterocephalus_glaber_female
ENSMUSG00000020770	Unk	100	96.790	ENSHGLG00100002318	UNK	100	96.790	Heterocephalus_glaber_male
ENSMUSG00000020770	Unk	96	56.290	ENSIPUG00000004291	UNK	94	58.549	Ictalurus_punctatus
ENSMUSG00000020770	Unk	91	95.277	ENSSTOG00000013344	UNK	97	95.020	Ictidomys_tridecemlineatus
ENSMUSG00000020770	Unk	100	96.543	ENSJJAG00000009816	Unk	100	96.543	Jaculus_jaculus
ENSMUSG00000020770	Unk	100	71.707	ENSLACG00000014044	UNK	97	72.739	Latimeria_chalumnae
ENSMUSG00000020770	Unk	97	66.499	ENSLOCG00000011578	unk	95	66.083	Lepisosteus_oculatus
ENSMUSG00000020770	Unk	98	93.821	ENSLAFG00000022662	UNK	98	93.821	Loxodonta_africana
ENSMUSG00000020770	Unk	98	95.322	ENSMFAG00000037148	UNK	98	95.322	Macaca_fascicularis
ENSMUSG00000020770	Unk	98	95.322	ENSMMUG00000013646	UNK	98	95.322	Macaca_mulatta
ENSMUSG00000020770	Unk	98	95.449	ENSMNEG00000036240	UNK	98	95.449	Macaca_nemestrina
ENSMUSG00000020770	Unk	98	94.943	ENSMLEG00000043327	UNK	98	94.943	Mandrillus_leucophaeus
ENSMUSG00000020770	Unk	96	56.642	ENSMAMG00000001390	unk	94	56.999	Mastacembelus_armatus
ENSMUSG00000020770	Unk	96	85.057	ENSMGAG00000004713	UNK	100	85.057	Meleagris_gallopavo
ENSMUSG00000020770	Unk	100	97.654	ENSMAUG00000011025	Unk	100	97.654	Mesocricetus_auratus
ENSMUSG00000020770	Unk	98	95.449	ENSMICG00000007591	UNK	98	95.449	Microcebus_murinus
ENSMUSG00000020770	Unk	100	97.901	ENSMOCG00000021657	Unk	100	97.901	Microtus_ochrogaster
ENSMUSG00000020770	Unk	96	57.050	ENSMMOG00000004874	unk	94	58.323	Mola_mola
ENSMUSG00000020770	Unk	97	86.469	ENSMODG00000007684	UNK	85	86.563	Monodelphis_domestica
ENSMUSG00000020770	Unk	100	99.506	MGP_CAROLIEiJ_G0017427	Unk	100	99.506	Mus_caroli
ENSMUSG00000020770	Unk	100	98.889	MGP_PahariEiJ_G0018556	Unk	100	98.889	Mus_pahari
ENSMUSG00000020770	Unk	100	99.753	MGP_SPRETEiJ_G0018272	Unk	100	99.753	Mus_spretus
ENSMUSG00000020770	Unk	98	94.207	ENSMPUG00000013806	UNK	98	94.207	Mustela_putorius_furo
ENSMUSG00000020770	Unk	98	94.690	ENSMLUG00000015453	UNK	98	94.690	Myotis_lucifugus
ENSMUSG00000020770	Unk	100	96.790	ENSNGAG00000012366	Unk	100	96.790	Nannospalax_galili
ENSMUSG00000020770	Unk	100	89.506	ENSNLEG00000001120	UNK	98	91.244	Nomascus_leucogenys
ENSMUSG00000020770	Unk	97	86.023	ENSMEUG00000004094	UNK	97	86.242	Notamacropus_eugenii
ENSMUSG00000020770	Unk	100	92.963	ENSOPRG00000012784	UNK	98	93.047	Ochotona_princeps
ENSMUSG00000020770	Unk	98	89.886	ENSODEG00000010183	UNK	98	89.633	Octodon_degus
ENSMUSG00000020770	Unk	98	93.805	ENSOCUG00000014994	UNK	98	93.805	Oryctolagus_cuniculus
ENSMUSG00000020770	Unk	96	55.654	ENSORLG00000028573	unk	94	57.471	Oryzias_latipes
ENSMUSG00000020770	Unk	96	54.242	ENSOMEG00000009977	unk	95	55.727	Oryzias_melastigma
ENSMUSG00000020770	Unk	98	95.322	ENSOGAG00000001922	UNK	90	95.322	Otolemur_garnettii
ENSMUSG00000020770	Unk	98	84.080	ENSOARG00000009548	UNK	97	84.080	Ovis_aries
ENSMUSG00000020770	Unk	98	95.322	ENSPPAG00000032800	UNK	98	95.322	Pan_paniscus
ENSMUSG00000020770	Unk	98	95.322	ENSPPRG00000008948	UNK	98	95.322	Panthera_pardus
ENSMUSG00000020770	Unk	98	95.196	ENSPTIG00000005435	UNK	98	95.196	Panthera_tigris_altaica
ENSMUSG00000020770	Unk	98	95.322	ENSPTRG00000009656	UNK	98	95.322	Pan_troglodytes
ENSMUSG00000020770	Unk	98	95.322	ENSPANG00000020121	UNK	98	95.322	Papio_anubis
ENSMUSG00000020770	Unk	96	56.489	ENSPKIG00000022222	unk	94	58.323	Paramormyrops_kingsleyae
ENSMUSG00000020770	Unk	79	79.514	ENSPSIG00000009640	UNK	100	79.514	Pelodiscus_sinensis
ENSMUSG00000020770	Unk	96	56.997	ENSPMGG00000021574	unk	93	57.687	Periophthalmus_magnuspinnatus
ENSMUSG00000020770	Unk	100	97.654	ENSPEMG00000016145	Unk	100	97.654	Peromyscus_maniculatus_bairdii
ENSMUSG00000020770	Unk	99	89.938	ENSPCIG00000020300	UNK	85	89.822	Phascolarctos_cinereus
ENSMUSG00000020770	Unk	98	95.322	ENSPPYG00000008637	UNK	98	95.322	Pongo_abelii
ENSMUSG00000020770	Unk	88	87.961	ENSPCAG00000004504	UNK	88	87.961	Procavia_capensis
ENSMUSG00000020770	Unk	98	95.449	ENSPCOG00000027411	UNK	98	95.449	Propithecus_coquereli
ENSMUSG00000020770	Unk	92	98.370	ENSPVAG00000008460	UNK	92	98.370	Pteropus_vampyrus
ENSMUSG00000020770	Unk	95	59.477	ENSPNAG00000011973	unk	93	60.052	Pygocentrus_nattereri
ENSMUSG00000020770	Unk	100	98.025	ENSRNOG00000006600	Unk	100	98.025	Rattus_norvegicus
ENSMUSG00000020770	Unk	98	95.575	ENSRBIG00000025523	UNK	98	95.575	Rhinopithecus_bieti
ENSMUSG00000020770	Unk	98	95.449	ENSRROG00000013651	UNK	98	95.449	Rhinopithecus_roxellana
ENSMUSG00000020770	Unk	98	95.322	ENSSBOG00000019483	UNK	98	95.322	Saimiri_boliviensis_boliviensis
ENSMUSG00000020770	Unk	97	89.607	ENSSHAG00000017696	UNK	97	89.708	Sarcophilus_harrisii
ENSMUSG00000020770	Unk	96	56.170	ENSSFOG00015003052	unk	90	60.530	Scleropages_formosus
ENSMUSG00000020770	Unk	96	57.564	ENSSDUG00000012373	unk	94	58.131	Seriola_dumerili
ENSMUSG00000020770	Unk	96	56.760	ENSSLDG00000001990	unk	94	58.015	Seriola_lalandi_dorsalis
ENSMUSG00000020770	Unk	99	81.852	ENSSPUG00000008526	UNK	97	84.347	Sphenodon_punctatus
ENSMUSG00000020770	Unk	98	94.943	ENSSSCG00000017201	UNK	98	94.943	Sus_scrofa
ENSMUSG00000020770	Unk	97	87.245	ENSTGUG00000008279	UNK	98	87.105	Taeniopygia_guttata
ENSMUSG00000020770	Unk	52	98.039	ENSTBEG00000016178	-	53	98.039	Tupaia_belangeri
ENSMUSG00000020770	Unk	92	98.034	ENSTTRG00000015890	UNK	90	98.324	Tursiops_truncatus
ENSMUSG00000020770	Unk	96	91.484	ENSUAMG00000003483	UNK	97	91.484	Ursus_americanus
ENSMUSG00000020770	Unk	96	95.484	ENSUMAG00000010576	UNK	99	95.484	Ursus_maritimus
ENSMUSG00000020770	Unk	56	96.078	ENSVPAG00000011532	-	57	96.078	Vicugna_pacos
ENSMUSG00000020770	Unk	100	98.365	ENSVVUG00000014786	UNK	100	98.365	Vulpes_vulpes
ENSMUSG00000020770	Unk	97	78.003	ENSXETG00000012578	unk	96	78.471	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001764	neuron migration	21873635.	IBA	Process
GO:0001764	neuron migration	25737280.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0005844	polysome	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048667	cell morphogenesis involved in neuron differentiation	21873635.	IBA	Process
GO:0048667	cell morphogenesis involved in neuron differentiation	25737280.	IMP	Process
GO:0048667	cell morphogenesis involved in neuron differentiation	-	ISO	Process
GO:1905538	polysome binding	25737280.	IDA	Function
GO:1990715	mRNA CDS binding	21873635.	IBA	Function
GO:1990715	mRNA CDS binding	25737280.	IDA	Function
GO:1990715	mRNA CDS binding	-	ISO	Function
GO:2000766	negative regulation of cytoplasmic translation	21873635.	IBA	Process
GO:2000766	negative regulation of cytoplasmic translation	-	ISO	Process