EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020780 (Gene tree)
Gene ID: 217337
Gene Symbol: Srp68
Alias: 2610024I03Rik
Full Name: signal recognition particle 68
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 29052
Position: chr11: 116245166-116274217
Accession: 1917447
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000021133	-	2526	-	ENSMUSP00000021133	625 (aa)	-	Q8BMA6
ENSMUST00000127205	-	1979	-	-	- (aa)	-	-
ENSMUST00000128808	-	703	-	-	- (aa)	-	-
ENSMUST00000106425	-	2330	-	ENSMUSP00000102033	587 (aa)	-	A2AAN2

Gene Model

Click here to download ENSMUSG00000020780's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020780's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020780	Srp68	88	32.470	WBGene00010097	srpa-68	89	32.642	Caenorhabditis_elegans
ENSMUSG00000020780	Srp68	90	42.981	FBgn0035947	Srp68	94	43.127	Drosophila_melanogaster
ENSMUSG00000020780	Srp68	100	94.577	ENSG00000167881	SRP68	100	94.896	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005047	signal recognition particle binding	21873635.	IBA	Function
GO:0005047	signal recognition particle binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	21873635.	IBA	Component
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	-	IEA	Process
GO:0008312	7S RNA binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030942	endoplasmic reticulum signal peptide binding	-	IEA	Function
GO:0042493	response to drug	-	ISO	Process
GO:0043022	ribosome binding	-	ISO	Function
GO:0048500	signal recognition particle	-	ISO	Component