EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020781 (Gene tree)
Gene ID: 76265
Gene Symbol: Tsen54
Alias: 0610034P02Rik
Full Name: tRNA splicing endonuclease subunit 54
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 8371 bases
Position: chr11:115814724-115823094
Accession: 1923515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000102090	tRNA_int_end_N2	PF12928.7	1.3e-18	1	1
ENSMUSP00000021134	tRNA_int_end_N2	PF12928.7	1.5e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000141748	-	858	-	-	- (aa)	-	-
ENSMUST00000129765	-	522	-	-	- (aa)	-	-
ENSMUST00000128266	-	803	-	-	- (aa)	-	-
ENSMUST00000154304	-	963	-	ENSMUSP00000116955	153 (aa)	-	B0QZP4
ENSMUST00000106481	-	1862	-	ENSMUSP00000102090	486 (aa)	-	Q8C2A2
ENSMUST00000136343	-	825	-	ENSMUSP00000120506	275 (aa)	-	B1ATA6
ENSMUST00000021134	-	1979	XM_006534415	ENSMUSP00000021134	525 (aa)	XP_006534478	Q8C2A2
ENSMUST00000157061	-	494	-	ENSMUSP00000118342	165 (aa)	-	F6X5E8

Gene Model

Click here to download ENSMUSG00000020781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020781's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020781	Tsen54	100	80.418	ENSG00000182173	TSEN54	99	88.732	Homo_sapiens
ENSMUSG00000020781	Tsen54	97	46.911	ENSAPOG00000009659	tsen54	99	44.342	Acanthochromis_polyacanthus
ENSMUSG00000020781	Tsen54	99	76.792	ENSAMEG00000009414	TSEN54	99	77.358	Ailuropoda_melanoleuca
ENSMUSG00000020781	Tsen54	97	46.050	ENSAOCG00000000152	tsen54	95	46.050	Amphiprion_ocellaris
ENSMUSG00000020781	Tsen54	97	45.857	ENSAPEG00000018931	tsen54	94	45.857	Amphiprion_percula
ENSMUSG00000020781	Tsen54	97	44.275	ENSATEG00000019860	tsen54	97	44.762	Anabas_testudineus
ENSMUSG00000020781	Tsen54	86	52.928	ENSAPLG00000009419	TSEN54	100	52.928	Anas_platyrhynchos
ENSMUSG00000020781	Tsen54	99	53.030	ENSACAG00000006714	TSEN54	99	53.030	Anolis_carolinensis
ENSMUSG00000020781	Tsen54	99	79.576	ENSANAG00000024061	TSEN54	99	80.000	Aotus_nancymaae
ENSMUSG00000020781	Tsen54	97	46.050	ENSACLG00000019800	tsen54	96	46.065	Astatotilapia_calliptera
ENSMUSG00000020781	Tsen54	97	47.266	ENSAMXG00000006546	tsen54	96	47.266	Astyanax_mexicanus
ENSMUSG00000020781	Tsen54	100	78.868	ENSBTAG00000000824	TSEN54	100	79.661	Bos_taurus
ENSMUSG00000020781	Tsen54	99	78.035	ENSCJAG00000014278	TSEN54	99	78.476	Callithrix_jacchus
ENSMUSG00000020781	Tsen54	100	79.473	ENSCAFG00000004798	TSEN54	100	80.038	Canis_familiaris
ENSMUSG00000020781	Tsen54	100	79.473	ENSCAFG00020000312	TSEN54	100	80.038	Canis_lupus_dingo
ENSMUSG00000020781	Tsen54	100	80.190	ENSCHIG00000019908	TSEN54	100	80.190	Capra_hircus
ENSMUSG00000020781	Tsen54	86	75.165	ENSTSYG00000037439	TSEN54	100	75.824	Carlito_syrichta
ENSMUSG00000020781	Tsen54	99	78.613	ENSCCAG00000036624	TSEN54	99	78.667	Cebus_capucinus
ENSMUSG00000020781	Tsen54	97	80.273	ENSCATG00000042877	TSEN54	99	80.381	Cercocebus_atys
ENSMUSG00000020781	Tsen54	97	80.822	ENSCLAG00000002924	TSEN54	99	80.725	Chinchilla_lanigera
ENSMUSG00000020781	Tsen54	100	79.658	ENSCSAG00000004809	TSEN54	100	80.038	Chlorocebus_sabaeus
ENSMUSG00000020781	Tsen54	99	55.410	ENSCPBG00000028071	TSEN54	99	55.410	Chrysemys_picta_bellii
ENSMUSG00000020781	Tsen54	100	79.468	ENSCANG00000028053	TSEN54	100	79.468	Colobus_angolensis_palliatus
ENSMUSG00000020781	Tsen54	100	89.333	ENSCGRG00001020029	Tsen54	100	89.333	Cricetulus_griseus_chok1gshd
ENSMUSG00000020781	Tsen54	84	88.235	ENSCGRG00000016289	Tsen54	100	88.235	Cricetulus_griseus_crigri
ENSMUSG00000020781	Tsen54	80	38.515	ENSCSEG00000020586	tsen54	99	38.515	Cynoglossus_semilaevis
ENSMUSG00000020781	Tsen54	80	42.553	ENSDARG00000036844	tsen54	99	44.444	Danio_rerio
ENSMUSG00000020781	Tsen54	100	74.576	ENSDNOG00000018452	TSEN54	100	76.460	Dasypus_novemcinctus
ENSMUSG00000020781	Tsen54	100	81.143	ENSDORG00000004073	Tsen54	100	81.143	Dipodomys_ordii
ENSMUSG00000020781	Tsen54	97	35.926	ENSEBUG00000005203	TSEN54	95	35.926	Eptatretus_burgeri
ENSMUSG00000020781	Tsen54	100	79.245	ENSEASG00005000579	TSEN54	100	79.245	Equus_asinus_asinus
ENSMUSG00000020781	Tsen54	100	79.434	ENSECAG00000004924	TSEN54	100	79.434	Equus_caballus
ENSMUSG00000020781	Tsen54	86	71.772	ENSEEUG00000008467	TSEN54	100	72.210	Erinaceus_europaeus
ENSMUSG00000020781	Tsen54	97	43.152	ENSELUG00000017703	tsen54	90	43.152	Esox_lucius
ENSMUSG00000020781	Tsen54	99	79.167	ENSFCAG00000023712	TSEN54	99	79.735	Felis_catus
ENSMUSG00000020781	Tsen54	95	51.277	ENSFALG00000001119	TSEN54	98	50.752	Ficedula_albicollis
ENSMUSG00000020781	Tsen54	86	80.401	ENSFDAG00000019090	TSEN54	99	80.401	Fukomys_damarensis
ENSMUSG00000020781	Tsen54	97	46.449	ENSFHEG00000005470	tsen54	96	46.449	Fundulus_heteroclitus
ENSMUSG00000020781	Tsen54	76	46.429	ENSGMOG00000013146	tsen54	92	46.429	Gadus_morhua
ENSMUSG00000020781	Tsen54	95	49.016	ENSGALG00000047163	TSEN54	98	49.016	Gallus_gallus
ENSMUSG00000020781	Tsen54	99	46.476	ENSGAFG00000005111	tsen54	99	46.286	Gambusia_affinis
ENSMUSG00000020781	Tsen54	96	43.992	ENSGACG00000014987	tsen54	99	43.992	Gasterosteus_aculeatus
ENSMUSG00000020781	Tsen54	100	55.576	ENSGAGG00000006825	TSEN54	99	55.576	Gopherus_agassizii
ENSMUSG00000020781	Tsen54	97	79.724	ENSGGOG00000009417	TSEN54	100	80.118	Gorilla_gorilla
ENSMUSG00000020781	Tsen54	87	44.255	ENSHBUG00000018296	tsen54	99	39.588	Haplochromis_burtoni
ENSMUSG00000020781	Tsen54	100	81.905	ENSHGLG00000007979	TSEN54	100	81.905	Heterocephalus_glaber_female
ENSMUSG00000020781	Tsen54	100	80.952	ENSHGLG00100005497	TSEN54	100	80.952	Heterocephalus_glaber_male
ENSMUSG00000020781	Tsen54	80	42.141	ENSHCOG00000007481	tsen54	99	42.141	Hippocampus_comes
ENSMUSG00000020781	Tsen54	99	41.011	ENSIPUG00000000590	tsen54	99	41.948	Ictalurus_punctatus
ENSMUSG00000020781	Tsen54	100	78.286	ENSSTOG00000012883	TSEN54	100	78.286	Ictidomys_tridecemlineatus
ENSMUSG00000020781	Tsen54	100	82.922	ENSJJAG00000007365	Tsen54	100	82.922	Jaculus_jaculus
ENSMUSG00000020781	Tsen54	97	46.780	ENSKMAG00000006944	tsen54	97	46.780	Kryptolebias_marmoratus
ENSMUSG00000020781	Tsen54	97	43.186	ENSLBEG00000004199	tsen54	97	43.378	Labrus_bergylta
ENSMUSG00000020781	Tsen54	97	46.958	ENSLACG00000009497	TSEN54	100	46.958	Latimeria_chalumnae
ENSMUSG00000020781	Tsen54	97	46.692	ENSLOCG00000011191	tsen54	97	47.529	Lepisosteus_oculatus
ENSMUSG00000020781	Tsen54	99	73.913	ENSLAFG00000011655	TSEN54	99	73.913	Loxodonta_africana
ENSMUSG00000020781	Tsen54	100	79.848	ENSMFAG00000000712	TSEN54	100	80.228	Macaca_fascicularis
ENSMUSG00000020781	Tsen54	100	79.658	ENSMNEG00000029199	TSEN54	100	80.038	Macaca_nemestrina
ENSMUSG00000020781	Tsen54	86	78.540	ENSMLEG00000044168	TSEN54	88	78.982	Mandrillus_leucophaeus
ENSMUSG00000020781	Tsen54	97	44.146	ENSMAMG00000019773	tsen54	97	44.867	Mastacembelus_armatus
ENSMUSG00000020781	Tsen54	97	46.050	ENSMZEG00005000884	tsen54	96	46.050	Maylandia_zebra
ENSMUSG00000020781	Tsen54	99	49.057	ENSMGAG00000009556	TSEN54	99	49.057	Meleagris_gallopavo
ENSMUSG00000020781	Tsen54	100	88.952	ENSMAUG00000016838	Tsen54	100	88.952	Mesocricetus_auratus
ENSMUSG00000020781	Tsen54	100	78.327	ENSMICG00000044012	TSEN54	100	79.087	Microcebus_murinus
ENSMUSG00000020781	Tsen54	100	89.905	ENSMOCG00000021585	Tsen54	100	89.905	Microtus_ochrogaster
ENSMUSG00000020781	Tsen54	73	63.636	ENSMMOG00000020189	tsen54	85	63.636	Mola_mola
ENSMUSG00000020781	Tsen54	98	64.916	ENSMODG00000007438	TSEN54	98	64.880	Monodelphis_domestica
ENSMUSG00000020781	Tsen54	97	44.190	ENSMALG00000020573	tsen54	97	44.318	Monopterus_albus
ENSMUSG00000020781	Tsen54	100	97.524	MGP_CAROLIEiJ_G0017417	Tsen54	100	97.524	Mus_caroli
ENSMUSG00000020781	Tsen54	100	95.679	MGP_PahariEiJ_G0018547	Tsen54	100	95.679	Mus_pahari
ENSMUSG00000020781	Tsen54	100	99.048	MGP_SPRETEiJ_G0018262	Tsen54	100	99.048	Mus_spretus
ENSMUSG00000020781	Tsen54	100	77.778	ENSMPUG00000013870	TSEN54	100	78.154	Mustela_putorius_furo
ENSMUSG00000020781	Tsen54	100	75.518	ENSMLUG00000015298	TSEN54	100	76.083	Myotis_lucifugus
ENSMUSG00000020781	Tsen54	100	84.979	ENSNGAG00000015673	Tsen54	100	84.979	Nannospalax_galili
ENSMUSG00000020781	Tsen54	89	61.915	ENSMEUG00000011908	TSEN54	100	61.915	Notamacropus_eugenii
ENSMUSG00000020781	Tsen54	100	73.055	ENSOPRG00000012513	TSEN54	100	73.055	Ochotona_princeps
ENSMUSG00000020781	Tsen54	97	45.785	ENSONIG00000009543	tsen54	96	45.785	Oreochromis_niloticus
ENSMUSG00000020781	Tsen54	99	70.732	ENSOCUG00000009875	TSEN54	99	71.857	Oryctolagus_cuniculus
ENSMUSG00000020781	Tsen54	97	44.970	ENSORLG00000000852	tsen54	97	44.970	Oryzias_latipes
ENSMUSG00000020781	Tsen54	97	44.970	ENSORLG00020018221	tsen54	97	44.970	Oryzias_latipes_hni
ENSMUSG00000020781	Tsen54	97	44.773	ENSORLG00015009413	tsen54	98	44.773	Oryzias_latipes_hsok
ENSMUSG00000020781	Tsen54	97	44.618	ENSOMEG00000014402	tsen54	94	44.618	Oryzias_melastigma
ENSMUSG00000020781	Tsen54	100	74.715	ENSOGAG00000001442	TSEN54	100	74.715	Otolemur_garnettii
ENSMUSG00000020781	Tsen54	86	74.342	ENSOARG00000010361	TSEN54	100	75.274	Ovis_aries
ENSMUSG00000020781	Tsen54	94	79.637	ENSPPAG00000043519	TSEN54	100	79.637	Pan_paniscus
ENSMUSG00000020781	Tsen54	99	78.977	ENSPPRG00000009162	TSEN54	99	79.545	Panthera_pardus
ENSMUSG00000020781	Tsen54	86	77.434	ENSPTIG00000019312	TSEN54	96	77.876	Panthera_tigris_altaica
ENSMUSG00000020781	Tsen54	100	80.228	ENSPTRG00000009646	TSEN54	100	80.608	Pan_troglodytes
ENSMUSG00000020781	Tsen54	99	79.619	ENSPANG00000020133	TSEN54	99	80.000	Papio_anubis
ENSMUSG00000020781	Tsen54	97	45.931	ENSPKIG00000023018	tsen54	100	46.241	Paramormyrops_kingsleyae
ENSMUSG00000020781	Tsen54	80	52.304	ENSPSIG00000012807	TSEN54	99	52.304	Pelodiscus_sinensis
ENSMUSG00000020781	Tsen54	92	35.887	ENSPMGG00000019578	tsen54	99	35.887	Periophthalmus_magnuspinnatus
ENSMUSG00000020781	Tsen54	100	88.952	ENSPEMG00000014857	Tsen54	100	88.952	Peromyscus_maniculatus_bairdii
ENSMUSG00000020781	Tsen54	99	46.617	ENSPFOG00000022740	tsen54	99	46.992	Poecilia_formosa
ENSMUSG00000020781	Tsen54	99	46.692	ENSPLAG00000014847	tsen54	99	47.070	Poecilia_latipinna
ENSMUSG00000020781	Tsen54	99	46.503	ENSPMEG00000022876	tsen54	99	46.881	Poecilia_mexicana
ENSMUSG00000020781	Tsen54	99	45.591	ENSPREG00000013090	tsen54	99	45.966	Poecilia_reticulata
ENSMUSG00000020781	Tsen54	91	74.322	ENSPPYG00000008629	TSEN54	100	74.530	Pongo_abelii
ENSMUSG00000020781	Tsen54	95	67.984	ENSPCAG00000002093	TSEN54	99	67.984	Procavia_capensis
ENSMUSG00000020781	Tsen54	99	80.688	ENSPCOG00000027880	TSEN54	100	81.369	Propithecus_coquereli
ENSMUSG00000020781	Tsen54	100	79.473	ENSPVAG00000008446	TSEN54	100	79.473	Pteropus_vampyrus
ENSMUSG00000020781	Tsen54	92	45.272	ENSPNYG00000010217	tsen54	99	45.272	Pundamilia_nyererei
ENSMUSG00000020781	Tsen54	97	44.256	ENSPNAG00000003770	tsen54	97	44.256	Pygocentrus_nattereri
ENSMUSG00000020781	Tsen54	100	92.762	ENSRNOG00000004598	Tsen54	100	92.762	Rattus_norvegicus
ENSMUSG00000020781	Tsen54	100	79.848	ENSRBIG00000043040	TSEN54	100	79.848	Rhinopithecus_bieti
ENSMUSG00000020781	Tsen54	100	79.658	ENSRROG00000030797	TSEN54	100	79.658	Rhinopithecus_roxellana
ENSMUSG00000020781	Tsen54	99	75.429	ENSSBOG00000013543	TSEN54	99	75.810	Saimiri_boliviensis_boliviensis
ENSMUSG00000020781	Tsen54	99	63.806	ENSSHAG00000018127	TSEN54	98	63.806	Sarcophilus_harrisii
ENSMUSG00000020781	Tsen54	81	42.494	ENSSFOG00015004093	tsen54	100	42.725	Scleropages_formosus
ENSMUSG00000020781	Tsen54	79	60.714	ENSSMAG00000012449	tsen54	99	43.258	Scophthalmus_maximus
ENSMUSG00000020781	Tsen54	97	44.381	ENSSDUG00000021506	tsen54	97	44.381	Seriola_dumerili
ENSMUSG00000020781	Tsen54	97	45.143	ENSSLDG00000016303	tsen54	97	45.143	Seriola_lalandi_dorsalis
ENSMUSG00000020781	Tsen54	86	51.174	ENSSPUG00000008988	TSEN54	100	50.564	Sphenodon_punctatus
ENSMUSG00000020781	Tsen54	92	45.399	ENSSPAG00000008098	-	99	45.399	Stegastes_partitus
ENSMUSG00000020781	Tsen54	80	41.135	ENSSPAG00000008047	tsen54	99	41.135	Stegastes_partitus
ENSMUSG00000020781	Tsen54	100	78.719	ENSSSCG00000036852	TSEN54	100	79.284	Sus_scrofa
ENSMUSG00000020781	Tsen54	86	52.203	ENSTGUG00000008548	TSEN54	100	52.203	Taeniopygia_guttata
ENSMUSG00000020781	Tsen54	97	46.484	ENSTRUG00000004230	tsen54	96	46.680	Takifugu_rubripes
ENSMUSG00000020781	Tsen54	99	44.677	ENSTNIG00000011281	tsen54	99	45.247	Tetraodon_nigroviridis
ENSMUSG00000020781	Tsen54	86	77.948	ENSTTRG00000015828	TSEN54	100	78.384	Tursiops_truncatus
ENSMUSG00000020781	Tsen54	81	75.814	ENSUAMG00000010045	TSEN54	100	75.814	Ursus_americanus
ENSMUSG00000020781	Tsen54	84	75.955	ENSUMAG00000008979	TSEN54	100	76.629	Ursus_maritimus
ENSMUSG00000020781	Tsen54	97	78.947	ENSVVUG00000011411	TSEN54	98	79.417	Vulpes_vulpes
ENSMUSG00000020781	Tsen54	99	49.341	ENSXETG00000012532	tsen54	99	70.833	Xenopus_tropicalis
ENSMUSG00000020781	Tsen54	97	43.222	ENSXCOG00000018245	tsen54	99	43.222	Xiphophorus_couchianus
ENSMUSG00000020781	Tsen54	99	46.067	ENSXMAG00000018818	tsen54	99	46.067	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000213	tRNA-intron endonuclease activity	21873635.	IBA	Function
GO:0000214	tRNA-intron endonuclease complex	21873635.	IBA	Component
GO:0000379	tRNA-type intron splice site recognition and cleavage	21873635.	IBA	Process
GO:0005634	nucleus	-	IEA	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process