EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020783 (Gene tree)
Gene ID: 66874
Gene Symbol: Ncbp3
Alias: 1200014J11Rik
Full Name: nuclear cap binding subunit 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 41535 bases
Position: chr11:73047783-73089317
Accession: 1914124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000021135	NCBP3	PF10309.9	1.8e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000151823	-	3591	-	-	- (aa)	-	-
ENSMUST00000144262	-	2443	-	-	- (aa)	-	-
ENSMUST00000021135	-	12106	-	ENSMUSP00000021135	615 (aa)	-	Q8BZR9

Gene Model

Click here to download ENSMUSG00000020783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020783	Ncbp3	98	94.059	ENSG00000074356	NCBP3	98	93.894	Homo_sapiens
ENSMUSG00000020783	Ncbp3	99	56.897	ENSAPOG00000020809	ncbp3	98	58.214	Acanthochromis_polyacanthus
ENSMUSG00000020783	Ncbp3	98	88.943	ENSAMEG00000009372	NCBP3	98	89.268	Ailuropoda_melanoleuca
ENSMUSG00000020783	Ncbp3	98	54.414	ENSACIG00000024257	ncbp3	98	56.019	Amphilophus_citrinellus
ENSMUSG00000020783	Ncbp3	99	57.524	ENSAPEG00000020857	ncbp3	98	58.162	Amphiprion_percula
ENSMUSG00000020783	Ncbp3	98	56.583	ENSATEG00000010801	ncbp3	98	58.202	Anabas_testudineus
ENSMUSG00000020783	Ncbp3	90	79.510	ENSAPLG00000007373	NCBP3	98	79.354	Anas_platyrhynchos
ENSMUSG00000020783	Ncbp3	99	67.857	ENSANAG00000020550	-	97	67.608	Aotus_nancymaae
ENSMUSG00000020783	Ncbp3	98	87.294	ENSANAG00000024918	-	98	87.829	Aotus_nancymaae
ENSMUSG00000020783	Ncbp3	99	58.805	ENSACLG00000000455	ncbp3	98	57.785	Astatotilapia_calliptera
ENSMUSG00000020783	Ncbp3	98	55.655	ENSAMXG00000005968	ncbp3	98	58.012	Astyanax_mexicanus
ENSMUSG00000020783	Ncbp3	98	92.180	ENSBTAG00000016621	NCBP3	98	92.013	Bos_taurus
ENSMUSG00000020783	Ncbp3	97	91.960	ENSCAFG00000019371	NCBP3	95	91.960	Canis_familiaris
ENSMUSG00000020783	Ncbp3	97	91.960	ENSCAFG00020008143	NCBP3	95	91.960	Canis_lupus_dingo
ENSMUSG00000020783	Ncbp3	100	92.846	ENSCHIG00000009002	NCBP3	98	92.346	Capra_hircus
ENSMUSG00000020783	Ncbp3	98	93.719	ENSTSYG00000008184	NCBP3	98	93.719	Carlito_syrichta
ENSMUSG00000020783	Ncbp3	88	92.518	ENSCAPG00000016045	NCBP3	95	92.518	Cavia_aperea
ENSMUSG00000020783	Ncbp3	98	92.893	ENSCPOG00000015529	NCBP3	98	92.893	Cavia_porcellus
ENSMUSG00000020783	Ncbp3	98	93.399	ENSCCAG00000021154	NCBP3	98	93.234	Cebus_capucinus
ENSMUSG00000020783	Ncbp3	97	93.344	ENSCATG00000013041	NCBP3	95	93.344	Cercocebus_atys
ENSMUSG00000020783	Ncbp3	98	94.176	ENSCLAG00000012229	NCBP3	98	94.176	Chinchilla_lanigera
ENSMUSG00000020783	Ncbp3	98	90.264	ENSCSAG00000013543	NCBP3	98	89.769	Chlorocebus_sabaeus
ENSMUSG00000020783	Ncbp3	98	90.033	ENSCHOG00000012323	NCBP3	98	89.701	Choloepus_hoffmanni
ENSMUSG00000020783	Ncbp3	100	79.126	ENSCPBG00000014824	NCBP3	97	81.101	Chrysemys_picta_bellii
ENSMUSG00000020783	Ncbp3	98	85.455	ENSCANG00000033561	NCBP3	98	85.620	Colobus_angolensis_palliatus
ENSMUSG00000020783	Ncbp3	100	97.565	ENSCGRG00001018538	Ncbp3	100	97.565	Cricetulus_griseus_chok1gshd
ENSMUSG00000020783	Ncbp3	90	97.653	ENSCGRG00000015075	Ncbp3	100	97.653	Cricetulus_griseus_crigri
ENSMUSG00000020783	Ncbp3	99	57.524	ENSCSEG00000006375	ncbp3	98	56.646	Cynoglossus_semilaevis
ENSMUSG00000020783	Ncbp3	99	48.980	ENSCVAG00000020563	ncbp3	98	51.802	Cyprinodon_variegatus
ENSMUSG00000020783	Ncbp3	98	52.518	ENSDARG00000044597	ncbp3	98	54.731	Danio_rerio
ENSMUSG00000020783	Ncbp3	97	92.140	ENSDNOG00000006490	NCBP3	95	92.140	Dasypus_novemcinctus
ENSMUSG00000020783	Ncbp3	100	92.532	ENSDORG00000010141	Ncbp3	98	92.359	Dipodomys_ordii
ENSMUSG00000020783	Ncbp3	97	93.635	ENSEASG00005013399	NCBP3	95	93.635	Equus_asinus_asinus
ENSMUSG00000020783	Ncbp3	97	93.802	ENSECAG00000008444	NCBP3	95	93.802	Equus_caballus
ENSMUSG00000020783	Ncbp3	98	73.833	ENSEEUG00000008573	NCBP3	96	72.572	Erinaceus_europaeus
ENSMUSG00000020783	Ncbp3	100	53.934	ENSELUG00000009182	ncbp3	98	54.651	Esox_lucius
ENSMUSG00000020783	Ncbp3	98	93.344	ENSFCAG00000007929	NCBP3	98	93.344	Felis_catus
ENSMUSG00000020783	Ncbp3	92	81.658	ENSFALG00000006704	NCBP3	98	81.770	Ficedula_albicollis
ENSMUSG00000020783	Ncbp3	98	95.341	ENSFDAG00000013355	NCBP3	98	95.341	Fukomys_damarensis
ENSMUSG00000020783	Ncbp3	98	50.681	ENSFHEG00000005607	ncbp3	98	50.685	Fundulus_heteroclitus
ENSMUSG00000020783	Ncbp3	73	59.344	ENSGMOG00000001007	ncbp3	77	59.211	Gadus_morhua
ENSMUSG00000020783	Ncbp3	100	78.317	ENSGALG00000002653	NCBP3	98	80.165	Gallus_gallus
ENSMUSG00000020783	Ncbp3	83	56.215	ENSGAFG00000008912	ncbp3	81	57.196	Gambusia_affinis
ENSMUSG00000020783	Ncbp3	99	54.560	ENSGACG00000020902	ncbp3	97	53.943	Gasterosteus_aculeatus
ENSMUSG00000020783	Ncbp3	100	79.773	ENSGAGG00000014490	NCBP3	98	79.016	Gopherus_agassizii
ENSMUSG00000020783	Ncbp3	98	94.050	ENSGGOG00000007496	NCBP3	98	93.884	Gorilla_gorilla
ENSMUSG00000020783	Ncbp3	98	94.176	ENSHGLG00000015839	NCBP3	98	94.176	Heterocephalus_glaber_female
ENSMUSG00000020783	Ncbp3	98	94.176	ENSHGLG00100007256	NCBP3	98	94.176	Heterocephalus_glaber_male
ENSMUSG00000020783	Ncbp3	99	52.123	ENSHCOG00000004161	ncbp3	98	53.144	Hippocampus_comes
ENSMUSG00000020783	Ncbp3	98	58.132	ENSIPUG00000024397	ncbp3	98	59.776	Ictalurus_punctatus
ENSMUSG00000020783	Ncbp3	74	96.256	ENSSTOG00000002101	NCBP3	100	96.256	Ictidomys_tridecemlineatus
ENSMUSG00000020783	Ncbp3	98	84.080	ENSJJAG00000000634	Ncbp3	98	83.914	Jaculus_jaculus
ENSMUSG00000020783	Ncbp3	98	53.285	ENSKMAG00000001932	ncbp3	98	53.676	Kryptolebias_marmoratus
ENSMUSG00000020783	Ncbp3	98	51.823	ENSLBEG00000006036	ncbp3	98	52.508	Labrus_bergylta
ENSMUSG00000020783	Ncbp3	98	52.360	ENSLBEG00000001558	-	98	51.679	Labrus_bergylta
ENSMUSG00000020783	Ncbp3	98	62.562	ENSLACG00000018791	NCBP3	98	60.720	Latimeria_chalumnae
ENSMUSG00000020783	Ncbp3	98	61.644	ENSLOCG00000006706	ncbp3	98	62.191	Lepisosteus_oculatus
ENSMUSG00000020783	Ncbp3	98	93.046	ENSLAFG00000002067	NCBP3	98	93.046	Loxodonta_africana
ENSMUSG00000020783	Ncbp3	98	93.864	ENSMFAG00000024176	NCBP3	98	94.362	Macaca_fascicularis
ENSMUSG00000020783	Ncbp3	98	93.864	ENSMMUG00000008556	NCBP3	98	94.362	Macaca_mulatta
ENSMUSG00000020783	Ncbp3	97	93.322	ENSMNEG00000041374	NCBP3	95	93.823	Macaca_nemestrina
ENSMUSG00000020783	Ncbp3	88	94.118	ENSMLEG00000034703	NCBP3	97	94.118	Mandrillus_leucophaeus
ENSMUSG00000020783	Ncbp3	99	53.134	ENSMAMG00000022461	ncbp3	98	53.546	Mastacembelus_armatus
ENSMUSG00000020783	Ncbp3	99	57.480	ENSMZEG00005027802	ncbp3	98	57.074	Maylandia_zebra
ENSMUSG00000020783	Ncbp3	94	79.690	ENSMGAG00000004685	NCBP3	98	81.481	Meleagris_gallopavo
ENSMUSG00000020783	Ncbp3	98	87.934	ENSMICG00000015798	NCBP3	98	87.934	Microcebus_murinus
ENSMUSG00000020783	Ncbp3	100	97.249	ENSMOCG00000016446	Ncbp3	100	97.249	Microtus_ochrogaster
ENSMUSG00000020783	Ncbp3	98	54.905	ENSMMOG00000012577	ncbp3	98	55.292	Mola_mola
ENSMUSG00000020783	Ncbp3	98	53.752	ENSMALG00000009173	ncbp3	98	54.784	Monopterus_albus
ENSMUSG00000020783	Ncbp3	100	99.675	MGP_CAROLIEiJ_G0016684	Ncbp3	100	99.675	Mus_caroli
ENSMUSG00000020783	Ncbp3	100	99.187	MGP_PahariEiJ_G0017817	Ncbp3	100	99.187	Mus_pahari
ENSMUSG00000020783	Ncbp3	100	100.000	MGP_SPRETEiJ_G0017521	Ncbp3	100	100.000	Mus_spretus
ENSMUSG00000020783	Ncbp3	97	92.630	ENSMPUG00000012357	NCBP3	95	92.630	Mustela_putorius_furo
ENSMUSG00000020783	Ncbp3	98	91.181	ENSMLUG00000017060	NCBP3	98	91.181	Myotis_lucifugus
ENSMUSG00000020783	Ncbp3	98	96.007	ENSNGAG00000020321	Ncbp3	98	96.007	Nannospalax_galili
ENSMUSG00000020783	Ncbp3	99	42.357	ENSNBRG00000017354	ncbp3	96	55.882	Neolamprologus_brichardi
ENSMUSG00000020783	Ncbp3	98	88.245	ENSNLEG00000017279	NCBP3	98	88.411	Nomascus_leucogenys
ENSMUSG00000020783	Ncbp3	67	81.967	ENSMEUG00000015701	-	76	81.967	Notamacropus_eugenii
ENSMUSG00000020783	Ncbp3	98	90.682	ENSOPRG00000016925	NCBP3	98	90.183	Ochotona_princeps
ENSMUSG00000020783	Ncbp3	98	95.674	ENSODEG00000016617	NCBP3	98	95.674	Octodon_degus
ENSMUSG00000020783	Ncbp3	99	52.865	ENSONIG00000007434	ncbp3	98	53.947	Oreochromis_niloticus
ENSMUSG00000020783	Ncbp3	100	77.581	ENSOANG00000010109	NCBP3	98	77.558	Ornithorhynchus_anatinus
ENSMUSG00000020783	Ncbp3	97	92.797	ENSOCUG00000008045	NCBP3	95	92.797	Oryctolagus_cuniculus
ENSMUSG00000020783	Ncbp3	98	54.642	ENSORLG00000013703	ncbp3	98	55.199	Oryzias_latipes
ENSMUSG00000020783	Ncbp3	98	54.407	ENSORLG00020011764	ncbp3	98	55.115	Oryzias_latipes_hni
ENSMUSG00000020783	Ncbp3	98	54.325	ENSORLG00015018733	ncbp3	98	54.726	Oryzias_latipes_hsok
ENSMUSG00000020783	Ncbp3	98	54.532	ENSOMEG00000017858	ncbp3	98	56.269	Oryzias_melastigma
ENSMUSG00000020783	Ncbp3	98	92.739	ENSOGAG00000008803	NCBP3	98	92.739	Otolemur_garnettii
ENSMUSG00000020783	Ncbp3	81	92.016	ENSOARG00000017750	NCBP3	97	92.402	Ovis_aries
ENSMUSG00000020783	Ncbp3	98	94.389	ENSPPAG00000030530	NCBP3	98	94.389	Pan_paniscus
ENSMUSG00000020783	Ncbp3	98	92.691	ENSPPRG00000022474	NCBP3	98	92.691	Panthera_pardus
ENSMUSG00000020783	Ncbp3	90	91.486	ENSPTIG00000009607	NCBP3	90	91.486	Panthera_tigris_altaica
ENSMUSG00000020783	Ncbp3	98	94.069	ENSPTRG00000008578	NCBP3	98	94.069	Pan_troglodytes
ENSMUSG00000020783	Ncbp3	98	93.884	ENSPANG00000024364	NCBP3	98	93.884	Papio_anubis
ENSMUSG00000020783	Ncbp3	90	60.212	ENSPKIG00000008466	ncbp3	87	60.636	Paramormyrops_kingsleyae
ENSMUSG00000020783	Ncbp3	81	76.571	ENSPSIG00000013732	NCBP3	96	76.134	Pelodiscus_sinensis
ENSMUSG00000020783	Ncbp3	99	51.128	ENSPMGG00000003344	ncbp3	98	52.160	Periophthalmus_magnuspinnatus
ENSMUSG00000020783	Ncbp3	100	97.240	ENSPEMG00000007746	Ncbp3	100	97.240	Peromyscus_maniculatus_bairdii
ENSMUSG00000020783	Ncbp3	100	78.041	ENSPCIG00000008605	NCBP3	98	78.491	Phascolarctos_cinereus
ENSMUSG00000020783	Ncbp3	88	53.477	ENSPFOG00000000721	ncbp3	96	53.808	Poecilia_formosa
ENSMUSG00000020783	Ncbp3	98	52.932	ENSPLAG00000015399	ncbp3	98	54.423	Poecilia_latipinna
ENSMUSG00000020783	Ncbp3	98	52.703	ENSPMEG00000000896	ncbp3	98	54.042	Poecilia_mexicana
ENSMUSG00000020783	Ncbp3	98	52.711	ENSPREG00000001681	ncbp3	98	54.135	Poecilia_reticulata
ENSMUSG00000020783	Ncbp3	97	93.522	ENSPPYG00000007823	NCBP3	95	93.355	Pongo_abelii
ENSMUSG00000020783	Ncbp3	100	88.293	ENSPCAG00000012614	NCBP3	98	88.519	Procavia_capensis
ENSMUSG00000020783	Ncbp3	98	93.554	ENSPCOG00000016793	NCBP3	98	93.554	Propithecus_coquereli
ENSMUSG00000020783	Ncbp3	96	86.509	ENSPVAG00000012746	NCBP3	98	86.509	Pteropus_vampyrus
ENSMUSG00000020783	Ncbp3	99	53.555	ENSPNYG00000022677	ncbp3	98	53.704	Pundamilia_nyererei
ENSMUSG00000020783	Ncbp3	98	56.112	ENSPNAG00000003219	ncbp3	98	57.522	Pygocentrus_nattereri
ENSMUSG00000020783	Ncbp3	100	97.886	ENSRNOG00000018550	Ncbp3	100	97.886	Rattus_norvegicus
ENSMUSG00000020783	Ncbp3	98	93.719	ENSRBIG00000033247	NCBP3	98	93.719	Rhinopithecus_bieti
ENSMUSG00000020783	Ncbp3	98	93.719	ENSRROG00000043833	NCBP3	99	93.322	Rhinopithecus_roxellana
ENSMUSG00000020783	Ncbp3	98	93.377	ENSSBOG00000023178	NCBP3	98	93.543	Saimiri_boliviensis_boliviensis
ENSMUSG00000020783	Ncbp3	81	76.877	ENSSHAG00000003466	NCBP3	97	76.626	Sarcophilus_harrisii
ENSMUSG00000020783	Ncbp3	100	57.919	ENSSFOG00015005808	ncbp3	98	57.919	Scleropages_formosus
ENSMUSG00000020783	Ncbp3	98	50.505	ENSSMAG00000010917	ncbp3	98	51.227	Scophthalmus_maximus
ENSMUSG00000020783	Ncbp3	99	58.346	ENSSDUG00000023402	ncbp3	98	58.400	Seriola_dumerili
ENSMUSG00000020783	Ncbp3	99	45.551	ENSSLDG00000000742	ncbp3	98	46.412	Seriola_lalandi_dorsalis
ENSMUSG00000020783	Ncbp3	98	83.416	ENSSARG00000006634	NCBP3	98	83.914	Sorex_araneus
ENSMUSG00000020783	Ncbp3	100	75.994	ENSSPUG00000002240	NCBP3	98	74.472	Sphenodon_punctatus
ENSMUSG00000020783	Ncbp3	99	52.758	ENSSPAG00000011223	ncbp3	98	54.454	Stegastes_partitus
ENSMUSG00000020783	Ncbp3	98	93.511	ENSSSCG00000017870	NCBP3	98	93.511	Sus_scrofa
ENSMUSG00000020783	Ncbp3	98	79.901	ENSTGUG00000005396	NCBP3	98	81.157	Taeniopygia_guttata
ENSMUSG00000020783	Ncbp3	99	54.631	ENSTRUG00000003769	ncbp3	98	55.678	Takifugu_rubripes
ENSMUSG00000020783	Ncbp3	99	55.385	ENSTNIG00000004776	ncbp3	98	56.044	Tetraodon_nigroviridis
ENSMUSG00000020783	Ncbp3	98	88.723	ENSTBEG00000006308	NCBP3	98	88.226	Tupaia_belangeri
ENSMUSG00000020783	Ncbp3	98	86.689	ENSTTRG00000005845	NCBP3	98	86.689	Tursiops_truncatus
ENSMUSG00000020783	Ncbp3	98	89.465	ENSUAMG00000014043	NCBP3	98	89.465	Ursus_americanus
ENSMUSG00000020783	Ncbp3	88	91.667	ENSUMAG00000007519	NCBP3	96	92.037	Ursus_maritimus
ENSMUSG00000020783	Ncbp3	97	88.294	ENSVVUG00000026079	NCBP3	95	88.294	Vulpes_vulpes
ENSMUSG00000020783	Ncbp3	100	61.551	ENSXETG00000012965	ncbp3	98	62.460	Xenopus_tropicalis
ENSMUSG00000020783	Ncbp3	99	50.912	ENSXCOG00000018393	ncbp3	99	51.376	Xiphophorus_couchianus
ENSMUSG00000020783	Ncbp3	98	52.102	ENSXMAG00000006849	ncbp3	98	53.073	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000339	RNA cap binding	26382858.	IDA	Function
GO:0000340	RNA 7-methylguanosine cap binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006370	7-methylguanosine mRNA capping	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0051607	defense response to virus	-	ISO	Process