EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020849 (Gene tree)
Gene ID: 22627
Gene Symbol: Ywhae
Alias: 14-3-3 epsilon
Full Name: tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein%2C epsilon polypeptide
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 32977
Position: chr11: 75732869-75765845
Accession: 894689
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131398	-	461	-	ENSMUSP00000123504	154 (aa)	-	F6WA09
ENSMUST00000153038	-	738	-	-	- (aa)	-	-
ENSMUST00000067664	-	2100	-	ENSMUSP00000070993	255 (aa)	-	P62259
ENSMUST00000134745	-	599	-	ENSMUSP00000117877	130 (aa)	-	D6REF3
ENSMUST00000155057	-	815	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020849's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG
mmu04114	Oocyte meiosis	KEGG
mmu04151	PI3K-Akt signaling pathway	KEGG
mmu04390	Hippo signaling pathway	KEGG
mmu04722	Neurotrophin signaling pathway	KEGG
mmu05160	Hepatitis C	KEGG
mmu05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020849's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020849	Ywhae	100	100.000	ENSG00000108953	YWHAE	100	100.000	Homo_sapiens
ENSMUSG00000020849	Ywhae	95	63.968	ENSG00000170027	YWHAG	100	63.968	Homo_sapiens
ENSMUSG00000020849	Ywhae	94	63.265	ENSG00000128245	YWHAH	99	63.265	Homo_sapiens
ENSMUSG00000020849	Ywhae	95	63.968	ENSMUSG00000051391	Ywhag	100	63.968	Mus_musculus
ENSMUSG00000020849	Ywhae	94	63.265	ENSMUSG00000018965	Ywhah	99	63.265	Mus_musculus
ENSMUSG00000020849	Ywhae	93	77.406	YDR099W	BMH2	93	73.913	Saccharomyces_cerevisiae
ENSMUSG00000020849	Ywhae	94	76.349	YER177W	BMH1	92	75.203	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000165	MAPK cascade	-	ISO	Process
GO:0001764	neuron migration	12796778.	IGI	Process
GO:0001764	neuron migration	12796778.	IMP	Process
GO:0005246	calcium channel regulator activity	-	ISO	Function
GO:0005515	protein binding	11585834.12796778.15166223.15284227.15722337.16482218.16615898.16956611.18331715.20410134.21242966.21346153.21390248.23055941.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	23326474.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005871	kinesin complex	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006605	protein targeting	12446771.	IDA	Process
GO:0015459	potassium channel regulator activity	-	ISO	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0019903	protein phosphatase binding	23326474.	IPI	Function
GO:0019904	protein domain specific binding	12446771.	IDA	Function
GO:0021766	hippocampus development	12796778.	IMP	Process
GO:0021987	cerebral cortex development	12796778.	IMP	Process
GO:0030424	axon	-	ISO	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0034504	protein localization to nucleus	-	ISO	Process
GO:0034605	cellular response to heat	-	ISO	Process
GO:0035308	negative regulation of protein dephosphorylation	12796778.	IDA	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0044325	ion channel binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045202	synapse	-	ISO	Component
GO:0046827	positive regulation of protein export from nucleus	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0050815	phosphoserine residue binding	-	ISO	Function
GO:0051219	phosphoprotein binding	-	ISO	Function
GO:0051480	regulation of cytosolic calcium ion concentration	-	ISO	Process
GO:0060306	regulation of membrane repolarization	-	ISO	Process
GO:0090724	central region of growth cone	-	ISO	Component
GO:0097110	scaffold protein binding	-	ISO	Function
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099072	regulation of postsynaptic membrane neurotransmitter receptor levels	-	ISO	Process
GO:1901016	regulation of potassium ion transmembrane transporter activity	-	ISO	Process
GO:1901020	negative regulation of calcium ion transmembrane transporter activity	-	ISO	Process
GO:1902309	negative regulation of peptidyl-serine dephosphorylation	-	ISO	Process
GO:1905913	negative regulation of calcium ion export across plasma membrane	-	ISO	Process