EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000153076	-	5954	-	ENSMUSP00000117502	901 (aa)	-	Z4YMB8
ENSMUST00000024979	-	6756	-	ENSMUSP00000024979	1169 (aa)	-	F8WH31
ENSMUST00000132772	-	611	-	-	- (aa)	-	-
ENSMUST00000041956	-	7340	XM_006534210	ENSMUSP00000042271	1307 (aa)	XP_006534273	Q58A65
ENSMUST00000156019	-	2324	-	ENSMUSP00000115864	775 (aa)	-	F6SH61
ENSMUST00000103168	-	6840	XM_006534219	ENSMUSP00000099457	1164 (aa)	XP_006534282	A0A0R4J196
ENSMUST00000132079	-	2365	-	ENSMUSP00000118850	706 (aa)	-	F6WNT4
ENSMUST00000075695	-	6910	XM_006534216	ENSMUSP00000075115	1168 (aa)	XP_006534279	Q58A65
ENSMUST00000092777	-	6913	-	ENSMUSP00000090452	1169 (aa)	-	E9PUD1
ENSMUST00000127066	-	803	-	-	- (aa)	-	-
ENSMUST00000138154	-	2167	-	-	- (aa)	-	-
ENSMUST00000132605	-	3000	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020859	Spag9	100	96.670	ENSG00000008294	SPAG9	100	96.634	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000187	activation of MAPK activity	15767678.	IDA	Process
GO:0005078	MAP-kinase scaffold activity	21873635.	IBA	Function
GO:0005515	protein binding	12391307.19056739.20173330.20493856.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	15767678.	IDA	Component
GO:0005815	microtubule organizing center	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007257	activation of JUN kinase activity	21873635.	IBA	Process
GO:0007257	activation of JUN kinase activity	12391307.	IDA	Process
GO:0008432	JUN kinase binding	21873635.	IBA	Function
GO:0008432	JUN kinase binding	12391307.15767678.	IDA	Function
GO:0016192	vesicle-mediated transport	21873635.	IBA	Process
GO:0019894	kinesin binding	21873635.	IBA	Function
GO:0019894	kinesin binding	15767678.	IDA	Function
GO:0030159	receptor signaling complex scaffold activity	21873635.	IBA	Function
GO:0030335	positive regulation of cell migration	-	ISO	Process
GO:0042147	retrograde transport, endosome to Golgi	-	ISO	Process
GO:0043410	positive regulation of MAPK cascade	20004020.	IGI	Process
GO:0045666	positive regulation of neuron differentiation	19244314.	IMP	Process
GO:0048273	mitogen-activated protein kinase p38 binding	12391307.	IDA	Function
GO:0048471	perinuclear region of cytoplasm	19056739.	IDA	Component
GO:0051146	striated muscle cell differentiation	20160094.	IGI	Process
GO:0051260	protein homooligomerization	15767678.	IDA	Process
GO:0090074	negative regulation of protein homodimerization activity	12391307.	IDA	Process