EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000152969	-	772	-	-	- (aa)	-	-
ENSMUST00000107385	-	1741	-	ENSMUSP00000103008	491 (aa)	-	Q3TS02
ENSMUST00000007131	-	4393	-	ENSMUSP00000007131	1091 (aa)	-	Q91V92
ENSMUST00000107389	-	4426	-	ENSMUSP00000103012	1101 (aa)	-	Q3V117
ENSMUST00000165111	-	4162	-	ENSMUSP00000127632	1091 (aa)	-	Q91V92
ENSMUST00000154888	-	584	-	-	- (aa)	-	-
ENSMUST00000154151	-	601	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020917	Acly	99	59.874	WBGene00016995	acly-1	99	59.874	Caenorhabditis_elegans
ENSMUSG00000020917	Acly	99	70.320	FBgn0020236	ATPCL	99	70.320	Drosophila_melanogaster
ENSMUSG00000020917	Acly	100	98.093	ENSG00000131473	ACLY	100	99.248	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003878	ATP citrate synthase activity	21873635.	IBA	Function
GO:0003878	ATP citrate synthase activity	-	ISO	Function
GO:0005515	protein binding	15102471.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006084	acetyl-CoA metabolic process	-	ISO	Process
GO:0006085	acetyl-CoA biosynthetic process	21873635.	IBA	Process
GO:0006085	acetyl-CoA biosynthetic process	-	ISO	Process
GO:0006101	citrate metabolic process	-	ISO	Process
GO:0006107	oxaloacetate metabolic process	-	ISO	Process
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006633	fatty acid biosynthetic process	21873635.	IBA	Process
GO:0006633	fatty acid biosynthetic process	-	ISO	Process
GO:0008610	lipid biosynthetic process	-	ISO	Process
GO:0009346	citrate lyase complex	21873635.	IBA	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	-	IEA	Function
GO:0048037	cofactor binding	-	IEA	Function