EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020923 (Gene tree)
Gene ID: 21429
Gene Symbol: Ubtf
Alias: A930005G04Rik|Tcfubf|UBF|UBF1
Full Name: upstream binding transcription factor%2C RNA polymerase I
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 15183
Position: chr11: 102304560-102319742
Accession: 98512
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000107117	-	3258	XM_011248891	ENSMUSP00000102734	727 (aa)	XP_011247193	A2AWT6
ENSMUST00000107115	-	3199	XM_017314430	ENSMUSP00000102732	727 (aa)	XP_017169919	A2AWT6
ENSMUST00000146896	-	723	-	ENSMUSP00000134665	151 (aa)	-	G3UZW9
ENSMUST00000174726	-	480	-	-	- (aa)	-	-
ENSMUST00000006754	-	3213	XM_011248892	ENSMUSP00000006754	752 (aa)	XP_011247194	A2AWT7
ENSMUST00000107119	-	3013	-	ENSMUSP00000102736	727 (aa)	-	A2AWT6
ENSMUST00000174400	-	668	-	-	- (aa)	-	-
ENSMUST00000173870	-	2936	XM_011248889	ENSMUSP00000133611	764 (aa)	XP_011247191	A2AWT5
ENSMUST00000178839	-	4580	XM_017314429	ENSMUSP00000136310	727 (aa)	XP_017169918	A2AWT6
ENSMUST00000174302	-	4692	XM_017314425	ENSMUSP00000133844	764 (aa)	XP_017169914	A2AWT5
ENSMUST00000107123	-	2759	XM_011248888	ENSMUSP00000102740	764 (aa)	XP_011247190	A2AWT5
ENSMUST00000128016	-	1062	-	ENSMUSP00000131930	169 (aa)	-	E9Q4A8
ENSMUST00000079589	-	3286	XM_017314428	ENSMUSP00000078539	764 (aa)	XP_017169917	A2AWT5

Gene Model

Click here to download ENSMUSG00000020923's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020923's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020923	Ubtf	99	100.000	ENSG00000108312	UBTF	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000183	chromatin silencing at rDNA	19103806.	IMP	Process
GO:0001164	RNA polymerase I CORE element sequence-specific DNA binding	-	ISO	Function
GO:0001165	RNA polymerase I upstream control element sequence-specific DNA binding	-	ISO	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0005515	protein binding	11592397.17251981.19796622.20168301.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	11555636.12878164.14729462.15989966.16129783.19103806.20168299.20168301.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006360	transcription by RNA polymerase I	-	ISO	Process
GO:0006362	transcription elongation from RNA polymerase I promoter	23562818.	IDA	Process
GO:0045943	positive regulation of transcription by RNA polymerase I	20168301.	IDA	Process
GO:0097110	scaffold protein binding	-	ISO	Function
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process