EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000020929 (Gene tree)
Gene ID
20624
Gene Symbol
Eftud2
Alias
116kDa|Snrp116|U5-116kD
Full Name
elongation factor Tu GTP binding domain containing 2
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
42513 bases
Position
chr11:102838473-102880985
Accession
1336880
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000102675GTP_EFTUPF00009.277.6e-4511
ENSMUSP00000021306GTP_EFTUPF00009.277.6e-4511
ENSMUSP00000134327GTP_EFTUPF00009.272.8e-3711
ENSMUSP00000134327GTP_EFTU_D2PF03144.252.2e-1211
ENSMUSP00000021306GTP_EFTU_D2PF03144.252.2e-1211
ENSMUSP00000102675GTP_EFTU_D2PF03144.252.4e-1211
ENSMUSP00000134327EFG_IVPF03764.185.3e-2311
ENSMUSP00000102675EFG_IVPF03764.185.4e-2311
ENSMUSP00000021306EFG_IVPF03764.185.4e-2311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000138483-679-ENSMUSP0000013472530 (aa)-G3V021
ENSMUST00000173974-1326--- (aa)--
ENSMUST00000107060-3339XM_006532665ENSMUSP00000102675971 (aa)XP_006532728O08810
ENSMUST00000173679-2889-ENSMUSP00000134327962 (aa)-G3UZ34
ENSMUST00000131678-629--- (aa)--
ENSMUST00000147368-581--- (aa)--
ENSMUST00000141273-934--- (aa)--
ENSMUST00000021306-3324-ENSMUSP00000021306972 (aa)-A2AH85
ENSMUST00000143323-631--- (aa)--
ENSMUST00000123833-3288--- (aa)--
ENSMUST00000148209-796--- (aa)--
ENSMUST00000132543-567-ENSMUSP0000013373285 (aa)-G3UXK8
ENSMUST00000172611-397-ENSMUSP0000013431698 (aa)-G3UZ25
Gene Model
Click here to download ENSMUSG00000020929's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020929's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000020929Eftud27333.803ENSMUSG00000038563Efl18035.294
ENSMUSG00000020929Eftud28948.052ENSMUSG00000034994Eef29939.175
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000020929Eftud210099.383ENSG00000108883EFTUD2100100.000Homo_sapiens
ENSMUSG00000020929Eftud210092.078ENSAPOG00000002433eftud210091.975Acanthochromis_polyacanthus
ENSMUSG00000020929Eftud210099.280ENSAMEG00000018390EFTUD210099.280Ailuropoda_melanoleuca
ENSMUSG00000020929Eftud210088.580ENSACIG00000009096eftud210088.568Amphilophus_citrinellus
ENSMUSG00000020929Eftud28888.235ENSAOCG00000023385eftud210088.235Amphiprion_ocellaris
ENSMUSG00000020929Eftud210092.181ENSAPEG00000003321eftud210092.078Amphiprion_percula
ENSMUSG00000020929Eftud210092.585ENSATEG00000000457eftud210092.585Anabas_testudineus
ENSMUSG00000020929Eftud29993.821ENSAPLG00000011036EFTUD29993.821Anas_platyrhynchos
ENSMUSG00000020929Eftud210097.119ENSACAG00000007637EFTUD210097.119Anolis_carolinensis
ENSMUSG00000020929Eftud210099.280ENSANAG00000025320EFTUD210099.280Aotus_nancymaae
ENSMUSG00000020929Eftud210092.173ENSACLG00000001296eftud210092.173Astatotilapia_calliptera
ENSMUSG00000020929Eftud210091.812ENSAMXG00000000568eftud210091.812Astyanax_mexicanus
ENSMUSG00000020929Eftud210099.383ENSBTAG00000013526EFTUD210099.383Bos_taurus
ENSMUSG00000020929Eftud29970.248WBGene00001166eftu-29969.835Caenorhabditis_elegans
ENSMUSG00000020929Eftud210099.280ENSCJAG00000012349EFTUD210099.280Callithrix_jacchus
ENSMUSG00000020929Eftud210099.280ENSCAFG00000014065EFTUD210099.280Canis_familiaris
ENSMUSG00000020929Eftud210099.280ENSCAFG00020009633EFTUD210099.280Canis_lupus_dingo
ENSMUSG00000020929Eftud210099.383ENSCHIG00000011603EFTUD210099.383Capra_hircus
ENSMUSG00000020929Eftud210099.074ENSTSYG00000013172EFTUD210099.074Carlito_syrichta
ENSMUSG00000020929Eftud210098.868ENSCAPG00000014639EFTUD210098.868Cavia_aperea
ENSMUSG00000020929Eftud210098.868ENSCPOG00000010566EFTUD210098.868Cavia_porcellus
ENSMUSG00000020929Eftud210099.280ENSCCAG00000035302EFTUD210099.280Cebus_capucinus
ENSMUSG00000020929Eftud210099.280ENSCATG00000035809EFTUD210099.280Cercocebus_atys
ENSMUSG00000020929Eftud210098.765ENSCLAG00000014733EFTUD210098.765Chinchilla_lanigera
ENSMUSG00000020929Eftud210099.280ENSCSAG00000003614EFTUD210099.280Chlorocebus_sabaeus
ENSMUSG00000020929Eftud29186.712ENSCHOG00000010031EFTUD29986.712Choloepus_hoffmanni
ENSMUSG00000020929Eftud210097.942ENSCPBG00000008904EFTUD210097.942Chrysemys_picta_bellii
ENSMUSG00000020929Eftud210077.949ENSCING00000009372-10077.949Ciona_intestinalis
ENSMUSG00000020929Eftud29978.287ENSCSAVG00000004985-9979.717Ciona_savignyi
ENSMUSG00000020929Eftud210099.280ENSCANG00000026557EFTUD210099.280Colobus_angolensis_palliatus
ENSMUSG00000020929Eftud210099.794ENSCGRG00001009904Eftud210099.794Cricetulus_griseus_chok1gshd
ENSMUSG00000020929Eftud210099.794ENSCGRG00000003825Eftud210099.794Cricetulus_griseus_crigri
ENSMUSG00000020929Eftud210091.761ENSCSEG00000016775eftud210091.761Cynoglossus_semilaevis
ENSMUSG00000020929Eftud210092.078ENSCVAG00000012537eftud210092.284Cyprinodon_variegatus
ENSMUSG00000020929Eftud210091.161ENSDARG00000012261eftud210091.246Danio_rerio
ENSMUSG00000020929Eftud210098.663ENSDNOG00000008033EFTUD210098.663Dasypus_novemcinctus
ENSMUSG00000020929Eftud210099.280ENSDORG00000011566Eftud210099.280Dipodomys_ordii
ENSMUSG00000020929Eftud210075.385FBgn0039566CG484910074.872Drosophila_melanogaster
ENSMUSG00000020929Eftud29299.457ENSETEG00000005678EFTUD29299.457Echinops_telfairi
ENSMUSG00000020929Eftud29477.778ENSEBUG00000004047-9686.926Eptatretus_burgeri
ENSMUSG00000020929Eftud210099.280ENSEASG00005010321EFTUD210099.280Equus_asinus_asinus
ENSMUSG00000020929Eftud210099.177ENSECAG00000019363EFTUD29399.177Equus_caballus
ENSMUSG00000020929Eftud283100.000ENSEEUG00000011128EFTUD292100.000Erinaceus_europaeus
ENSMUSG00000020929Eftud210090.834ENSELUG00000017169eftud210091.143Esox_lucius
ENSMUSG00000020929Eftud210099.177ENSFCAG00000005466EFTUD210099.177Felis_catus
ENSMUSG00000020929Eftud210097.531ENSFALG00000007551EFTUD210097.531Ficedula_albicollis
ENSMUSG00000020929Eftud210099.486ENSFDAG00000013143EFTUD210099.486Fukomys_damarensis
ENSMUSG00000020929Eftud210092.181ENSFHEG00000013479eftud210092.387Fundulus_heteroclitus
ENSMUSG00000020929Eftud210091.452ENSGMOG00000014277eftud210091.667Gadus_morhua
ENSMUSG00000020929Eftud210097.428ENSGALG00000000988EFTUD210098.276Gallus_gallus
ENSMUSG00000020929Eftud210091.975ENSGAFG00000002263eftud210092.181Gambusia_affinis
ENSMUSG00000020929Eftud210091.658ENSGACG00000009163eftud210091.658Gasterosteus_aculeatus
ENSMUSG00000020929Eftud210099.280ENSGGOG00000012999EFTUD210099.280Gorilla_gorilla
ENSMUSG00000020929Eftud210092.070ENSHBUG00000023546eftud210092.070Haplochromis_burtoni
ENSMUSG00000020929Eftud210099.074ENSHGLG00000014497EFTUD210099.074Heterocephalus_glaber_female
ENSMUSG00000020929Eftud210099.074ENSHGLG00100013432EFTUD210099.074Heterocephalus_glaber_male
ENSMUSG00000020929Eftud210090.844ENSHCOG00000017689eftud210091.049Hippocampus_comes
ENSMUSG00000020929Eftud210091.667ENSIPUG00000023182Eftud210091.872Ictalurus_punctatus
ENSMUSG00000020929Eftud210093.519ENSSTOG00000012188EFTUD210093.512Ictidomys_tridecemlineatus
ENSMUSG00000020929Eftud29699.573ENSJJAG00000018268Eftud210099.573Jaculus_jaculus
ENSMUSG00000020929Eftud210091.564ENSKMAG00000021027eftud210091.667Kryptolebias_marmoratus
ENSMUSG00000020929Eftud29591.253ENSLBEG00000005875eftud210092.588Labrus_bergylta
ENSMUSG00000020929Eftud210094.027ENSLACG00000012918EFTUD210094.245Latimeria_chalumnae
ENSMUSG00000020929Eftud210092.585ENSLOCG00000011460eftud210092.276Lepisosteus_oculatus
ENSMUSG00000020929Eftud210099.177ENSLAFG00000015344EFTUD29999.177Loxodonta_africana
ENSMUSG00000020929Eftud210099.280ENSMFAG00000042655EFTUD210099.280Macaca_fascicularis
ENSMUSG00000020929Eftud210099.280ENSMMUG00000013118EFTUD2100100.000Macaca_mulatta
ENSMUSG00000020929Eftud210099.280ENSMNEG00000037895EFTUD210099.280Macaca_nemestrina
ENSMUSG00000020929Eftud210099.280ENSMLEG00000032960EFTUD210099.280Mandrillus_leucophaeus
ENSMUSG00000020929Eftud210092.490ENSMAMG00000022190eftud210092.387Mastacembelus_armatus
ENSMUSG00000020929Eftud210092.173ENSMZEG00005022885eftud210092.173Maylandia_zebra
ENSMUSG00000020929Eftud210097.433ENSMGAG00000010083EFTUD29997.433Meleagris_gallopavo
ENSMUSG00000020929Eftud210099.588ENSMAUG00000021178Eftud210099.588Mesocricetus_auratus
ENSMUSG00000020929Eftud210099.280ENSMICG00000016592EFTUD210099.280Microcebus_murinus
ENSMUSG00000020929Eftud210099.691ENSMOCG00000009039-10099.691Microtus_ochrogaster
ENSMUSG00000020929Eftud29281.798ENSMOCG00000017653-9082.159Microtus_ochrogaster
ENSMUSG00000020929Eftud28894.000ENSMMOG00000020811eftud210094.000Mola_mola
ENSMUSG00000020929Eftud210098.971ENSMODG00000011347EFTUD210098.971Monodelphis_domestica
ENSMUSG00000020929Eftud28892.235ENSMALG00000014501eftud210092.235Monopterus_albus
ENSMUSG00000020929Eftud2100100.000MGP_CAROLIEiJ_G0017263Eftud2100100.000Mus_caroli
ENSMUSG00000020929Eftud2100100.000MGP_PahariEiJ_G0018393Eftud2100100.000Mus_pahari
ENSMUSG00000020929Eftud2100100.000MGP_SPRETEiJ_G0018106Eftud2100100.000Mus_spretus
ENSMUSG00000020929Eftud29799.258ENSMPUG00000009136EFTUD29099.258Mustela_putorius_furo
ENSMUSG00000020929Eftud210099.280ENSMLUG00000012164EFTUD29999.280Myotis_lucifugus
ENSMUSG00000020929Eftud210099.588ENSNGAG00000017834Eftud210099.588Nannospalax_galili
ENSMUSG00000020929Eftud210092.070ENSNBRG00000020081eftud210092.070Neolamprologus_brichardi
ENSMUSG00000020929Eftud29797.450ENSNLEG00000005210EFTUD29697.450Nomascus_leucogenys
ENSMUSG00000020929Eftud210095.267ENSMEUG00000015620EFTUD210095.267Notamacropus_eugenii
ENSMUSG00000020929Eftud210091.049ENSOPRG00000016323EFTUD210091.049Ochotona_princeps
ENSMUSG00000020929Eftud210098.765ENSODEG00000018041-10098.765Octodon_degus
ENSMUSG00000020929Eftud29379.598ENSODEG00000003385-10079.598Octodon_degus
ENSMUSG00000020929Eftud210092.173ENSONIG00000000912eftud210092.173Oreochromis_niloticus
ENSMUSG00000020929Eftud210099.486ENSOCUG00000006879EFTUD210099.486Oryctolagus_cuniculus
ENSMUSG00000020929Eftud210092.070ENSORLG00000003109eftud210092.070Oryzias_latipes
ENSMUSG00000020929Eftud210091.967ENSORLG00020009865eftud210091.967Oryzias_latipes_hni
ENSMUSG00000020929Eftud210091.967ENSORLG00015002611eftud210093.682Oryzias_latipes_hsok
ENSMUSG00000020929Eftud26770.690ENSOMEG00000021902-8096.748Oryzias_melastigma
ENSMUSG00000020929Eftud210097.016ENSOGAG00000012918EFTUD210097.016Otolemur_garnettii
ENSMUSG00000020929Eftud210099.383ENSOARG00000009078EFTUD29799.383Ovis_aries
ENSMUSG00000020929Eftud210099.383ENSPPAG00000029450EFTUD210099.383Pan_paniscus
ENSMUSG00000020929Eftud210099.280ENSPPRG00000010981EFTUD210099.280Panthera_pardus
ENSMUSG00000020929Eftud210099.280ENSPTIG00000007703EFTUD210099.280Panthera_tigris_altaica
ENSMUSG00000020929Eftud210099.383ENSPTRG00000009287EFTUD210099.383Pan_troglodytes
ENSMUSG00000020929Eftud210099.280ENSPANG00000021284EFTUD210099.280Papio_anubis
ENSMUSG00000020929Eftud29396.582ENSPSIG00000004505EFTUD29996.582Pelodiscus_sinensis
ENSMUSG00000020929Eftud210084.449ENSPMGG00000007281eftud210084.465Periophthalmus_magnuspinnatus
ENSMUSG00000020929Eftud210099.794ENSPEMG00000005129Eftud210099.794Peromyscus_maniculatus_bairdii
ENSMUSG00000020929Eftud210098.971ENSPCIG00000015027EFTUD210098.971Phascolarctos_cinereus
ENSMUSG00000020929Eftud210091.975ENSPFOG00000008515eftud210092.181Poecilia_formosa
ENSMUSG00000020929Eftud210091.975ENSPLAG00000010393eftud210092.181Poecilia_latipinna
ENSMUSG00000020929Eftud210091.975ENSPMEG00000005087eftud210092.181Poecilia_mexicana
ENSMUSG00000020929Eftud26770.690ENSPREG00000008431-8491.824Poecilia_reticulata
ENSMUSG00000020929Eftud210097.840ENSPPYG00000008320EFTUD210097.840Pongo_abelii
ENSMUSG00000020929Eftud210094.959ENSPCAG00000000812EFTUD210095.062Procavia_capensis
ENSMUSG00000020929Eftud210099.177ENSPCOG00000020029EFTUD210099.177Propithecus_coquereli
ENSMUSG00000020929Eftud210094.547ENSPVAG00000016155EFTUD210094.547Pteropus_vampyrus
ENSMUSG00000020929Eftud210092.070ENSPNYG00000012448eftud210092.070Pundamilia_nyererei
ENSMUSG00000020929Eftud210092.078ENSPNAG00000012490eftud210092.181Pygocentrus_nattereri
ENSMUSG00000020929Eftud210099.897ENSRNOG00000002818Eftud210099.897Rattus_norvegicus
ENSMUSG00000020929Eftud210099.177ENSRBIG00000043255EFTUD210099.177Rhinopithecus_bieti
ENSMUSG00000020929Eftud210099.177ENSRROG00000042925EFTUD210099.177Rhinopithecus_roxellana
ENSMUSG00000020929Eftud29733.962YKL173WSNU1149733.664Saccharomyces_cerevisiae
ENSMUSG00000020929Eftud210099.280ENSSBOG00000021892EFTUD210099.280Saimiri_boliviensis_boliviensis
ENSMUSG00000020929Eftud29798.934ENSSHAG00000008134EFTUD210098.934Sarcophilus_harrisii
ENSMUSG00000020929Eftud210092.070ENSSFOG00015023272eftud210091.761Scleropages_formosus
ENSMUSG00000020929Eftud210091.555ENSSMAG00000010174eftud210091.555Scophthalmus_maximus
ENSMUSG00000020929Eftud210092.181ENSSDUG00000022675eftud210092.078Seriola_dumerili
ENSMUSG00000020929Eftud210092.284ENSSLDG00000001595eftud210092.181Seriola_lalandi_dorsalis
ENSMUSG00000020929Eftud210090.844ENSSARG00000008664EFTUD210090.844Sorex_araneus
ENSMUSG00000020929Eftud210097.016ENSSPUG00000010249EFTUD210097.016Sphenodon_punctatus
ENSMUSG00000020929Eftud210092.284ENSSPAG00000016235eftud29992.181Stegastes_partitus
ENSMUSG00000020929Eftud210099.074ENSSSCG00000017346EFTUD210099.074Sus_scrofa
ENSMUSG00000020929Eftud28497.073ENSTGUG00000002065EFTUD210096.837Taeniopygia_guttata
ENSMUSG00000020929Eftud210091.143ENSTRUG00000016422eftud210091.143Takifugu_rubripes
ENSMUSG00000020929Eftud210086.997ENSTNIG00000005346eftud29986.894Tetraodon_nigroviridis
ENSMUSG00000020929Eftud210093.621ENSTBEG00000011337EFTUD210093.621Tupaia_belangeri
ENSMUSG00000020929Eftud294100.000ENSTTRG00000006230EFTUD210090.844Tursiops_truncatus
ENSMUSG00000020929Eftud210098.152ENSUAMG00000000399EFTUD210098.152Ursus_americanus
ENSMUSG00000020929Eftud210099.280ENSUMAG00000014323EFTUD210099.280Ursus_maritimus
ENSMUSG00000020929Eftud288100.000ENSVPAG00000002748EFTUD288100.000Vicugna_pacos
ENSMUSG00000020929Eftud210099.280ENSVVUG00000018113EFTUD210099.280Vulpes_vulpes
ENSMUSG00000020929Eftud29694.877ENSXETG00000003394eftud29895.756Xenopus_tropicalis
ENSMUSG00000020929Eftud28193.367ENSXCOG00000017309eftud29693.367Xiphophorus_couchianus
ENSMUSG00000020929Eftud210091.975ENSXMAG00000008494eftud210092.181Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003924GTPase activity21873635.IBAFunction
GO:0005515protein binding11739632.IPIFunction
GO:0005525GTP binding-IEAFunction
GO:0005634nucleus11739632.IDAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0015030Cajal body-ISOComponent
GO:0016607nuclear speck-ISOComponent
GO:0030623U5 snRNA binding21873635.IBAFunction
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome21873635.IBAComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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