EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020952 (Gene tree)
Gene ID: 76983
Gene Symbol: Scfd1
Alias: 3110021P21Rik|RA410|STXBP1L2
Full Name: Sec1 family domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 72592
Position: chr12: 51377510-51450101
Accession: 1924233
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219434	-	2749	-	ENSMUSP00000151347	390 (aa)	-	Q8BRF7
ENSMUST00000021335	-	2096	-	ENSMUSP00000021335	639 (aa)	-	Q8BRF7
ENSMUST00000219686	-	707	-	-	- (aa)	-	-
ENSMUST00000218131	-	6842	-	-	- (aa)	-	-
ENSMUST00000219264	-	3108	-	-	- (aa)	-	-
ENSMUST00000218138	-	1017	-	ENSMUSP00000151379	159 (aa)	-	A0A1W2P6R7
ENSMUST00000219799	-	2534	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020952's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005737	cytoplasm	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005798	Golgi-associated vesicle	-	ISO	Component
GO:0005801	cis-Golgi network	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	-	ISO	Process
GO:0006892	post-Golgi vesicle-mediated transport	-	ISO	Process
GO:0006904	vesicle docking involved in exocytosis	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0019905	syntaxin binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0051223	regulation of protein transport	-	ISO	Process
GO:0060628	regulation of ER to Golgi vesicle-mediated transport	-	ISO	Process
GO:1901998	toxin transport	23716698.	IMP	Process
GO:1902902	negative regulation of autophagosome assembly	-	ISO	Process