EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000020982 (Gene tree)
Gene ID: 66244
Gene Symbol: Nemf
Alias: 1500011I12Rik|4933405E14Rik|Sdccag1
Full Name: nuclear export mediator factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 46644
Position: chr12: 69310522-69357165
Accession: 1918305
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000220484	-	882	-	ENSMUSP00000152242	122 (aa)	-	A0A1Y7VJ12
ENSMUST00000221193	-	3909	-	-	- (aa)	-	-
ENSMUST00000221794	-	2843	-	-	- (aa)	-	-
ENSMUST00000221112	-	497	-	-	- (aa)	-	-
ENSMUST00000222674	-	534	-	-	- (aa)	-	-
ENSMUST00000222763	-	1340	-	-	- (aa)	-	-
ENSMUST00000220674	-	2370	-	-	- (aa)	-	-
ENSMUST00000221722	-	2385	-	-	- (aa)	-	-
ENSMUST00000220959	-	640	-	-	- (aa)	-	-
ENSMUST00000021368	-	4732	XM_011244157	ENSMUSP00000021368	1064 (aa)	XP_011242459	Q8CCP0
ENSMUST00000222065	-	473	-	ENSMUSP00000152476	149 (aa)	-	A0A1Y7VM23
ENSMUST00000221278	-	660	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000020982's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000020982's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000020982	Nemf	98	62.810	FBgn0259152	Clbn	68	51.195	Drosophila_melanogaster
ENSMUSG00000020982	Nemf	99	99.174	ENSG00000165525	NEMF	100	99.174	Homo_sapiens
ENSMUSG00000020982	Nemf	96	38.655	YPL009C		68	30.082	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0043023	ribosomal large subunit binding	21873635.	IBA	Function
GO:0051168	nuclear export	-	ISO	Process
GO:0072344	rescue of stalled ribosome	21873635.	IBA	Process
GO:1990112	RQC complex	21873635.	IBA	Component
GO:1990116	ribosome-associated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process