EuRBPDB

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  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000021039 (Gene tree)
Gene ID
66354
Gene Symbol
Snw1
Alias
2310008B08Rik|NCoA-62|SKIP|SNW1|Skiip
Full Name
SNW domain containing 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Minus strand
Length
23200
Position
chr12: 87449075-87472274
Accession
1913604
RBP type
non-canonical RBP
Summary
-
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000021428-2232-ENSMUSP00000021428536 (aa)-A0A0B4J1E2
ENSMUST00000222579-5083--- (aa)--
ENSMUST00000223119-479--- (aa)--
Gene Model
Click here to download ENSMUSG00000021039's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu04330Notch signaling pathwayKEGG
mmu05169Epstein-Barr virus infectionKEGG
mmu05203Viral carcinogenesisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021039's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000021039Snw19556.814WBGene00004806skp-19656.814Caenorhabditis_elegans
ENSMUSG00000021039Snw110099.254ENSG00000100603SNW110099.733Homo_sapiens
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000785chromatin-ISOComponent
GO:0003713transcription coactivator activity-ISOFunction
GO:0003714transcription corepressor activity-ISOFunction
GO:0005112Notch binding-ISOFunction
GO:0005515protein binding15878163.17592128.IPIFunction
GO:0005634nucleus15878163.ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008024cyclin/CDK positive transcription elongation factor complex-ISOComponent
GO:0008380RNA splicing-IEAProcess
GO:0016363nuclear matrix-ISOComponent
GO:0016604nuclear body-ISOComponent
GO:0016607nuclear speck-ISOComponent
GO:0019899enzyme binding-ISOFunction
GO:0030511positive regulation of transforming growth factor beta receptor signaling pathway-ISOProcess
GO:0035257nuclear hormone receptor binding-ISOFunction
GO:0035914skeletal muscle cell differentiation22147266.IMPProcess
GO:0042771intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator-ISOProcess
GO:0042809vitamin D receptor binding-ISOFunction
GO:0042974retinoic acid receptor binding-ISOFunction
GO:0043923positive regulation by host of viral transcription-ISOProcess
GO:0045892negative regulation of transcription, DNA-templated15878163.ISOProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0046332SMAD binding-ISOFunction
GO:0048026positive regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0048384retinoic acid receptor signaling pathway-ISOProcess
GO:0048385regulation of retinoic acid receptor signaling pathway-ISOProcess
GO:0050681androgen receptor binding-ISOFunction
GO:0050769positive regulation of neurogenesis19934264.IDAProcess
GO:0051571positive regulation of histone H3-K4 methylation-ISOProcess
GO:0070562regulation of vitamin D receptor signaling pathway-ISOProcess
GO:0070564positive regulation of vitamin D receptor signaling pathway-ISOProcess
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071141SMAD protein complex-ISOComponent
GO:0071300cellular response to retinoic acid19934264.IDAProcess
GO:0071300cellular response to retinoic acid-ISOProcess

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