EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021040 (Gene tree)
Gene ID: 380773
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 8311 bases
Position: chr12:87443896-87452206
Accession: 1916394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000125341	RRM_1	PF00076.22	5.3e-14	1	1
ENSMUSP00000124174	RRM_1	PF00076.22	1.1e-13	1	1
ENSMUSP00000076673	RRM_1	PF00076.22	1.1e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000161023	-	2701	-	ENSMUSP00000125341	112 (aa)	-	Q9D8T7
ENSMUST00000160880	-	362	-	ENSMUSP00000125727	79 (aa)	-	F7DE82
ENSMUST00000077462	-	335	-	ENSMUSP00000076673	102 (aa)	-	F8WHU8
ENSMUST00000160488	-	802	-	ENSMUSP00000124174	99 (aa)	-	Q9D8T7

Gene Model

Click here to download ENSMUSG00000021040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021040's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000021040	Slirp	78	33.846	ENSMUSG00000069565	Dazap1	89	33.846
ENSMUSG00000021040	Slirp	73	33.846	ENSMUSG00000020358	Hnrnpab	51	33.846
ENSMUSG00000021040	Slirp	70	33.824	ENSMUSG00000069769	Msi2	60	33.824
ENSMUSG00000021040	Slirp	70	33.333	ENSMUSG00000000568	Hnrnpd	71	33.333
ENSMUSG00000021040	Slirp	76	30.588	ENSMUSG00000022194	Pabpn1	50	30.588

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021040	Slirp	76	80.000	ENSG00000119705	SLIRP	99	78.667	Homo_sapiens
ENSMUSG00000021040	Slirp	71	55.714	ENSAPOG00000001298	slirp	74	56.757	Acanthochromis_polyacanthus
ENSMUSG00000021040	Slirp	92	82.418	ENSAMEG00000003975	SLIRP	100	82.418	Ailuropoda_melanoleuca
ENSMUSG00000021040	Slirp	79	51.136	ENSACIG00000023083	slirp	85	51.136	Amphilophus_citrinellus
ENSMUSG00000021040	Slirp	80	51.111	ENSAOCG00000006342	slirp	90	51.111	Amphiprion_ocellaris
ENSMUSG00000021040	Slirp	80	51.111	ENSAPEG00000015719	-	91	51.111	Amphiprion_percula
ENSMUSG00000021040	Slirp	80	51.111	ENSAPEG00000015917	slirp	90	51.111	Amphiprion_percula
ENSMUSG00000021040	Slirp	71	52.857	ENSATEG00000013525	slirp	74	54.054	Anabas_testudineus
ENSMUSG00000021040	Slirp	78	49.425	ENSAMXG00000018693	slirp	87	49.425	Astyanax_mexicanus
ENSMUSG00000021040	Slirp	97	74.312	ENSCJAG00000016946	SLIRP	95	79.545	Callithrix_jacchus
ENSMUSG00000021040	Slirp	97	76.147	ENSCAFG00020015876	-	98	76.147	Canis_lupus_dingo
ENSMUSG00000021040	Slirp	97	75.229	ENSCCAG00000030130	SLIRP	98	75.229	Cebus_capucinus
ENSMUSG00000021040	Slirp	92	75.824	ENSCATG00000036327	SLIRP	95	77.273	Cercocebus_atys
ENSMUSG00000021040	Slirp	87	75.258	ENSCSAG00000011736	SLIRP	96	74.074	Chlorocebus_sabaeus
ENSMUSG00000021040	Slirp	87	49.425	ENSCPBG00000026327	SLIRP	88	49.425	Chrysemys_picta_bellii
ENSMUSG00000021040	Slirp	72	83.099	ENSCANG00000032892	SLIRP	90	76.136	Colobus_angolensis_palliatus
ENSMUSG00000021040	Slirp	97	68.807	ENSCGRG00001024068	Slirp	98	68.807	Cricetulus_griseus_chok1gshd
ENSMUSG00000021040	Slirp	97	68.807	ENSCGRG00000017440	Slirp	98	68.807	Cricetulus_griseus_crigri
ENSMUSG00000021040	Slirp	100	48.485	ENSCSEG00000015766	slirp	91	48.485	Cynoglossus_semilaevis
ENSMUSG00000021040	Slirp	70	62.319	ENSCVAG00000012504	slirp	80	54.321	Cyprinodon_variegatus
ENSMUSG00000021040	Slirp	72	56.338	ENSDARG00000097753	slirp	72	58.108	Danio_rerio
ENSMUSG00000021040	Slirp	79	69.663	ENSDNOG00000007721	SLIRP	98	66.055	Dasypus_novemcinctus
ENSMUSG00000021040	Slirp	99	72.973	ENSDORG00000012379	Slirp	100	72.973	Dipodomys_ordii
ENSMUSG00000021040	Slirp	88	70.408	ENSETEG00000010345	SLIRP	98	68.807	Echinops_telfairi
ENSMUSG00000021040	Slirp	99	80.180	ENSEASG00005020193	SLIRP	100	80.180	Equus_asinus_asinus
ENSMUSG00000021040	Slirp	90	60.396	ENSEEUG00000007257	SLIRP	99	60.396	Erinaceus_europaeus
ENSMUSG00000021040	Slirp	77	50.000	ENSELUG00000016800	slirp	84	50.000	Esox_lucius
ENSMUSG00000021040	Slirp	93	79.348	ENSFCAG00000036326	SLIRP	94	79.348	Felis_catus
ENSMUSG00000021040	Slirp	71	51.429	ENSFALG00000012583	SLIRP	86	47.312	Ficedula_albicollis
ENSMUSG00000021040	Slirp	91	69.608	ENSFDAG00000008347	SLIRP	90	69.608	Fukomys_damarensis
ENSMUSG00000021040	Slirp	71	48.750	ENSFHEG00000004709	slirp	86	48.750	Fundulus_heteroclitus
ENSMUSG00000021040	Slirp	71	55.714	ENSGMOG00000016948	slirp	72	57.333	Gadus_morhua
ENSMUSG00000021040	Slirp	83	50.000	ENSGALG00000031238	SLIRP	83	50.000	Gallus_gallus
ENSMUSG00000021040	Slirp	88	50.000	ENSGAFG00000010998	slirp	99	50.000	Gambusia_affinis
ENSMUSG00000021040	Slirp	73	55.556	ENSGACG00000020137	slirp	84	55.556	Gasterosteus_aculeatus
ENSMUSG00000021040	Slirp	90	57.778	ENSGAGG00000009953	SLIRP	73	52.336	Gopherus_agassizii
ENSMUSG00000021040	Slirp	78	77.922	ENSGGOG00000011059	-	95	77.273	Gorilla_gorilla
ENSMUSG00000021040	Slirp	97	62.385	ENSHGLG00000018491	SLIRP	98	62.385	Heterocephalus_glaber_female
ENSMUSG00000021040	Slirp	97	62.385	ENSHGLG00100014153	SLIRP	98	62.385	Heterocephalus_glaber_male
ENSMUSG00000021040	Slirp	72	60.563	ENSHCOG00000006795	slirp	88	53.409	Hippocampus_comes
ENSMUSG00000021040	Slirp	71	52.857	ENSIPUG00000010214	SLIRP	74	54.054	Ictalurus_punctatus
ENSMUSG00000021040	Slirp	88	79.592	ENSSTOG00000034316	SLIRP	98	77.982	Ictidomys_tridecemlineatus
ENSMUSG00000021040	Slirp	92	41.758	ENSKMAG00000002038	slirp	79	43.478	Kryptolebias_marmoratus
ENSMUSG00000021040	Slirp	78	50.575	ENSLBEG00000007564	slirp	87	50.575	Labrus_bergylta
ENSMUSG00000021040	Slirp	78	54.023	ENSLACG00000013434	SLIRP	83	54.023	Latimeria_chalumnae
ENSMUSG00000021040	Slirp	87	74.227	ENSMFAG00000042960	SLIRP	95	78.409	Macaca_fascicularis
ENSMUSG00000021040	Slirp	87	74.227	ENSMMUG00000029256	SLIRP	95	78.409	Macaca_mulatta
ENSMUSG00000021040	Slirp	87	74.227	ENSMNEG00000028921	SLIRP	95	78.409	Macaca_nemestrina
ENSMUSG00000021040	Slirp	89	77.273	ENSMLEG00000043644	SLIRP	90	77.273	Mandrillus_leucophaeus
ENSMUSG00000021040	Slirp	78	51.724	ENSMZEG00005004617	slirp	86	51.724	Maylandia_zebra
ENSMUSG00000021040	Slirp	97	71.560	ENSMAUG00000003857	Slirp	98	71.560	Mesocricetus_auratus
ENSMUSG00000021040	Slirp	95	72.340	ENSMICG00000012080	SLIRP	98	67.890	Microcebus_murinus
ENSMUSG00000021040	Slirp	100	75.893	ENSMOCG00000016019	Slirp	100	75.893	Microtus_ochrogaster
ENSMUSG00000021040	Slirp	71	52.857	ENSMMOG00000018268	slirp	75	53.333	Mola_mola
ENSMUSG00000021040	Slirp	70	65.217	ENSMODG00000005207	-	97	65.217	Monodelphis_domestica
ENSMUSG00000021040	Slirp	71	52.857	ENSMALG00000012581	slirp	77	53.333	Monopterus_albus
ENSMUSG00000021040	Slirp	100	98.214	MGP_CAROLIEiJ_G0017995	Slirp	100	99.074	Mus_caroli
ENSMUSG00000021040	Slirp	100	99.107	MGP_SPRETEiJ_G0018840	Slirp	100	99.107	Mus_spretus
ENSMUSG00000021040	Slirp	84	74.468	ENSMLUG00000024998	-	98	72.477	Myotis_lucifugus
ENSMUSG00000021040	Slirp	88	76.531	ENSMLUG00000029544	-	98	74.312	Myotis_lucifugus
ENSMUSG00000021040	Slirp	96	72.477	ENSNGAG00000016363	Slirp	100	72.477	Nannospalax_galili
ENSMUSG00000021040	Slirp	88	66.327	ENSNLEG00000027238	-	94	69.512	Nomascus_leucogenys
ENSMUSG00000021040	Slirp	96	67.593	ENSNLEG00000032459	-	95	72.727	Nomascus_leucogenys
ENSMUSG00000021040	Slirp	100	73.214	ENSODEG00000012580	SLIRP	100	73.913	Octodon_degus
ENSMUSG00000021040	Slirp	79	52.273	ENSONIG00000011692	slirp	87	52.273	Oreochromis_niloticus
ENSMUSG00000021040	Slirp	89	60.000	ENSOANG00000022366	SLIRP	86	59.375	Ornithorhynchus_anatinus
ENSMUSG00000021040	Slirp	79	49.438	ENSORLG00000010761	slirp	68	49.438	Oryzias_latipes
ENSMUSG00000021040	Slirp	79	50.562	ENSORLG00020022188	slirp	88	50.562	Oryzias_latipes_hni
ENSMUSG00000021040	Slirp	98	45.455	ENSORLG00015020171	slirp	99	45.455	Oryzias_latipes_hsok
ENSMUSG00000021040	Slirp	71	57.143	ENSOMEG00000019321	slirp	74	58.108	Oryzias_melastigma
ENSMUSG00000021040	Slirp	78	77.922	ENSPPAG00000040710	-	95	77.273	Pan_paniscus
ENSMUSG00000021040	Slirp	89	81.818	ENSPPRG00000014350	SLIRP	90	81.818	Panthera_pardus
ENSMUSG00000021040	Slirp	89	81.818	ENSPTIG00000014196	SLIRP	90	81.818	Panthera_tigris_altaica
ENSMUSG00000021040	Slirp	78	77.922	ENSPTRG00000030691	SLIRP	95	77.273	Pan_troglodytes
ENSMUSG00000021040	Slirp	96	73.148	ENSPANG00000026323	SLIRP	95	78.409	Papio_anubis
ENSMUSG00000021040	Slirp	62	52.459	ENSPKIG00000008831	slirp	64	52.308	Paramormyrops_kingsleyae
ENSMUSG00000021040	Slirp	69	63.235	ENSPMGG00000010541	slirp	78	63.235	Periophthalmus_magnuspinnatus
ENSMUSG00000021040	Slirp	89	79.775	ENSPEMG00000013234	Slirp	98	76.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000021040	Slirp	64	46.032	ENSPMAG00000009355	slirp	76	45.588	Petromyzon_marinus
ENSMUSG00000021040	Slirp	86	60.920	ENSPCIG00000026842	-	94	60.920	Phascolarctos_cinereus
ENSMUSG00000021040	Slirp	99	47.748	ENSPFOG00000006758	slirp	100	47.748	Poecilia_formosa
ENSMUSG00000021040	Slirp	99	47.748	ENSPLAG00000011140	slirp	100	47.748	Poecilia_latipinna
ENSMUSG00000021040	Slirp	99	47.748	ENSPMEG00000019535	slirp	100	47.748	Poecilia_mexicana
ENSMUSG00000021040	Slirp	92	52.747	ENSPREG00000011673	slirp	85	53.684	Poecilia_reticulata
ENSMUSG00000021040	Slirp	88	68.367	ENSPPYG00000006030	SLIRP	97	67.890	Pongo_abelii
ENSMUSG00000021040	Slirp	95	72.340	ENSPCOG00000015159	SLIRP	98	68.807	Propithecus_coquereli
ENSMUSG00000021040	Slirp	79	57.955	ENSPNAG00000008633	slirp	88	57.955	Pygocentrus_nattereri
ENSMUSG00000021040	Slirp	78	79.221	ENSRBIG00000032998	-	81	77.273	Rhinopithecus_bieti
ENSMUSG00000021040	Slirp	81	76.250	ENSRBIG00000031396	-	91	74.725	Rhinopithecus_bieti
ENSMUSG00000021040	Slirp	87	69.231	ENSRBIG00000035817	-	99	68.519	Rhinopithecus_bieti
ENSMUSG00000021040	Slirp	87	75.258	ENSRBIG00000032222	-	95	78.409	Rhinopithecus_bieti
ENSMUSG00000021040	Slirp	81	77.500	ENSRROG00000017133	-	95	75.824	Rhinopithecus_roxellana
ENSMUSG00000021040	Slirp	87	74.227	ENSRROG00000036656	-	95	77.273	Rhinopithecus_roxellana
ENSMUSG00000021040	Slirp	81	75.000	ENSRROG00000035604	-	91	73.626	Rhinopithecus_roxellana
ENSMUSG00000021040	Slirp	81	76.250	ENSRROG00000041312	-	91	75.000	Rhinopithecus_roxellana
ENSMUSG00000021040	Slirp	92	75.824	ENSSBOG00000020014	SLIRP	95	77.273	Saimiri_boliviensis_boliviensis
ENSMUSG00000021040	Slirp	69	63.235	ENSSFOG00015011165	slirp	71	61.429	Scleropages_formosus
ENSMUSG00000021040	Slirp	96	37.037	ENSSMAG00000012930	slirp	96	37.037	Scophthalmus_maximus
ENSMUSG00000021040	Slirp	71	60.000	ENSSLDG00000023136	slirp	68	60.000	Seriola_lalandi_dorsalis
ENSMUSG00000021040	Slirp	72	52.113	ENSSPUG00000009346	SLIRP	78	53.947	Sphenodon_punctatus
ENSMUSG00000021040	Slirp	71	52.857	ENSSPAG00000013477	slirp	74	52.703	Stegastes_partitus
ENSMUSG00000021040	Slirp	97	75.229	ENSSSCG00000028167	SLIRP	98	75.229	Sus_scrofa
ENSMUSG00000021040	Slirp	77	47.674	ENSTGUG00000012337	SLIRP	86	49.462	Taeniopygia_guttata
ENSMUSG00000021040	Slirp	79	50.633	ENSTRUG00000020127	slirp	75	52.632	Takifugu_rubripes
ENSMUSG00000021040	Slirp	97	77.982	ENSUAMG00000022445	SLIRP	98	77.982	Ursus_americanus
ENSMUSG00000021040	Slirp	97	78.899	ENSUMAG00000007166	SLIRP	98	78.899	Ursus_maritimus
ENSMUSG00000021040	Slirp	97	71.560	ENSVPAG00000001781	SLIRP	98	71.560	Vicugna_pacos
ENSMUSG00000021040	Slirp	83	83.871	ENSVVUG00000004436	SLIRP	98	78.899	Vulpes_vulpes
ENSMUSG00000021040	Slirp	71	57.143	ENSXETG00000030343	SLIRP	80	56.338	Xenopus_tropicalis
ENSMUSG00000021040	Slirp	98	47.273	ENSXCOG00000009422	slirp	99	47.273	Xiphophorus_couchianus
ENSMUSG00000021040	Slirp	98	47.273	ENSXMAG00000015655	slirp	99	47.273	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000961	negative regulation of mitochondrial RNA catabolic process	21873635.	IBA	Process
GO:0000961	negative regulation of mitochondrial RNA catabolic process	22045337.	IGI	Process
GO:0001669	acrosomal vesicle	23976951.	IDA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	23976951.	IDA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	22045337.23976951.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0007286	spermatid development	23976951.	IMP	Process
GO:0007338	single fertilization	23976951.	IMP	Process
GO:0030317	flagellated sperm motility	23976951.	IMP	Process
GO:0036126	sperm flagellum	23976951.	IDA	Component
GO:0048471	perinuclear region of cytoplasm	23976951.	IDA	Component
GO:0070584	mitochondrion morphogenesis	21873635.	IBA	Process
GO:0070584	mitochondrion morphogenesis	23976951.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	22045337.	IDA	Component