EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021144 (Gene tree)
Gene ID: 116870
Gene Symbol: Mta1
Alias: -
Full Name: metastasis associated 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 38929
Position: chr12: 113098278-113137206
Accession: 2150037
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156030	-	584	-	-	- (aa)	-	-
ENSMUST00000134488	-	717	-	-	- (aa)	-	-
ENSMUST00000109723	-	2790	-	ENSMUSP00000105345	703 (aa)	-	E9PX23
ENSMUST00000109726	-	2775	XM_006515421	ENSMUSP00000105348	698 (aa)	XP_006515484	F8WHY8
ENSMUST00000109727	-	2789	XM_006515425	ENSMUSP00000105349	703 (aa)	XP_006515488	E9PX23
ENSMUST00000069690	-	2697	-	ENSMUSP00000064338	698 (aa)	-	F8WHY8
ENSMUST00000009099	-	2826	XM_006515418	ENSMUSP00000009099	715 (aa)	XP_006515481	Q8K4B0
ENSMUST00000130926	-	2119	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021144's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021144	Mta1	100	59.610	ENSG00000149480	MTA2	100	59.275	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	24089055.	IDA	Function
GO:0001103	RNA polymerase II repressing transcription factor binding	21873635.	IBA	Function
GO:0001103	RNA polymerase II repressing transcription factor binding	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	IEA	Function
GO:0003713	transcription coactivator activity	21873635.	IBA	Function
GO:0003713	transcription coactivator activity	24089055.	IDA	Function
GO:0003713	transcription coactivator activity	21965678.	IMP	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003714	transcription corepressor activity	21873635.	IBA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0005515	protein binding	11836251.15978591.16462733.17666527.21555589.24089055.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11483358.15978591.16462733.20720167.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	15978591.24970816.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006302	double-strand break repair	19805145.	IMP	Process
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010212	response to ionizing radiation	21873635.	IBA	Process
GO:0010212	response to ionizing radiation	19805145.	IDA	Process
GO:0010212	response to ionizing radiation	-	ISO	Process
GO:0016575	histone deacetylation	21873635.	IBA	Process
GO:0016581	NuRD complex	21873635.	IBA	Component
GO:0016581	NuRD complex	16462733.	IPI	Component
GO:0016581	NuRD complex	-	ISO	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0032922	circadian regulation of gene expression	24089055.	IMP	Process
GO:0033363	secretory granule organization	-	ISO	Process
GO:0040029	regulation of gene expression, epigenetic	-	ISO	Process
GO:0042826	histone deacetylase binding	21873635.	IBA	Function
GO:0043153	entrainment of circadian clock by photoperiod	24089055.	IMP	Process
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0045475	locomotor rhythm	24089055.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048511	rhythmic process	-	IEA	Process
GO:1902499	positive regulation of protein autoubiquitination	-	ISO	Process