EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000085192	-	3399	XM_017314928	ENSMUSP00000082288	535 (aa)	XP_017170417	Q9EQ20
ENSMUST00000220491	-	470	-	ENSMUSP00000152269	135 (aa)	-	A0A1Y7VJ32
ENSMUST00000222641	-	3471	-	-	- (aa)	-	-
ENSMUST00000222062	-	2947	-	-	- (aa)	-	-
ENSMUST00000222656	-	565	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00280	Valine, leucine and isoleucine degradation	KEGG
mmu00410	beta-Alanine metabolism	KEGG
mmu00562	Inositol phosphate metabolism	KEGG
mmu00640	Propanoate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021238	Aldh6a1	98	65.583	WBGene00000114	alh-8	99	65.583	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity	21873635.	IBA	Function
GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity	-	ISO	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006210	thymine catabolic process	21873635.	IBA	Process
GO:0006210	thymine catabolic process	-	ISO	Process
GO:0006573	valine metabolic process	21873635.	IBA	Process
GO:0006573	valine metabolic process	-	ISO	Process
GO:0006574	valine catabolic process	21873635.	IBA	Process
GO:0006574	valine catabolic process	-	ISO	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0016790	thiolester hydrolase activity	-	ISO	Function
GO:0018478	malonate-semialdehyde dehydrogenase (acetylating) activity	21873635.	IBA	Function
GO:0018478	malonate-semialdehyde dehydrogenase (acetylating) activity	-	ISO	Function
GO:0019484	beta-alanine catabolic process	-	ISO	Process
GO:0019859	thymine metabolic process	-	ISO	Process
GO:0050873	brown fat cell differentiation	18492766.	IDA	Process