EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	1	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	2	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	3	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	4	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	5	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	6	7
ENSMUSP00000153241	zf-C2H2	PF00096.26	5.7e-45	7	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	1	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	2	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	3	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	4	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	5	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	6	7
ENSMUSP00000068424	zf-C2H2	PF00096.26	1.1e-43	7	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	1	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	2	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	3	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	4	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	5	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	6	7
ENSMUSP00000112135	zf-C2H2	PF00096.26	1.1e-43	7	7
ENSMUSP00000153241	zf-met	PF12874.7	6.7e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000117721	-	5788	-	ENSMUSP00000112862	257 (aa)	-	D3YTV4
ENSMUST00000223831	-	2101	XM_006516791	ENSMUSP00000153241	386 (aa)	XP_006516854	A0A286YD32
ENSMUST00000151467	-	674	-	-	- (aa)	-	-
ENSMUST00000116434	-	2600	-	ENSMUSP00000112135	553 (aa)	-	A0A0R4J1L3
ENSMUST00000224820	-	5398	-	ENSMUSP00000153231	281 (aa)	-	A0A286YDF9
ENSMUST00000116433	-	1421	-	ENSMUSP00000112134	298 (aa)	-	Q5RJ53
ENSMUST00000145631	-	436	-	-	- (aa)	-	-
ENSMUST00000070785	-	2561	XM_006516789	ENSMUSP00000068424	553 (aa)	XP_006516852	A0A0R4J1L3

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000021327	Zkscan3	63	49.333	ENSMUSG00000059689	Zfp637	75	49.333
ENSMUSG00000021327	Zkscan3	97	72.531	ENSMUSG00000054931	Zkscan4	99	56.642
ENSMUSG00000021327	Zkscan3	83	43.802	ENSMUSG00000074472	Zfp872	93	33.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021327	Zkscan3	100	93.852	ENSCGRG00001006591	Zkscan3	100	93.852	Cricetulus_griseus_chok1gshd
ENSMUSG00000021327	Zkscan3	100	93.852	ENSCGRG00000001582	Zkscan3	100	93.852	Cricetulus_griseus_crigri
ENSMUSG00000021327	Zkscan3	99	79.740	ENSJJAG00000004576	-	99	78.881	Jaculus_jaculus
ENSMUSG00000021327	Zkscan3	100	93.852	ENSMAUG00000009785	Zkscan3	100	93.852	Mesocricetus_auratus
ENSMUSG00000021327	Zkscan3	100	94.394	ENSMOCG00000017860	Zkscan3	100	94.394	Microtus_ochrogaster
ENSMUSG00000021327	Zkscan3	97	71.338	MGP_CAROLIEiJ_G0018274	Zkscan4	99	56.147	Mus_caroli
ENSMUSG00000021327	Zkscan3	84	77.817	MGP_PahariEiJ_G0019324	Zkscan4	99	77.596	Mus_pahari
ENSMUSG00000021327	Zkscan3	97	79.021	MGP_SPRETEiJ_G0019129	Zkscan4	99	56.827	Mus_spretus
ENSMUSG00000021327	Zkscan3	96	65.378	ENSPCAG00000000195	ZKSCAN4	99	65.378	Procavia_capensis
ENSMUSG00000021327	Zkscan3	97	68.934	ENSSSCG00000001204	ZKSCAN4	99	68.934	Sus_scrofa
ENSMUSG00000021327	Zkscan3	85	70.091	ENSTTRG00000015632	-	99	63.636	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006914	autophagy	-	IEA	Process
GO:0007040	lysosome organization	-	ISO	Process
GO:0010507	negative regulation of autophagy	-	ISO	Process
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:2000773	negative regulation of cellular senescence	-	ISO	Process