EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021392 (Gene tree)
Gene ID: 70930
Gene Symbol: Nol8
Alias: 4921532D18Rik|5730412B09Rik|D13Ertd548e
Full Name: nucleolar protein 8
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 25939 bases
Position: chr13:49653078-49679016
Accession: 1918180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000152517	RRM_1	PF00076.22	6.3e-08	1	1
ENSMUSP00000152324	RRM_1	PF00076.22	1.7e-07	1	1
ENSMUSP00000152186	RRM_1	PF00076.22	2.6e-07	1	1
ENSMUSP00000152552	RRM_1	PF00076.22	3.1e-06	1	1
ENSMUSP00000152878	RRM_1	PF00076.22	3.1e-06	1	1
ENSMUSP00000021824	RRM_1	PF00076.22	3.2e-06	1	1
ENSMUSP00000152536	RRM_1	PF00076.22	3.2e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000221142	-	4381	-	ENSMUSP00000152552	1147 (aa)	-	Q3UHX0
ENSMUST00000223467	-	4765	XM_006516956	ENSMUSP00000152878	1147 (aa)	XP_006517019	Q3UHX0
ENSMUST00000222333	-	600	-	ENSMUSP00000152324	145 (aa)	-	A0A1Y7VNA8
ENSMUST00000223346	-	3239	-	-	- (aa)	-	-
ENSMUST00000223264	-	363	-	ENSMUSP00000152517	93 (aa)	-	A0A1Y7VJP6
ENSMUST00000021824	-	4242	-	ENSMUSP00000021824	1165 (aa)	-	E9QKD1
ENSMUST00000222197	-	4368	XM_006516957	ENSMUSP00000152536	1165 (aa)	XP_006517020	E9QKD1
ENSMUST00000221328	-	2424	-	-	- (aa)	-	-
ENSMUST00000221083	-	745	-	ENSMUSP00000152186	225 (aa)	-	A0A1Y7VN09

Gene Model

Click here to download ENSMUSG00000021392's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021392's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000021392	Nol8	89	32.143	ENSMUSG00000031134	Rbmx	79	32.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021392	Nol8	100	84.946	ENSG00000198000	NOL8	100	89.908	Homo_sapiens
ENSMUSG00000021392	Nol8	94	60.920	ENSAPOG00000008905	-	74	59.783	Acanthochromis_polyacanthus
ENSMUSG00000021392	Nol8	100	84.946	ENSAMEG00000013488	NOL8	99	55.081	Ailuropoda_melanoleuca
ENSMUSG00000021392	Nol8	94	60.920	ENSAOCG00000003570	-	97	61.364	Amphiprion_ocellaris
ENSMUSG00000021392	Nol8	90	37.500	ENSAPEG00000020964	-	96	34.426	Amphiprion_percula
ENSMUSG00000021392	Nol8	94	60.920	ENSAPEG00000004400	-	97	61.364	Amphiprion_percula
ENSMUSG00000021392	Nol8	94	58.621	ENSATEG00000002107	nol8	93	38.235	Anabas_testudineus
ENSMUSG00000021392	Nol8	100	66.667	ENSAPLG00000005526	NOL8	86	49.425	Anas_platyrhynchos
ENSMUSG00000021392	Nol8	94	67.816	ENSACAG00000009201	NOL8	58	39.256	Anolis_carolinensis
ENSMUSG00000021392	Nol8	100	83.871	ENSANAG00000033271	NOL8	99	61.722	Aotus_nancymaae
ENSMUSG00000021392	Nol8	94	63.218	ENSACLG00000004270	nol8	62	42.338	Astatotilapia_calliptera
ENSMUSG00000021392	Nol8	100	62.366	ENSAMXG00000029217	-	90	62.766	Astyanax_mexicanus
ENSMUSG00000021392	Nol8	100	90.323	ENSBTAG00000018613	NOL8	99	60.017	Bos_taurus
ENSMUSG00000021392	Nol8	100	84.444	ENSCJAG00000039875	NOL8	99	62.553	Callithrix_jacchus
ENSMUSG00000021392	Nol8	99	74.107	ENSCAFG00000002324	NOL8	99	54.195	Canis_familiaris
ENSMUSG00000021392	Nol8	99	74.554	ENSCAFG00020009514	NOL8	99	54.281	Canis_lupus_dingo
ENSMUSG00000021392	Nol8	100	89.247	ENSCHIG00000023837	NOL8	99	60.477	Capra_hircus
ENSMUSG00000021392	Nol8	100	86.022	ENSTSYG00000006661	NOL8	99	61.073	Carlito_syrichta
ENSMUSG00000021392	Nol8	100	87.097	ENSCPOG00000031767	-	100	87.234	Cavia_porcellus
ENSMUSG00000021392	Nol8	100	76.190	ENSCCAG00000026399	NOL8	92	74.468	Cebus_capucinus
ENSMUSG00000021392	Nol8	99	80.435	ENSCATG00000038353	-	80	80.435	Cercocebus_atys
ENSMUSG00000021392	Nol8	100	75.269	ENSCATG00000035530	NOL8	99	60.390	Cercocebus_atys
ENSMUSG00000021392	Nol8	100	84.946	ENSCLAG00000001434	NOL8	99	63.167	Chinchilla_lanigera
ENSMUSG00000021392	Nol8	100	67.742	ENSCPBG00000006773	NOL8	60	39.079	Chrysemys_picta_bellii
ENSMUSG00000021392	Nol8	100	70.000	ENSCANG00000033400	NOL8	99	59.434	Colobus_angolensis_palliatus
ENSMUSG00000021392	Nol8	100	79.570	ENSCANG00000032736	-	99	78.641	Colobus_angolensis_palliatus
ENSMUSG00000021392	Nol8	100	92.473	ENSCGRG00001016459	-	100	92.553	Cricetulus_griseus_chok1gshd
ENSMUSG00000021392	Nol8	100	92.473	ENSCGRG00000016885	-	100	92.553	Cricetulus_griseus_crigri
ENSMUSG00000021392	Nol8	97	57.778	ENSCSEG00000012803	-	97	58.242	Cynoglossus_semilaevis
ENSMUSG00000021392	Nol8	94	59.770	ENSCVAG00000009871	-	91	60.227	Cyprinodon_variegatus
ENSMUSG00000021392	Nol8	94	66.667	ENSDARG00000044143	nol8	73	40.034	Danio_rerio
ENSMUSG00000021392	Nol8	100	82.796	ENSDNOG00000019774	NOL8	99	57.939	Dasypus_novemcinctus
ENSMUSG00000021392	Nol8	100	86.022	ENSDORG00000025458	-	100	86.170	Dipodomys_ordii
ENSMUSG00000021392	Nol8	99	79.348	ENSETEG00000016881	NOL8	99	51.157	Echinops_telfairi
ENSMUSG00000021392	Nol8	100	81.720	ENSEASG00005013182	NOL8	99	58.208	Equus_asinus_asinus
ENSMUSG00000021392	Nol8	100	81.778	ENSECAG00000022362	NOL8	99	58.753	Equus_caballus
ENSMUSG00000021392	Nol8	96	53.982	ENSELUG00000015288	nol8	78	53.165	Esox_lucius
ENSMUSG00000021392	Nol8	100	83.871	ENSFCAG00000000818	NOL8	77	80.808	Felis_catus
ENSMUSG00000021392	Nol8	100	63.441	ENSFALG00000009066	NOL8	99	38.749	Ficedula_albicollis
ENSMUSG00000021392	Nol8	100	89.247	ENSFDAG00000016216	-	100	89.362	Fukomys_damarensis
ENSMUSG00000021392	Nol8	94	63.218	ENSFHEG00000017935	-	91	63.636	Fundulus_heteroclitus
ENSMUSG00000021392	Nol8	100	64.516	ENSGALG00000004750	NOL8	99	39.141	Gallus_gallus
ENSMUSG00000021392	Nol8	94	63.218	ENSGAFG00000001708	-	81	62.921	Gambusia_affinis
ENSMUSG00000021392	Nol8	98	60.440	ENSGACG00000004077	nol8	87	38.389	Gasterosteus_aculeatus
ENSMUSG00000021392	Nol8	74	57.971	ENSGAGG00000002984	-	90	57.971	Gopherus_agassizii
ENSMUSG00000021392	Nol8	98	56.044	ENSGAGG00000004839	-	90	56.044	Gopherus_agassizii
ENSMUSG00000021392	Nol8	98	52.747	ENSGAGG00000002268	-	90	52.747	Gopherus_agassizii
ENSMUSG00000021392	Nol8	100	51.613	ENSGAGG00000001685	-	86	51.613	Gopherus_agassizii
ENSMUSG00000021392	Nol8	73	58.824	ENSGAGG00000010376	-	86	58.824	Gopherus_agassizii
ENSMUSG00000021392	Nol8	81	61.333	ENSGAGG00000002259	-	86	61.333	Gopherus_agassizii
ENSMUSG00000021392	Nol8	51	82.979	ENSGGOG00000025612	NOL8	60	65.625	Gorilla_gorilla
ENSMUSG00000021392	Nol8	100	73.118	ENSGGOG00000023838	-	98	68.687	Gorilla_gorilla
ENSMUSG00000021392	Nol8	100	88.172	ENSHGLG00000010060	-	100	88.298	Heterocephalus_glaber_female
ENSMUSG00000021392	Nol8	98	83.516	ENSHGLG00000001400	-	55	83.516	Heterocephalus_glaber_female
ENSMUSG00000021392	Nol8	100	88.172	ENSHGLG00100012858	-	100	88.298	Heterocephalus_glaber_male
ENSMUSG00000021392	Nol8	98	83.516	ENSHGLG00100012643	-	55	83.516	Heterocephalus_glaber_male
ENSMUSG00000021392	Nol8	100	88.172	ENSHGLG00100002570	-	75	84.848	Heterocephalus_glaber_male
ENSMUSG00000021392	Nol8	94	59.770	ENSHCOG00000012856	nol8	77	57.609	Hippocampus_comes
ENSMUSG00000021392	Nol8	94	66.667	ENSIPUG00000010933	nol8	99	36.296	Ictalurus_punctatus
ENSMUSG00000021392	Nol8	100	86.022	ENSSTOG00000015195	NOL8	99	61.717	Ictidomys_tridecemlineatus
ENSMUSG00000021392	Nol8	100	84.946	ENSJJAG00000011518	-	77	81.818	Jaculus_jaculus
ENSMUSG00000021392	Nol8	96	55.556	ENSKMAG00000015508	-	68	41.885	Kryptolebias_marmoratus
ENSMUSG00000021392	Nol8	94	64.368	ENSLBEG00000026169	nol8	64	42.228	Labrus_bergylta
ENSMUSG00000021392	Nol8	100	63.441	ENSLACG00000018898	NOL8	51	37.157	Latimeria_chalumnae
ENSMUSG00000021392	Nol8	100	61.290	ENSLOCG00000013864	nol8	86	41.468	Lepisosteus_oculatus
ENSMUSG00000021392	Nol8	100	80.645	ENSLAFG00000002184	NOL8	99	56.533	Loxodonta_africana
ENSMUSG00000021392	Nol8	100	84.946	ENSMFAG00000034500	NOL8	96	83.505	Macaca_fascicularis
ENSMUSG00000021392	Nol8	100	81.720	ENSMFAG00000031716	-	79	79.348	Macaca_fascicularis
ENSMUSG00000021392	Nol8	100	84.946	ENSMMUG00000004629	NOL8	99	63.305	Macaca_mulatta
ENSMUSG00000021392	Nol8	100	81.720	ENSMMUG00000039189	-	99	52.442	Macaca_mulatta
ENSMUSG00000021392	Nol8	100	80.645	ENSMNEG00000005430	-	98	80.097	Macaca_nemestrina
ENSMUSG00000021392	Nol8	100	84.946	ENSMNEG00000036927	NOL8	96	83.505	Macaca_nemestrina
ENSMUSG00000021392	Nol8	100	83.871	ENSMLEG00000037641	NOL8	96	82.474	Mandrillus_leucophaeus
ENSMUSG00000021392	Nol8	88	80.488	ENSMLEG00000035584	-	72	80.488	Mandrillus_leucophaeus
ENSMUSG00000021392	Nol8	91	62.353	ENSMAMG00000000989	-	98	57.732	Mastacembelus_armatus
ENSMUSG00000021392	Nol8	94	63.218	ENSMZEG00005017111	nol8	63	42.338	Maylandia_zebra
ENSMUSG00000021392	Nol8	100	62.366	ENSMGAG00000004495	NOL8	51	39.869	Meleagris_gallopavo
ENSMUSG00000021392	Nol8	100	94.624	ENSMAUG00000008173	-	100	94.681	Mesocricetus_auratus
ENSMUSG00000021392	Nol8	100	80.645	ENSMICG00000014322	NOL8	99	59.471	Microcebus_murinus
ENSMUSG00000021392	Nol8	100	93.548	ENSMOCG00000008757	-	100	93.617	Microtus_ochrogaster
ENSMUSG00000021392	Nol8	94	58.621	ENSMMOG00000013534	-	97	55.102	Mola_mola
ENSMUSG00000021392	Nol8	95	61.364	ENSMODG00000020877	-	99	41.167	Monodelphis_domestica
ENSMUSG00000021392	Nol8	94	59.770	ENSMALG00000022669	-	93	58.889	Monopterus_albus
ENSMUSG00000021392	Nol8	100	96.000	MGP_CAROLIEiJ_G0018509	Nol8	100	95.451	Mus_caroli
ENSMUSG00000021392	Nol8	100	95.699	MGP_PahariEiJ_G0019575	Nol8	100	92.361	Mus_pahari
ENSMUSG00000021392	Nol8	100	98.925	MGP_SPRETEiJ_G0019389	Nol8	100	97.942	Mus_spretus
ENSMUSG00000021392	Nol8	100	80.645	ENSMPUG00000004748	NOL8	99	56.775	Mustela_putorius_furo
ENSMUSG00000021392	Nol8	100	78.495	ENSMLUG00000015204	NOL8	99	56.596	Myotis_lucifugus
ENSMUSG00000021392	Nol8	100	84.946	ENSNGAG00000021592	-	100	85.106	Nannospalax_galili
ENSMUSG00000021392	Nol8	92	62.791	ENSNBRG00000012679	-	78	55.882	Neolamprologus_brichardi
ENSMUSG00000021392	Nol8	100	83.871	ENSNLEG00000016357	NOL8	96	82.474	Nomascus_leucogenys
ENSMUSG00000021392	Nol8	96	78.652	ENSNLEG00000028854	-	80	78.652	Nomascus_leucogenys
ENSMUSG00000021392	Nol8	100	77.419	ENSOPRG00000003268	NOL8	87	64.133	Ochotona_princeps
ENSMUSG00000021392	Nol8	94	63.218	ENSONIG00000000491	nol8	98	56.422	Oreochromis_niloticus
ENSMUSG00000021392	Nol8	100	87.097	ENSOCUG00000008053	-	100	56.306	Oryctolagus_cuniculus
ENSMUSG00000021392	Nol8	94	58.621	ENSORLG00000019906	nol8	88	37.528	Oryzias_latipes
ENSMUSG00000021392	Nol8	94	58.621	ENSORLG00020010643	nol8	89	37.330	Oryzias_latipes_hni
ENSMUSG00000021392	Nol8	94	59.770	ENSORLG00015007152	nol8	88	36.878	Oryzias_latipes_hsok
ENSMUSG00000021392	Nol8	94	57.471	ENSOMEG00000003904	nol8	93	39.002	Oryzias_melastigma
ENSMUSG00000021392	Nol8	100	83.871	ENSOGAG00000015009	-	100	57.848	Otolemur_garnettii
ENSMUSG00000021392	Nol8	100	86.022	ENSOARG00000008299	NOL8	99	60.119	Ovis_aries
ENSMUSG00000021392	Nol8	100	83.871	ENSPPAG00000002204	NOL8	93	84.043	Pan_paniscus
ENSMUSG00000021392	Nol8	100	83.871	ENSPPRG00000008693	NOL8	77	80.808	Panthera_pardus
ENSMUSG00000021392	Nol8	100	83.871	ENSPTIG00000015402	NOL8	77	80.808	Panthera_tigris_altaica
ENSMUSG00000021392	Nol8	100	84.946	ENSPTRG00000021109	NOL8	93	85.106	Pan_troglodytes
ENSMUSG00000021392	Nol8	100	84.946	ENSPANG00000024725	NOL8	96	83.505	Papio_anubis
ENSMUSG00000021392	Nol8	100	81.720	ENSPANG00000033194	-	91	80.412	Papio_anubis
ENSMUSG00000021392	Nol8	100	81.720	ENSPANG00000031553	-	87	77.465	Papio_anubis
ENSMUSG00000021392	Nol8	92	59.302	ENSPMGG00000014670	-	73	56.383	Periophthalmus_magnuspinnatus
ENSMUSG00000021392	Nol8	100	92.473	ENSPEMG00000012756	Nol8	100	92.553	Peromyscus_maniculatus_bairdii
ENSMUSG00000021392	Nol8	94	64.368	ENSPFOG00000002057	nol8	87	40.783	Poecilia_formosa
ENSMUSG00000021392	Nol8	94	64.368	ENSPLAG00000008235	-	96	64.045	Poecilia_latipinna
ENSMUSG00000021392	Nol8	94	64.368	ENSPMEG00000006567	-	96	64.045	Poecilia_mexicana
ENSMUSG00000021392	Nol8	94	64.368	ENSPREG00000010175	-	92	64.045	Poecilia_reticulata
ENSMUSG00000021392	Nol8	100	84.946	ENSPPYG00000019375	NOL8	99	62.383	Pongo_abelii
ENSMUSG00000021392	Nol8	100	64.516	ENSPCAG00000004501	NOL8	99	49.491	Procavia_capensis
ENSMUSG00000021392	Nol8	100	84.946	ENSPCOG00000020573	-	99	63.001	Propithecus_coquereli
ENSMUSG00000021392	Nol8	72	80.597	ENSPVAG00000010582	NOL8	85	65.468	Pteropus_vampyrus
ENSMUSG00000021392	Nol8	92	61.628	ENSPNYG00000002021	-	85	60.440	Pundamilia_nyererei
ENSMUSG00000021392	Nol8	94	63.218	ENSPNAG00000029992	nol8	99	36.756	Pygocentrus_nattereri
ENSMUSG00000021392	Nol8	100	91.398	ENSRNOG00000046968	Nol8	99	85.150	Rattus_norvegicus
ENSMUSG00000021392	Nol8	100	91.398	ENSRNOG00000045569	Nol8	99	85.150	Rattus_norvegicus
ENSMUSG00000021392	Nol8	98	83.516	ENSRBIG00000036444	NOL8	99	62.046	Rhinopithecus_bieti
ENSMUSG00000021392	Nol8	100	80.645	ENSRBIG00000011855	-	87	81.000	Rhinopithecus_bieti
ENSMUSG00000021392	Nol8	100	79.570	ENSRROG00000033368	-	87	80.000	Rhinopithecus_roxellana
ENSMUSG00000021392	Nol8	100	83.871	ENSRROG00000043673	NOL8	96	82.474	Rhinopithecus_roxellana
ENSMUSG00000021392	Nol8	100	82.796	ENSSBOG00000024228	NOL8	96	81.443	Saimiri_boliviensis_boliviensis
ENSMUSG00000021392	Nol8	100	56.989	ENSSFOG00015002403	nol8	99	35.129	Scleropages_formosus
ENSMUSG00000021392	Nol8	100	61.702	ENSSMAG00000004064	-	99	61.702	Scophthalmus_maximus
ENSMUSG00000021392	Nol8	94	60.920	ENSSDUG00000019240	nol8	67	42.078	Seriola_dumerili
ENSMUSG00000021392	Nol8	94	60.920	ENSSLDG00000007021	-	95	60.440	Seriola_lalandi_dorsalis
ENSMUSG00000021392	Nol8	100	81.720	ENSSARG00000010607	-	84	79.268	Sorex_araneus
ENSMUSG00000021392	Nol8	100	87.097	ENSSSCG00000008069	NOL8	99	58.007	Sus_scrofa
ENSMUSG00000021392	Nol8	94	55.172	ENSTRUG00000009278	nol8	81	53.846	Takifugu_rubripes
ENSMUSG00000021392	Nol8	98	57.143	ENSTNIG00000002673	-	99	54.751	Tetraodon_nigroviridis
ENSMUSG00000021392	Nol8	100	88.172	ENSTBEG00000014187	NOL8	91	55.718	Tupaia_belangeri
ENSMUSG00000021392	Nol8	95	86.364	ENSTTRG00000008244	NOL8	99	59.168	Tursiops_truncatus
ENSMUSG00000021392	Nol8	100	84.946	ENSUAMG00000013803	NOL8	99	55.517	Ursus_americanus
ENSMUSG00000021392	Nol8	100	84.946	ENSUMAG00000015496	NOL8	99	54.957	Ursus_maritimus
ENSMUSG00000021392	Nol8	100	73.128	ENSVVUG00000005127	NOL8	99	54.750	Vulpes_vulpes
ENSMUSG00000021392	Nol8	94	66.667	ENSXETG00000020913	nol8	97	42.925	Xenopus_tropicalis
ENSMUSG00000021392	Nol8	92	61.628	ENSXMAG00000027913	-	81	60.674	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:1902570	protein localization to nucleolus	-	ISO	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process