EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021413 (Gene tree)
Gene ID: 19134
Gene Symbol: Prpf4b
Alias: Prp4|Prp4k|Prpk
Full Name: pre-mRNA processing factor 4B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 30763
Position: chr13: 34875302-34906064
Accession: 109584
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000221156	-	419	-	-	- (aa)	-	-
ENSMUST00000220965	-	2572	-	ENSMUSP00000152349	393 (aa)	-	A0A1Y7VLT3
ENSMUST00000077853	-	7844	XM_006516582	ENSMUSP00000077019	1007 (aa)	XP_006516645	Q61136
ENSMUST00000221077	-	791	-	ENSMUSP00000152545	70 (aa)	-	A0A1Y7VM68
ENSMUST00000222509	-	3648	-	ENSMUSP00000152654	1007 (aa)	-	Q61136
ENSMUST00000222834	-	937	-	-	- (aa)	-	-
ENSMUST00000221639	-	1727	-	-	- (aa)	-	-
ENSMUST00000223228	-	520	-	-	- (aa)	-	-
ENSMUST00000221784	-	958	-	-	- (aa)	-	-
ENSMUST00000221087	-	676	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021413's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021413	Prpf4b	100	95.040	ENSG00000112739	PRPF4B	100	98.807	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0004672	protein kinase activity	21873635.	IBA	Function
GO:0004672	protein kinase activity	9102632.	ISS	Function
GO:0004674	protein serine/threonine kinase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005694	chromosome	9701556.	IDA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006468	protein phosphorylation	21873635.	IBA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component