EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021418 (Gene tree)
Gene ID: 208366
Gene Symbol: Rpp40
Alias: D8Bwg1265e|Rnasep1
Full Name: ribonuclease P 40 subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12888 bases
Position: chr13:35893472-35906359
Accession: 1346084
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000130290	Ribonuc_P_40	PF08584.11	2.5e-93	1	1
ENSMUSP00000134228	Ribonuc_P_40	PF08584.11	1.7e-77	1	1
ENSMUSP00000134210	Ribonuc_P_40	PF08584.11	4.7e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174230	-	1053	-	ENSMUSP00000134228	340 (aa)	-	G3UYU5
ENSMUST00000174231	-	276	-	ENSMUSP00000134210	84 (aa)	-	G3UYT2
ENSMUST00000171686	-	4380	XM_006516631	ENSMUSP00000130290	363 (aa)	XP_006516694	Q8R1F9
ENSMUST00000174852	-	3269	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021418's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021418's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021418	Rpp40	100	84.298	ENSG00000124787	RPP40	100	84.298	Homo_sapiens
ENSMUSG00000021418	Rpp40	76	48.438	ENSAPOG00000008660	rpp40	92	30.435	Acanthochromis_polyacanthus
ENSMUSG00000021418	Rpp40	100	87.052	ENSAMEG00000012938	RPP40	100	87.052	Ailuropoda_melanoleuca
ENSMUSG00000021418	Rpp40	98	36.695	ENSACIG00000003617	rpp40	98	36.695	Amphilophus_citrinellus
ENSMUSG00000021418	Rpp40	98	37.535	ENSAOCG00000011846	rpp40	99	37.535	Amphiprion_ocellaris
ENSMUSG00000021418	Rpp40	98	37.535	ENSAPEG00000001322	rpp40	99	37.535	Amphiprion_percula
ENSMUSG00000021418	Rpp40	98	38.997	ENSATEG00000006584	rpp40	99	39.276	Anabas_testudineus
ENSMUSG00000021418	Rpp40	76	82.812	ENSAPLG00000005691	RPP40	99	68.212	Anas_platyrhynchos
ENSMUSG00000021418	Rpp40	99	63.788	ENSACAG00000006550	RPP40	88	63.788	Anolis_carolinensis
ENSMUSG00000021418	Rpp40	100	81.818	ENSANAG00000029246	RPP40	100	81.818	Aotus_nancymaae
ENSMUSG00000021418	Rpp40	98	38.873	ENSACLG00000015883	rpp40	96	38.873	Astatotilapia_calliptera
ENSMUSG00000021418	Rpp40	76	71.875	ENSAMXG00000001755	rpp40	99	48.179	Astyanax_mexicanus
ENSMUSG00000021418	Rpp40	100	84.298	ENSBTAG00000003332	RPP40	100	84.298	Bos_taurus
ENSMUSG00000021418	Rpp40	100	82.920	ENSCJAG00000021373	RPP40	100	82.920	Callithrix_jacchus
ENSMUSG00000021418	Rpp40	100	85.950	ENSCAFG00000009435	RPP40	100	85.950	Canis_familiaris
ENSMUSG00000021418	Rpp40	100	85.950	ENSCAFG00020013380	RPP40	100	85.950	Canis_lupus_dingo
ENSMUSG00000021418	Rpp40	100	84.298	ENSCHIG00000016849	RPP40	100	84.298	Capra_hircus
ENSMUSG00000021418	Rpp40	100	86.765	ENSTSYG00000032857	RPP40	100	86.765	Carlito_syrichta
ENSMUSG00000021418	Rpp40	90	77.676	ENSCAPG00000004957	RPP40	98	77.676	Cavia_aperea
ENSMUSG00000021418	Rpp40	100	85.294	ENSCPOG00000005855	RPP40	100	85.294	Cavia_porcellus
ENSMUSG00000021418	Rpp40	100	82.941	ENSCCAG00000019809	RPP40	100	82.941	Cebus_capucinus
ENSMUSG00000021418	Rpp40	100	83.747	ENSCATG00000038787	RPP40	100	83.747	Cercocebus_atys
ENSMUSG00000021418	Rpp40	100	84.118	ENSCLAG00000003235	RPP40	100	84.118	Chinchilla_lanigera
ENSMUSG00000021418	Rpp40	100	84.022	ENSCSAG00000007307	RPP40	100	84.022	Chlorocebus_sabaeus
ENSMUSG00000021418	Rpp40	77	89.231	ENSCHOG00000005856	-	100	65.600	Choloepus_hoffmanni
ENSMUSG00000021418	Rpp40	99	70.000	ENSCPBG00000009003	RPP40	99	70.000	Chrysemys_picta_bellii
ENSMUSG00000021418	Rpp40	100	84.298	ENSCANG00000033965	RPP40	100	84.298	Colobus_angolensis_palliatus
ENSMUSG00000021418	Rpp40	100	85.675	ENSCGRG00001018328	Rpp40	100	85.675	Cricetulus_griseus_chok1gshd
ENSMUSG00000021418	Rpp40	100	85.675	ENSCGRG00000011344	Rpp40	100	85.675	Cricetulus_griseus_crigri
ENSMUSG00000021418	Rpp40	98	35.393	ENSCSEG00000015006	-	98	35.393	Cynoglossus_semilaevis
ENSMUSG00000021418	Rpp40	65	50.909	ENSCVAG00000012169	rpp40	100	33.579	Cyprinodon_variegatus
ENSMUSG00000021418	Rpp40	98	50.279	ENSDARG00000017605	rpp40	99	50.279	Danio_rerio
ENSMUSG00000021418	Rpp40	82	80.135	ENSDNOG00000048136	RPP40	99	80.135	Dasypus_novemcinctus
ENSMUSG00000021418	Rpp40	100	82.369	ENSDORG00000029944	-	100	82.369	Dipodomys_ordii
ENSMUSG00000021418	Rpp40	100	61.930	ENSDORG00000011196	-	100	61.930	Dipodomys_ordii
ENSMUSG00000021418	Rpp40	100	67.218	ENSETEG00000007458	RPP40	100	67.218	Echinops_telfairi
ENSMUSG00000021418	Rpp40	98	45.915	ENSEBUG00000000386	rpp40	99	45.915	Eptatretus_burgeri
ENSMUSG00000021418	Rpp40	100	85.399	ENSEASG00005012116	RPP40	80	85.399	Equus_asinus_asinus
ENSMUSG00000021418	Rpp40	100	85.950	ENSECAG00000017247	RPP40	80	85.950	Equus_caballus
ENSMUSG00000021418	Rpp40	68	85.366	ENSEEUG00000012087	RPP40	100	65.320	Erinaceus_europaeus
ENSMUSG00000021418	Rpp40	98	48.324	ENSELUG00000017004	rpp40	99	48.324	Esox_lucius
ENSMUSG00000021418	Rpp40	100	85.588	ENSFCAG00000009249	RPP40	100	85.588	Felis_catus
ENSMUSG00000021418	Rpp40	76	82.812	ENSFALG00000013166	RPP40	100	64.832	Ficedula_albicollis
ENSMUSG00000021418	Rpp40	100	85.124	ENSFDAG00000013001	-	100	85.124	Fukomys_damarensis
ENSMUSG00000021418	Rpp40	80	68.493	ENSFDAG00000000265	-	99	68.493	Fukomys_damarensis
ENSMUSG00000021418	Rpp40	98	39.496	ENSFHEG00000021429	rpp40	88	39.496	Fundulus_heteroclitus
ENSMUSG00000021418	Rpp40	71	61.667	ENSGMOG00000018653	rpp40	100	39.130	Gadus_morhua
ENSMUSG00000021418	Rpp40	99	66.111	ENSGALG00000036074	RPP40	99	66.111	Gallus_gallus
ENSMUSG00000021418	Rpp40	82	35.235	ENSGAFG00000004189	-	98	35.235	Gambusia_affinis
ENSMUSG00000021418	Rpp40	98	39.776	ENSGACG00000002472	rpp40	99	39.776	Gasterosteus_aculeatus
ENSMUSG00000021418	Rpp40	99	70.556	ENSGAGG00000012918	RPP40	99	70.556	Gopherus_agassizii
ENSMUSG00000021418	Rpp40	100	83.747	ENSGGOG00000013764	RPP40	100	83.747	Gorilla_gorilla
ENSMUSG00000021418	Rpp40	76	53.125	ENSHBUG00000009378	rpp40	93	38.226	Haplochromis_burtoni
ENSMUSG00000021418	Rpp40	100	84.022	ENSHGLG00000004871	RPP40	100	84.022	Heterocephalus_glaber_female
ENSMUSG00000021418	Rpp40	100	84.298	ENSHGLG00100002080	RPP40	100	84.298	Heterocephalus_glaber_male
ENSMUSG00000021418	Rpp40	96	33.046	ENSHCOG00000013264	-	93	33.046	Hippocampus_comes
ENSMUSG00000021418	Rpp40	99	46.944	ENSIPUG00000008951	RPP40	99	46.944	Ictalurus_punctatus
ENSMUSG00000021418	Rpp40	100	84.573	ENSSTOG00000011199	RPP40	100	84.573	Ictidomys_tridecemlineatus
ENSMUSG00000021418	Rpp40	100	82.059	ENSJJAG00000020629	Rpp40	100	82.059	Jaculus_jaculus
ENSMUSG00000021418	Rpp40	98	36.695	ENSKMAG00000019358	rpp40	99	36.695	Kryptolebias_marmoratus
ENSMUSG00000021418	Rpp40	98	39.496	ENSLBEG00000022724	rpp40	99	39.496	Labrus_bergylta
ENSMUSG00000021418	Rpp40	99	60.278	ENSLACG00000014848	RPP40	99	60.278	Latimeria_chalumnae
ENSMUSG00000021418	Rpp40	100	54.270	ENSLOCG00000011650	rpp40	100	54.270	Lepisosteus_oculatus
ENSMUSG00000021418	Rpp40	77	90.769	ENSLAFG00000007530	RPP40	100	81.188	Loxodonta_africana
ENSMUSG00000021418	Rpp40	100	83.824	ENSMFAG00000043100	RPP40	100	83.824	Macaca_fascicularis
ENSMUSG00000021418	Rpp40	100	83.529	ENSMMUG00000004966	RPP40	100	83.529	Macaca_mulatta
ENSMUSG00000021418	Rpp40	100	84.118	ENSMNEG00000041986	RPP40	100	84.118	Macaca_nemestrina
ENSMUSG00000021418	Rpp40	98	75.821	ENSMLEG00000040851	RPP40	100	82.386	Mandrillus_leucophaeus
ENSMUSG00000021418	Rpp40	98	40.056	ENSMAMG00000019551	rpp40	98	40.056	Mastacembelus_armatus
ENSMUSG00000021418	Rpp40	99	39.335	ENSMZEG00005019475	rpp40	99	39.335	Maylandia_zebra
ENSMUSG00000021418	Rpp40	99	62.778	ENSMGAG00000004009	RPP40	99	62.778	Meleagris_gallopavo
ENSMUSG00000021418	Rpp40	100	88.705	ENSMAUG00000010268	Rpp40	100	88.705	Mesocricetus_auratus
ENSMUSG00000021418	Rpp40	100	84.848	ENSMICG00000003297	RPP40	100	84.706	Microcebus_murinus
ENSMUSG00000021418	Rpp40	100	90.909	ENSMOCG00000000305	Rpp40	100	90.909	Microtus_ochrogaster
ENSMUSG00000021418	Rpp40	98	33.613	ENSMMOG00000020591	-	99	33.613	Mola_mola
ENSMUSG00000021418	Rpp40	100	77.747	ENSMODG00000009826	RPP40	100	77.747	Monodelphis_domestica
ENSMUSG00000021418	Rpp40	98	38.936	ENSMALG00000020133	rpp40	99	38.936	Monopterus_albus
ENSMUSG00000021418	Rpp40	99	100.000	MGP_CAROLIEiJ_G0018429	Rpp40	100	100.000	Mus_caroli
ENSMUSG00000021418	Rpp40	99	100.000	MGP_PahariEiJ_G0019497	Rpp40	100	100.000	Mus_pahari
ENSMUSG00000021418	Rpp40	100	99.174	MGP_SPRETEiJ_G0019309	Rpp40	100	100.000	Mus_spretus
ENSMUSG00000021418	Rpp40	100	86.501	ENSMPUG00000000530	RPP40	93	86.501	Mustela_putorius_furo
ENSMUSG00000021418	Rpp40	100	84.298	ENSMLUG00000000501	RPP40	100	84.298	Myotis_lucifugus
ENSMUSG00000021418	Rpp40	95	77.746	ENSNGAG00000022529	-	100	77.746	Nannospalax_galili
ENSMUSG00000021418	Rpp40	100	87.879	ENSNGAG00000023955	-	100	87.879	Nannospalax_galili
ENSMUSG00000021418	Rpp40	76	53.125	ENSNBRG00000017465	rpp40	86	37.500	Neolamprologus_brichardi
ENSMUSG00000021418	Rpp40	100	83.235	ENSNLEG00000034397	RPP40	100	83.235	Nomascus_leucogenys
ENSMUSG00000021418	Rpp40	100	71.901	ENSMEUG00000005300	RPP40	100	71.901	Notamacropus_eugenii
ENSMUSG00000021418	Rpp40	100	79.890	ENSODEG00000018153	-	100	79.890	Octodon_degus
ENSMUSG00000021418	Rpp40	100	84.022	ENSODEG00000007255	-	100	84.022	Octodon_degus
ENSMUSG00000021418	Rpp40	88	83.946	ENSODEG00000006170	-	100	83.946	Octodon_degus
ENSMUSG00000021418	Rpp40	99	39.335	ENSONIG00000014016	rpp40	99	39.335	Oreochromis_niloticus
ENSMUSG00000021418	Rpp40	83	73.267	ENSOANG00000001200	RPP40	99	73.267	Ornithorhynchus_anatinus
ENSMUSG00000021418	Rpp40	99	74.238	ENSOCUG00000000354	RPP40	99	74.238	Oryctolagus_cuniculus
ENSMUSG00000021418	Rpp40	99	36.389	ENSORLG00000008242	-	100	36.389	Oryzias_latipes
ENSMUSG00000021418	Rpp40	99	36.389	ENSORLG00020013745	-	91	36.389	Oryzias_latipes_hni
ENSMUSG00000021418	Rpp40	99	36.667	ENSORLG00015000887	-	100	36.667	Oryzias_latipes_hsok
ENSMUSG00000021418	Rpp40	99	37.396	ENSOMEG00000002747	rpp40	100	37.396	Oryzias_melastigma
ENSMUSG00000021418	Rpp40	100	85.399	ENSOGAG00000006055	RPP40	100	85.399	Otolemur_garnettii
ENSMUSG00000021418	Rpp40	91	81.682	ENSOARG00000018783	RPP40	100	83.828	Ovis_aries
ENSMUSG00000021418	Rpp40	100	83.471	ENSPPAG00000023703	RPP40	100	83.471	Pan_paniscus
ENSMUSG00000021418	Rpp40	100	85.294	ENSPPRG00000005612	RPP40	100	85.294	Panthera_pardus
ENSMUSG00000021418	Rpp40	100	78.415	ENSPTIG00000018847	RPP40	100	78.415	Panthera_tigris_altaica
ENSMUSG00000021418	Rpp40	100	83.747	ENSPTRG00000017690	RPP40	100	83.747	Pan_troglodytes
ENSMUSG00000021418	Rpp40	100	84.022	ENSPANG00000017865	RPP40	100	84.022	Papio_anubis
ENSMUSG00000021418	Rpp40	98	50.838	ENSPKIG00000006311	rpp40	99	50.838	Paramormyrops_kingsleyae
ENSMUSG00000021418	Rpp40	76	85.938	ENSPSIG00000007854	RPP40	100	71.171	Pelodiscus_sinensis
ENSMUSG00000021418	Rpp40	92	84.395	ENSPEMG00000020809	Rpp40	91	84.395	Peromyscus_maniculatus_bairdii
ENSMUSG00000021418	Rpp40	96	43.089	ENSPMAG00000008412	rpp40	99	48.905	Petromyzon_marinus
ENSMUSG00000021418	Rpp40	100	77.410	ENSPCIG00000010682	RPP40	100	77.410	Phascolarctos_cinereus
ENSMUSG00000021418	Rpp40	98	36.490	ENSPFOG00000011460	rpp40	98	36.490	Poecilia_formosa
ENSMUSG00000021418	Rpp40	98	36.695	ENSPLAG00000001334	rpp40	99	36.695	Poecilia_latipinna
ENSMUSG00000021418	Rpp40	98	36.975	ENSPMEG00000007721	rpp40	99	36.975	Poecilia_mexicana
ENSMUSG00000021418	Rpp40	98	37.815	ENSPREG00000009215	rpp40	99	37.815	Poecilia_reticulata
ENSMUSG00000021418	Rpp40	100	84.022	ENSPPYG00000016194	RPP40	100	84.022	Pongo_abelii
ENSMUSG00000021418	Rpp40	51	83.871	ENSPCAG00000002700	-	100	83.871	Procavia_capensis
ENSMUSG00000021418	Rpp40	100	86.226	ENSPCOG00000003907	RPP40	100	86.226	Propithecus_coquereli
ENSMUSG00000021418	Rpp40	100	84.298	ENSPVAG00000011325	RPP40	100	84.298	Pteropus_vampyrus
ENSMUSG00000021418	Rpp40	76	53.125	ENSPNYG00000004432	rpp40	98	38.255	Pundamilia_nyererei
ENSMUSG00000021418	Rpp40	98	46.927	ENSPNAG00000019125	rpp40	99	46.927	Pygocentrus_nattereri
ENSMUSG00000021418	Rpp40	100	93.664	ENSRNOG00000016226	Rpp40	100	93.664	Rattus_norvegicus
ENSMUSG00000021418	Rpp40	100	84.298	ENSRBIG00000035800	RPP40	100	84.298	Rhinopithecus_bieti
ENSMUSG00000021418	Rpp40	100	84.298	ENSRROG00000039116	RPP40	100	84.298	Rhinopithecus_roxellana
ENSMUSG00000021418	Rpp40	100	82.645	ENSSBOG00000020297	RPP40	100	82.645	Saimiri_boliviensis_boliviensis
ENSMUSG00000021418	Rpp40	99	53.906	ENSSHAG00000002102	RPP40	100	75.180	Sarcophilus_harrisii
ENSMUSG00000021418	Rpp40	99	49.862	ENSSFOG00015001142	rpp40	81	49.862	Scleropages_formosus
ENSMUSG00000021418	Rpp40	98	38.375	ENSSDUG00000007202	rpp40	99	38.375	Seriola_dumerili
ENSMUSG00000021418	Rpp40	98	38.655	ENSSLDG00000017563	rpp40	99	38.655	Seriola_lalandi_dorsalis
ENSMUSG00000021418	Rpp40	76	79.688	ENSSPUG00000018950	-	100	66.441	Sphenodon_punctatus
ENSMUSG00000021418	Rpp40	99	68.056	ENSSPUG00000017487	-	99	68.056	Sphenodon_punctatus
ENSMUSG00000021418	Rpp40	98	38.655	ENSSPAG00000022716	rpp40	99	38.655	Stegastes_partitus
ENSMUSG00000021418	Rpp40	100	81.543	ENSSSCG00000000998	RPP40	100	81.543	Sus_scrofa
ENSMUSG00000021418	Rpp40	99	66.760	ENSTGUG00000002258	-	100	66.760	Taeniopygia_guttata
ENSMUSG00000021418	Rpp40	76	82.812	ENSTGUG00000015246	-	100	70.056	Taeniopygia_guttata
ENSMUSG00000021418	Rpp40	97	40.227	ENSTRUG00000003755	rpp40	98	40.227	Takifugu_rubripes
ENSMUSG00000021418	Rpp40	99	38.611	ENSTNIG00000003077	rpp40	99	38.611	Tetraodon_nigroviridis
ENSMUSG00000021418	Rpp40	99	57.031	ENSTBEG00000014467	-	73	58.800	Tupaia_belangeri
ENSMUSG00000021418	Rpp40	99	78.177	ENSTTRG00000007319	RPP40	100	78.177	Tursiops_truncatus
ENSMUSG00000021418	Rpp40	100	86.777	ENSUAMG00000002159	RPP40	100	86.777	Ursus_americanus
ENSMUSG00000021418	Rpp40	100	86.777	ENSUMAG00000018639	RPP40	94	86.777	Ursus_maritimus
ENSMUSG00000021418	Rpp40	81	62.925	ENSVPAG00000004652	-	99	62.925	Vicugna_pacos
ENSMUSG00000021418	Rpp40	100	85.124	ENSVVUG00000005451	RPP40	100	85.124	Vulpes_vulpes
ENSMUSG00000021418	Rpp40	99	55.000	ENSXETG00000017617	rpp40	100	54.521	Xenopus_tropicalis
ENSMUSG00000021418	Rpp40	76	39.062	ENSXCOG00000019991	-	86	30.966	Xiphophorus_couchianus
ENSMUSG00000021418	Rpp40	99	33.903	ENSXMAG00000024940	rpp40	99	33.903	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001682	tRNA 5'-leader removal	9630247.	ISO	Process
GO:0004526	ribonuclease P activity	9630247.	ISO	Function
GO:0004526	ribonuclease P activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005655	nucleolar ribonuclease P complex	9630247.	ISO	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030681	multimeric ribonuclease P complex	-	ISO	Component