EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021428 (Gene tree)
Gene ID: 71340
Gene Symbol: Riok1
Alias: 3110046C13Rik|5430416A05Rik
Full Name: RIO kinase 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 24439 bases
Position: chr13:38036995-38061433
Accession: 1918590
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000021866	RIO1	PF01163.22	1.7e-75	1	1
ENSMUSP00000152922	RIO1	PF01163.22	2.6e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224683	-	619	-	-	- (aa)	-	-
ENSMUST00000224962	-	1464	-	-	- (aa)	-	-
ENSMUST00000224956	-	619	-	ENSMUSP00000152922	206 (aa)	-	A0A286YCS3
ENSMUST00000224477	-	886	-	ENSMUSP00000153030	152 (aa)	-	A0A286YCL3
ENSMUST00000225954	-	569	-	-	- (aa)	-	-
ENSMUST00000225418	-	734	-	-	- (aa)	-	-
ENSMUST00000021866	-	2738	XM_017315606	ENSMUSP00000021866	567 (aa)	XP_017171095	Q922Q2
ENSMUST00000226056	-	1198	-	-	- (aa)	-	-
ENSMUST00000223656	-	2373	-	ENSMUSP00000153494	85 (aa)	-	A0A286YDM8
ENSMUST00000226006	-	2307	-	-	- (aa)	-	-
ENSMUST00000226110	-	386	-	ENSMUSP00000153217	113 (aa)	-	A0A286YDE8
ENSMUST00000225174	-	2006	-	-	- (aa)	-	-
ENSMUST00000225816	-	1791	-	-	- (aa)	-	-
ENSMUST00000223910	-	2509	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021428's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000021428	Riok1	58	40.000	ENSMUSG00000024404	Riok3	87	56.604

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021428	Riok1	99	80.071	ENSG00000124784	RIOK1	99	79.469	Homo_sapiens
ENSMUSG00000021428	Riok1	57	67.593	ENSAPOG00000015632	riok1	99	68.210	Acanthochromis_polyacanthus
ENSMUSG00000021428	Riok1	99	80.995	ENSAMEG00000017367	RIOK1	99	80.107	Ailuropoda_melanoleuca
ENSMUSG00000021428	Riok1	92	67.368	ENSACIG00000003735	riok1	85	71.069	Amphilophus_citrinellus
ENSMUSG00000021428	Riok1	99	65.775	ENSAOCG00000011818	riok1	100	65.775	Amphiprion_ocellaris
ENSMUSG00000021428	Riok1	99	65.836	ENSAPEG00000001345	riok1	100	66.014	Amphiprion_percula
ENSMUSG00000021428	Riok1	85	69.886	ENSATEG00000006594	riok1	99	70.194	Anabas_testudineus
ENSMUSG00000021428	Riok1	92	71.958	ENSAPLG00000004196	RIOK1	100	77.386	Anas_platyrhynchos
ENSMUSG00000021428	Riok1	100	72.408	ENSACAG00000000695	RIOK1	100	72.232	Anolis_carolinensis
ENSMUSG00000021428	Riok1	99	76.098	ENSANAG00000023777	RIOK1	99	70.766	Aotus_nancymaae
ENSMUSG00000021428	Riok1	99	65.480	ENSACLG00000015799	riok1	99	65.364	Astatotilapia_calliptera
ENSMUSG00000021428	Riok1	99	66.263	ENSAMXG00000015286	riok1	99	66.609	Astyanax_mexicanus
ENSMUSG00000021428	Riok1	99	79.181	ENSBTAG00000013821	RIOK1	99	79.004	Bos_taurus
ENSMUSG00000021428	Riok1	81	50.867	WBGene00019698	riok-1	85	46.325	Caenorhabditis_elegans
ENSMUSG00000021428	Riok1	99	80.214	ENSCJAG00000042960	RIOK1	99	80.214	Callithrix_jacchus
ENSMUSG00000021428	Riok1	99	79.218	ENSCAFG00000009563	RIOK1	99	79.396	Canis_familiaris
ENSMUSG00000021428	Riok1	99	74.634	ENSCAFG00020013233	RIOK1	95	77.674	Canis_lupus_dingo
ENSMUSG00000021428	Riok1	99	79.004	ENSCHIG00000001534	RIOK1	99	78.826	Capra_hircus
ENSMUSG00000021428	Riok1	66	84.085	ENSTSYG00000011368	RIOK1	100	87.462	Carlito_syrichta
ENSMUSG00000021428	Riok1	86	76.836	ENSCAPG00000008489	RIOK1	100	82.543	Cavia_aperea
ENSMUSG00000021428	Riok1	99	74.634	ENSCPOG00000009882	RIOK1	99	77.798	Cavia_porcellus
ENSMUSG00000021428	Riok1	99	80.392	ENSCCAG00000024061	RIOK1	99	80.392	Cebus_capucinus
ENSMUSG00000021428	Riok1	100	79.754	ENSCATG00000001548	RIOK1	99	80.392	Cercocebus_atys
ENSMUSG00000021428	Riok1	99	81.883	ENSCLAG00000003522	RIOK1	99	81.383	Chinchilla_lanigera
ENSMUSG00000021428	Riok1	99	74.634	ENSCSAG00000007396	RIOK1	97	78.667	Chlorocebus_sabaeus
ENSMUSG00000021428	Riok1	99	61.951	ENSCHOG00000001873	RIOK1	84	69.551	Choloepus_hoffmanni
ENSMUSG00000021428	Riok1	96	71.717	ENSCPBG00000008685	RIOK1	90	71.429	Chrysemys_picta_bellii
ENSMUSG00000021428	Riok1	100	79.401	ENSCANG00000032919	RIOK1	99	80.036	Colobus_angolensis_palliatus
ENSMUSG00000021428	Riok1	100	87.478	ENSCGRG00001018868	Riok1	100	87.478	Cricetulus_griseus_chok1gshd
ENSMUSG00000021428	Riok1	100	87.478	ENSCGRG00000008015	Riok1	100	87.478	Cricetulus_griseus_crigri
ENSMUSG00000021428	Riok1	88	49.503	ENSCSEG00000015014	riok1	86	50.000	Cynoglossus_semilaevis
ENSMUSG00000021428	Riok1	57	66.258	ENSCVAG00000011291	riok1	99	66.258	Cyprinodon_variegatus
ENSMUSG00000021428	Riok1	99	67.476	ENSDARG00000016399	riok1	100	67.021	Danio_rerio
ENSMUSG00000021428	Riok1	99	78.131	ENSDNOG00000015813	RIOK1	99	77.601	Dasypus_novemcinctus
ENSMUSG00000021428	Riok1	99	80.142	ENSDORG00000008530	Riok1	99	80.319	Dipodomys_ordii
ENSMUSG00000021428	Riok1	84	53.409	FBgn0036187	RIOK1	82	50.615	Drosophila_melanogaster
ENSMUSG00000021428	Riok1	99	77.857	ENSETEG00000020273	RIOK1	99	77.857	Echinops_telfairi
ENSMUSG00000021428	Riok1	99	56.796	ENSEBUG00000013672	riok1	86	65.650	Eptatretus_burgeri
ENSMUSG00000021428	Riok1	99	75.980	ENSEASG00005012032	RIOK1	93	79.468	Equus_asinus_asinus
ENSMUSG00000021428	Riok1	99	80.427	ENSECAG00000009007	RIOK1	99	80.427	Equus_caballus
ENSMUSG00000021428	Riok1	78	69.091	ENSEEUG00000007123	RIOK1	100	69.091	Erinaceus_europaeus
ENSMUSG00000021428	Riok1	99	66.019	ENSELUG00000017029	riok1	99	64.956	Esox_lucius
ENSMUSG00000021428	Riok1	99	78.622	ENSFCAG00000027290	RIOK1	99	78.622	Felis_catus
ENSMUSG00000021428	Riok1	99	72.408	ENSFALG00000013244	RIOK1	99	72.759	Ficedula_albicollis
ENSMUSG00000021428	Riok1	99	79.041	ENSFDAG00000019139	RIOK1	99	79.218	Fukomys_damarensis
ENSMUSG00000021428	Riok1	94	68.041	ENSFHEG00000021419	riok1	98	67.920	Fundulus_heteroclitus
ENSMUSG00000021428	Riok1	93	65.803	ENSGMOG00000018668	riok1	92	70.229	Gadus_morhua
ENSMUSG00000021428	Riok1	58	72.072	ENSGALG00000012795	RIOK1	100	75.676	Gallus_gallus
ENSMUSG00000021428	Riok1	92	68.947	ENSGAFG00000004091	riok1	79	60.083	Gambusia_affinis
ENSMUSG00000021428	Riok1	92	68.421	ENSGACG00000002496	riok1	94	70.445	Gasterosteus_aculeatus
ENSMUSG00000021428	Riok1	99	70.732	ENSGAGG00000002262	RIOK1	96	75.055	Gopherus_agassizii
ENSMUSG00000021428	Riok1	99	75.122	ENSGGOG00000011037	RIOK1	99	80.000	Gorilla_gorilla
ENSMUSG00000021428	Riok1	99	77.798	ENSHGLG00000008699	RIOK1	99	77.442	Heterocephalus_glaber_female
ENSMUSG00000021428	Riok1	99	77.975	ENSHGLG00100008188	RIOK1	99	77.620	Heterocephalus_glaber_male
ENSMUSG00000021428	Riok1	99	64.390	ENSHCOG00000013275	riok1	91	68.000	Hippocampus_comes
ENSMUSG00000021428	Riok1	99	67.422	ENSIPUG00000003290	riok1	100	68.284	Ictalurus_punctatus
ENSMUSG00000021428	Riok1	99	82.060	ENSSTOG00000009289	RIOK1	99	82.238	Ictidomys_tridecemlineatus
ENSMUSG00000021428	Riok1	100	80.141	ENSJJAG00000015152	Riok1	99	80.783	Jaculus_jaculus
ENSMUSG00000021428	Riok1	92	65.608	ENSKMAG00000019378	riok1	99	73.522	Kryptolebias_marmoratus
ENSMUSG00000021428	Riok1	93	67.188	ENSLBEG00000016650	riok1	86	69.899	Labrus_bergylta
ENSMUSG00000021428	Riok1	100	64.860	ENSLACG00000000300	RIOK1	100	64.870	Latimeria_chalumnae
ENSMUSG00000021428	Riok1	100	67.776	ENSLOCG00000011728	riok1	100	67.951	Lepisosteus_oculatus
ENSMUSG00000021428	Riok1	98	80.325	ENSLAFG00000005504	RIOK1	99	79.603	Loxodonta_africana
ENSMUSG00000021428	Riok1	100	79.754	ENSMFAG00000029990	RIOK1	99	80.392	Macaca_fascicularis
ENSMUSG00000021428	Riok1	100	79.577	ENSMMUG00000015577	RIOK1	99	80.214	Macaca_mulatta
ENSMUSG00000021428	Riok1	99	77.184	ENSMNEG00000034396	RIOK1	97	80.088	Macaca_nemestrina
ENSMUSG00000021428	Riok1	99	80.392	ENSMLEG00000026327	RIOK1	99	80.392	Mandrillus_leucophaeus
ENSMUSG00000021428	Riok1	98	65.709	ENSMAMG00000019557	riok1	99	65.889	Mastacembelus_armatus
ENSMUSG00000021428	Riok1	99	64.947	ENSMZEG00005019482	riok1	99	65.187	Maylandia_zebra
ENSMUSG00000021428	Riok1	100	69.894	ENSMGAG00000003816	RIOK1	100	71.178	Meleagris_gallopavo
ENSMUSG00000021428	Riok1	100	87.654	ENSMAUG00000012751	Riok1	100	87.654	Mesocricetus_auratus
ENSMUSG00000021428	Riok1	99	80.427	ENSMICG00000044301	RIOK1	83	81.139	Microcebus_murinus
ENSMUSG00000021428	Riok1	100	86.596	ENSMOCG00000017032	Riok1	100	86.596	Microtus_ochrogaster
ENSMUSG00000021428	Riok1	92	66.667	ENSMMOG00000020598	riok1	87	61.341	Mola_mola
ENSMUSG00000021428	Riok1	99	69.268	ENSMODG00000009964	RIOK1	99	73.016	Monodelphis_domestica
ENSMUSG00000021428	Riok1	93	59.686	ENSMALG00000019982	riok1	89	64.854	Monopterus_albus
ENSMUSG00000021428	Riok1	100	97.178	MGP_CAROLIEiJ_G0018439	Riok1	100	97.178	Mus_caroli
ENSMUSG00000021428	Riok1	100	96.473	MGP_PahariEiJ_G0019507	Riok1	100	96.473	Mus_pahari
ENSMUSG00000021428	Riok1	100	98.413	MGP_SPRETEiJ_G0019319	Riok1	100	98.413	Mus_spretus
ENSMUSG00000021428	Riok1	99	78.191	ENSMPUG00000000570	RIOK1	99	78.901	Mustela_putorius_furo
ENSMUSG00000021428	Riok1	99	79.574	ENSMLUG00000015312	RIOK1	99	79.396	Myotis_lucifugus
ENSMUSG00000021428	Riok1	99	83.571	ENSNGAG00000021734	Riok1	99	83.036	Nannospalax_galili
ENSMUSG00000021428	Riok1	92	66.842	ENSNBRG00000017489	riok1	78	73.005	Neolamprologus_brichardi
ENSMUSG00000021428	Riok1	99	71.530	ENSNLEG00000011621	RIOK1	99	70.796	Nomascus_leucogenys
ENSMUSG00000021428	Riok1	92	51.852	ENSMEUG00000006679	-	84	51.681	Notamacropus_eugenii
ENSMUSG00000021428	Riok1	92	60.847	ENSOPRG00000009524	RIOK1	100	78.976	Ochotona_princeps
ENSMUSG00000021428	Riok1	99	75.610	ENSODEG00000005663	RIOK1	98	67.929	Octodon_degus
ENSMUSG00000021428	Riok1	99	64.956	ENSONIG00000014010	riok1	87	70.363	Oreochromis_niloticus
ENSMUSG00000021428	Riok1	82	81.681	ENSOANG00000012553	RIOK1	100	81.681	Ornithorhynchus_anatinus
ENSMUSG00000021428	Riok1	100	77.018	ENSOCUG00000011824	RIOK1	99	77.975	Oryctolagus_cuniculus
ENSMUSG00000021428	Riok1	99	65.542	ENSORLG00000008221	riok1	99	65.653	Oryzias_latipes
ENSMUSG00000021428	Riok1	98	64.716	ENSORLG00020013838	riok1	60	69.729	Oryzias_latipes_hni
ENSMUSG00000021428	Riok1	100	64.174	ENSORLG00015009817	riok1	100	64.261	Oryzias_latipes_hsok
ENSMUSG00000021428	Riok1	99	65.241	ENSOMEG00000002758	riok1	89	65.832	Oryzias_melastigma
ENSMUSG00000021428	Riok1	99	74.634	ENSOGAG00000010192	RIOK1	99	71.378	Otolemur_garnettii
ENSMUSG00000021428	Riok1	99	79.004	ENSOARG00000017747	RIOK1	99	78.826	Ovis_aries
ENSMUSG00000021428	Riok1	99	72.647	ENSPPAG00000016349	RIOK1	100	83.486	Pan_paniscus
ENSMUSG00000021428	Riok1	99	78.622	ENSPPRG00000001932	RIOK1	99	78.622	Panthera_pardus
ENSMUSG00000021428	Riok1	99	78.975	ENSPTIG00000018545	RIOK1	99	78.975	Panthera_tigris_altaica
ENSMUSG00000021428	Riok1	99	80.427	ENSPTRG00000017700	RIOK1	99	79.823	Pan_troglodytes
ENSMUSG00000021428	Riok1	100	79.577	ENSPANG00000016522	RIOK1	99	80.214	Papio_anubis
ENSMUSG00000021428	Riok1	99	65.729	ENSPKIG00000006442	riok1	100	66.488	Paramormyrops_kingsleyae
ENSMUSG00000021428	Riok1	100	74.074	ENSPSIG00000006488	RIOK1	97	74.643	Pelodiscus_sinensis
ENSMUSG00000021428	Riok1	99	61.951	ENSPMGG00000017807	riok1	96	67.769	Periophthalmus_magnuspinnatus
ENSMUSG00000021428	Riok1	100	88.183	ENSPEMG00000017844	Riok1	100	88.183	Peromyscus_maniculatus_bairdii
ENSMUSG00000021428	Riok1	99	66.010	ENSPMAG00000006351	riok1	98	67.312	Petromyzon_marinus
ENSMUSG00000021428	Riok1	99	69.756	ENSPCIG00000012653	RIOK1	93	72.243	Phascolarctos_cinereus
ENSMUSG00000021428	Riok1	94	68.557	ENSPFOG00000011532	riok1	99	61.497	Poecilia_formosa
ENSMUSG00000021428	Riok1	94	68.557	ENSPLAG00000001341	riok1	99	61.676	Poecilia_latipinna
ENSMUSG00000021428	Riok1	94	68.041	ENSPMEG00000007710	riok1	99	61.676	Poecilia_mexicana
ENSMUSG00000021428	Riok1	92	68.947	ENSPREG00000009237	riok1	87	68.267	Poecilia_reticulata
ENSMUSG00000021428	Riok1	99	80.462	ENSPPYG00000016207	RIOK1	99	80.462	Pongo_abelii
ENSMUSG00000021428	Riok1	100	67.372	ENSPCAG00000007892	RIOK1	100	67.901	Procavia_capensis
ENSMUSG00000021428	Riok1	100	79.196	ENSPVAG00000014091	RIOK1	100	79.232	Pteropus_vampyrus
ENSMUSG00000021428	Riok1	58	71.560	ENSPNYG00000004465	riok1	100	71.560	Pundamilia_nyererei
ENSMUSG00000021428	Riok1	99	68.551	ENSPNAG00000015435	riok1	99	69.081	Pygocentrus_nattereri
ENSMUSG00000021428	Riok1	100	91.887	ENSRNOG00000014049	Riok1	100	94.828	Rattus_norvegicus
ENSMUSG00000021428	Riok1	100	78.873	ENSRBIG00000036685	RIOK1	99	79.501	Rhinopithecus_bieti
ENSMUSG00000021428	Riok1	100	79.049	ENSRROG00000036611	RIOK1	100	79.049	Rhinopithecus_roxellana
ENSMUSG00000021428	Riok1	64	43.137	YOR119C	RIO1	91	37.093	Saccharomyces_cerevisiae
ENSMUSG00000021428	Riok1	99	80.462	ENSSBOG00000012588	RIOK1	99	80.354	Saimiri_boliviensis_boliviensis
ENSMUSG00000021428	Riok1	99	71.220	ENSSHAG00000003091	RIOK1	92	76.681	Sarcophilus_harrisii
ENSMUSG00000021428	Riok1	99	66.505	ENSSFOG00015001035	riok1	99	65.841	Scleropages_formosus
ENSMUSG00000021428	Riok1	58	66.055	ENSSDUG00000007291	riok1	100	66.667	Seriola_dumerili
ENSMUSG00000021428	Riok1	99	65.357	ENSSLDG00000017657	riok1	99	65.536	Seriola_lalandi_dorsalis
ENSMUSG00000021428	Riok1	96	61.111	ENSSPUG00000007624	RIOK1	82	66.390	Sphenodon_punctatus
ENSMUSG00000021428	Riok1	99	66.071	ENSSPAG00000022710	riok1	100	65.536	Stegastes_partitus
ENSMUSG00000021428	Riok1	99	76.649	ENSSSCG00000001024	RIOK1	99	76.649	Sus_scrofa
ENSMUSG00000021428	Riok1	99	69.268	ENSTGUG00000002331	RIOK1	99	71.479	Taeniopygia_guttata
ENSMUSG00000021428	Riok1	93	59.896	ENSTRUG00000002854	riok1	94	63.212	Takifugu_rubripes
ENSMUSG00000021428	Riok1	52	64.094	ENSTRUG00000001575	-	100	64.094	Takifugu_rubripes
ENSMUSG00000021428	Riok1	99	62.255	ENSTNIG00000003078	riok1	98	58.824	Tetraodon_nigroviridis
ENSMUSG00000021428	Riok1	99	76.114	ENSTBEG00000016730	RIOK1	99	76.649	Tupaia_belangeri
ENSMUSG00000021428	Riok1	92	74.603	ENSTTRG00000017335	RIOK1	81	85.861	Tursiops_truncatus
ENSMUSG00000021428	Riok1	99	74.634	ENSUAMG00000003721	RIOK1	94	79.127	Ursus_americanus
ENSMUSG00000021428	Riok1	99	80.817	ENSUMAG00000018461	RIOK1	99	79.929	Ursus_maritimus
ENSMUSG00000021428	Riok1	99	74.146	ENSVPAG00000010813	-	73	76.027	Vicugna_pacos
ENSMUSG00000021428	Riok1	99	79.041	ENSVVUG00000005018	RIOK1	99	79.218	Vulpes_vulpes
ENSMUSG00000021428	Riok1	88	70.741	ENSXETG00000020436	riok1	85	72.557	Xenopus_tropicalis
ENSMUSG00000021428	Riok1	85	71.023	ENSXCOG00000000245	riok1	100	64.916	Xiphophorus_couchianus
ENSMUSG00000021428	Riok1	94	68.557	ENSXMAG00000014572	riok1	82	68.822	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0004674	protein serine/threonine kinase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030490	maturation of SSU-rRNA	-	ISO	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	ISO	Component
GO:0034708	methyltransferase complex	-	ISO	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042274	ribosomal small subunit biogenesis	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:2000234	positive regulation of rRNA processing	-	ISO	Process